Wall clock time and date at job start Sun Mar 29 2020 21:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 111.00052 * 2 1 4 4 C 1.46893 * 110.99718 * 123.95323 * 2 1 3 5 5 C 1.52998 * 109.47240 * 169.99999 * 4 2 1 6 6 N 1.46499 * 109.47574 * 179.97438 * 5 4 2 7 7 C 1.38804 * 120.00247 * 180.02562 * 6 5 4 8 8 C 1.40081 * 120.75769 * 180.02562 * 7 6 5 9 9 N 1.31668 * 119.13739 * 180.02562 * 8 7 6 10 10 C 1.33595 * 120.78831 * 359.97438 * 9 8 7 11 11 C 1.41153 * 119.16706 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00184 * 359.97438 * 11 10 9 13 13 C 1.40045 * 119.99823 * 180.02562 * 11 10 9 14 14 N 1.30730 * 120.00049 * 359.72575 * 13 11 10 15 15 Si 1.86795 * 119.99981 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47317 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47320 * 120.00329 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00189 * 15 13 11 19 19 N 1.33599 * 121.65831 * 0.27830 * 10 9 8 20 20 C 1.31651 * 120.79256 * 359.43897 * 19 10 9 21 21 H 1.09001 * 109.46948 * 296.05040 * 1 2 3 22 22 H 1.09005 * 109.46933 * 56.04562 * 1 2 3 23 23 H 1.08999 * 109.47130 * 176.04275 * 1 2 3 24 24 H 1.08994 * 109.46869 * 183.95166 * 3 2 1 25 25 H 1.09006 * 109.47129 * 303.95672 * 3 2 1 26 26 H 1.08996 * 109.47189 * 63.95005 * 3 2 1 27 27 H 1.09003 * 109.47531 * 49.99692 * 4 2 1 28 28 H 1.08998 * 109.47248 * 290.00061 * 4 2 1 29 29 H 1.08997 * 109.46847 * 59.99799 * 5 4 2 30 30 H 1.08998 * 109.47051 * 300.00183 * 5 4 2 31 31 H 0.97000 * 120.00052 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.43433 * 359.97438 * 8 7 6 33 33 H 0.97000 * 120.00283 * 180.02562 * 14 13 11 34 34 H 1.08001 * 120.43562 * 180.25207 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9554 0.9704 6 7 4.0295 -1.7187 2.1052 7 6 5.3835 -2.0163 2.1745 8 6 5.9025 -2.7456 3.2520 9 7 7.1920 -3.0095 3.2858 10 6 8.0014 -2.5911 2.3088 11 6 9.3783 -2.8937 2.3793 12 1 9.7654 -3.4565 3.2159 13 6 10.2427 -2.4632 1.3650 14 7 9.7734 -1.7858 0.3501 15 14 12.0647 -2.8643 1.4579 16 1 12.3384 -3.6405 2.6940 17 1 12.4559 -3.6673 0.2717 18 1 12.8485 -1.6032 1.4822 19 7 7.5413 -1.8893 1.2693 20 6 6.2622 -1.5945 1.1684 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8525 23 1 -0.3633 -1.0252 -0.0709 24 1 3.0828 1.3432 -0.0708 25 1 1.5898 1.9164 -0.8525 26 1 1.7044 1.8723 0.9232 27 1 1.5089 -1.7406 1.1757 28 1 1.7975 -0.2247 2.0627 29 1 3.9908 0.0193 0.9324 30 1 3.7023 -1.4966 0.0452 31 1 3.4310 -2.0162 2.8081 32 1 5.2535 -3.0863 4.0452 33 1 10.3720 -1.4880 -0.3527 34 1 5.8958 -1.0303 0.3235 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161668798.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:16 Heat of formation + Delta-G solvation = 36.630987 kcal Electronic energy + Delta-G solvation = -16045.009358 eV Core-core repulsion = 13398.292247 eV Total energy + Delta-G solvation = -2646.717111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87843 -38.83732 -36.71033 -35.21082 -33.66120 -31.80240 -29.65852 -28.49806 -27.01723 -25.42421 -24.29139 -22.85605 -21.94261 -19.71921 -18.17420 -17.50192 -17.04759 -16.63938 -16.25923 -15.98968 -15.57302 -15.30419 -14.78859 -14.62514 -14.43496 -13.74246 -13.25456 -13.00613 -12.96451 -12.82504 -12.64538 -12.57242 -12.44347 -12.20785 -11.87495 -11.42927 -11.27555 -11.13037 -10.70468 -9.36075 -9.22244 -8.50635 -8.30332 -6.32917 0.87323 1.02560 1.43945 1.54335 1.60787 2.28213 2.54827 2.85949 3.32545 3.90344 3.98245 4.04333 4.08916 4.12516 4.29985 4.35370 4.45225 4.52520 4.65072 4.69362 4.72656 4.90362 4.99318 5.02332 5.06597 5.19042 5.34888 5.56881 5.99015 6.05821 6.24985 6.50724 6.59291 6.80466 7.08710 7.33197 8.30383 8.52214 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.049411 B = 0.004659 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.537663 B = 6008.314975 C = 6477.013660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.562 5.562 3 C 0.019 3.981 4 C 0.058 3.942 5 C 0.142 3.858 6 N -0.737 5.737 7 C -0.008 4.008 8 C 0.087 3.913 9 N -0.588 5.588 10 C 0.337 3.663 11 C -0.458 4.458 12 H 0.082 0.918 13 C 0.025 3.975 14 N -0.765 5.765 15 Si 0.996 3.004 16 H -0.258 1.258 17 H -0.264 1.264 18 H -0.264 1.264 19 N -0.507 5.507 20 C 0.076 3.924 21 H 0.031 0.969 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.030 0.970 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.401 0.599 32 H 0.166 0.834 33 H 0.279 0.721 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 4.569 -1.163 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.286 5.286 3 C -0.129 4.129 4 C -0.070 4.070 5 C 0.016 3.984 6 N -0.374 5.374 7 C -0.114 4.114 8 C -0.086 4.086 9 N -0.307 5.307 10 C 0.093 3.907 11 C -0.495 4.495 12 H 0.101 0.899 13 C -0.196 4.196 14 N -0.390 5.390 15 Si 0.815 3.185 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.188 1.188 19 N -0.224 5.224 20 C -0.099 4.099 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.099 0.901 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.236 0.764 32 H 0.183 0.817 33 H 0.089 0.911 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.298 4.339 -1.920 14.119 hybrid contribution -0.727 0.428 0.845 1.195 sum -14.025 4.766 -1.074 14.852 Atomic orbital electron populations 1.22433 0.85503 1.03003 1.01252 1.61851 1.09408 1.14564 1.42812 1.22495 1.00879 0.88342 1.01221 1.22093 0.93505 0.99319 0.92087 1.21011 0.93650 0.94708 0.88999 1.43449 1.03353 1.63857 1.26774 1.19170 0.87006 1.05889 0.99364 1.22831 0.92076 0.96917 0.96817 1.68542 1.04906 1.27192 1.30094 1.20143 0.94914 0.90507 0.85124 1.19398 0.90064 1.32383 1.07655 0.89948 1.26923 1.05926 0.93189 0.93527 1.70235 1.37880 1.24079 1.06767 0.84971 0.74950 0.79051 0.79490 1.18150 1.18833 1.18813 1.69194 1.12953 1.15760 1.24536 1.23027 0.89844 0.99495 0.97563 0.95041 0.90256 0.90754 0.91953 0.90051 0.95123 0.89443 0.93674 0.93995 0.93765 0.76414 0.81678 0.91074 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.57 127.69 1.22 1.60 16 2 N -0.56 -11.27 5.02 -948.85 -4.76 -16.03 16 3 C 0.02 0.35 9.32 127.69 1.19 1.54 16 4 C 0.06 1.21 5.07 86.30 0.44 1.65 16 5 C 0.14 3.93 4.86 86.38 0.42 4.35 16 6 N -0.74 -23.15 5.71 -338.15 -1.93 -25.08 16 7 C -0.01 -0.33 6.72 38.93 0.26 -0.07 16 8 C 0.09 3.97 11.20 85.16 0.95 4.92 16 9 N -0.59 -32.41 10.34 -193.42 -2.00 -34.41 16 10 C 0.34 20.24 7.35 134.95 0.99 21.23 16 11 C -0.46 -27.04 9.35 23.42 0.22 -26.82 16 12 H 0.08 4.74 7.85 -2.91 -0.02 4.71 16 13 C 0.03 1.36 5.50 85.30 0.47 1.83 16 14 N -0.76 -42.94 11.41 21.84 0.25 -42.70 16 15 Si 1.00 40.23 29.56 68.60 2.03 42.26 16 16 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 19 N -0.51 -29.69 7.84 -193.43 -1.52 -31.20 16 20 C 0.08 3.76 10.58 85.17 0.90 4.66 16 21 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 22 H 0.08 1.00 8.12 -2.38 -0.02 0.98 16 23 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 24 H 0.06 1.32 6.47 -2.39 -0.02 1.30 16 25 H 0.08 1.27 8.12 -2.38 -0.02 1.25 16 26 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.09 1.66 8.06 -2.39 -0.02 1.64 16 28 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 29 H 0.04 1.24 6.40 -2.39 -0.02 1.23 16 30 H 0.04 1.37 7.99 -2.39 -0.02 1.35 16 31 H 0.40 10.28 8.50 -92.71 -0.79 9.50 16 32 H 0.17 5.97 8.06 -2.91 -0.02 5.95 16 33 H 0.28 14.00 8.29 -92.71 -0.77 13.23 16 34 H 0.14 6.30 6.88 -2.91 -0.02 6.28 16 Total: -1.00 -69.80 287.98 -0.55 -70.35 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.31 Total: 21.92 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 7.07 Total: 14.89 kcal Atomic # 7 Polarization: -139.46 SS G_CDS: -9.96 Total: -149.42 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -69.80 -0.55 -70.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161668798.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.983 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds