Wall clock time and date at job start Sun Mar 29 2020 21:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47210 * 2 1 4 4 C 1.46899 * 110.99988 * 66.04387 * 3 2 1 5 5 C 1.38532 * 110.99798 * 189.99935 * 3 2 1 6 6 N 1.32889 * 120.49093 * 297.67057 * 5 3 2 7 7 C 1.32487 * 120.62042 * 180.02562 * 6 5 3 8 8 N 1.38424 * 119.17839 * 180.02562 * 7 6 5 9 9 C 1.36996 * 120.00178 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.38826 * 120.00317 * 180.02562 * 9 8 7 12 12 N 1.31546 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00121 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47025 * 59.99789 * 13 11 9 15 15 H 1.48497 * 109.47033 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46967 * 299.99822 * 13 11 9 17 17 N 1.32537 * 121.64020 * 359.72130 * 7 6 5 18 18 C 1.32443 * 120.93574 * 0.57366 * 17 7 6 19 19 C 1.38184 * 119.28908 * 359.43855 * 18 17 7 20 20 C 1.50698 * 120.75385 * 180.29773 * 19 18 17 21 21 H 1.08994 * 109.47083 * 60.00033 * 1 2 3 22 22 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47283 * 300.00169 * 1 2 3 24 24 H 1.08998 * 109.47283 * 239.99831 * 2 1 3 25 25 H 1.09000 * 109.46668 * 119.99984 * 2 1 3 26 26 H 1.09003 * 109.47219 * 178.44901 * 4 3 2 27 27 H 1.09003 * 109.47050 * 298.45197 * 4 3 2 28 28 H 1.09004 * 109.47161 * 58.44813 * 4 3 2 29 29 H 0.97003 * 120.00503 * 0.02562 * 8 7 6 30 30 H 0.97000 * 120.00055 * 180.02562 * 12 11 9 31 31 H 1.07997 * 120.34966 * 179.71186 * 18 17 7 32 32 H 1.09005 * 109.47159 * 89.22084 * 20 19 18 33 33 H 1.08997 * 109.47021 * 209.21596 * 20 19 18 34 34 H 1.08996 * 109.47216 * 329.21386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.3860 1.4284 -0.2246 6 7 4.2285 0.8603 0.6318 7 6 5.5357 0.9007 0.4198 8 7 6.3861 0.2985 1.3310 9 6 7.7406 0.3306 1.1287 10 1 8.1450 0.8255 0.2580 11 6 8.5935 -0.2737 2.0423 12 7 8.1010 -0.8769 3.1026 13 14 10.4404 -0.2305 1.7660 14 1 10.9017 1.1804 1.7236 15 1 11.1238 -0.9410 2.8766 16 1 10.7640 -0.8961 0.4785 17 7 6.0490 1.4982 -0.6461 18 6 5.2680 2.0898 -1.5372 19 6 3.8985 2.0708 -1.3542 20 6 2.9787 2.7276 -2.3510 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0683 3.0815 1.2381 27 1 0.5857 2.1037 1.3567 28 1 2.0972 1.5216 2.0950 29 1 6.0230 -0.1462 2.1129 30 1 8.6969 -1.2988 3.7411 31 1 5.6967 2.5779 -2.3999 32 1 2.7098 2.0093 -3.1256 33 1 2.0766 3.0688 -1.8430 34 1 3.4842 3.5798 -2.8052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163177307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:29 Heat of formation + Delta-G solvation = 60.541415 kcal Electronic energy + Delta-G solvation = -16639.592141 eV Core-core repulsion = 13993.911864 eV Total energy + Delta-G solvation = -2645.680277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.07109 -37.36457 -35.24631 -32.68806 -32.13230 -30.86926 -29.92555 -26.62885 -25.64592 -24.36381 -23.13167 -21.20290 -20.54819 -18.14283 -17.25821 -16.32145 -15.38899 -15.02630 -14.40758 -14.33037 -13.71343 -13.52307 -13.45669 -13.14612 -12.55809 -12.46269 -12.14602 -11.71034 -11.68075 -11.59482 -11.40747 -11.25358 -10.77979 -10.60062 -10.39613 -10.21409 -9.90417 -9.56513 -8.76522 -8.39454 -7.94449 -7.20652 -6.62403 -3.82686 2.11598 2.25514 3.16267 3.17840 3.19724 3.93702 4.08707 4.63252 4.65610 5.17258 5.25243 5.31448 5.43076 5.55621 5.65371 5.75429 5.83792 5.95725 5.99192 6.00932 6.15321 6.17676 6.22706 6.27935 6.34433 6.58869 6.89046 7.13667 7.19556 7.40070 7.60112 7.93049 8.22258 8.61426 9.00404 9.24624 9.81960 10.53820 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.006313 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.697925 B = 4434.272831 C = 5005.477268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.058 3.942 3 N -0.484 5.484 4 C 0.031 3.969 5 C 0.382 3.618 6 N -0.623 5.623 7 C 0.504 3.496 8 N -0.504 5.504 9 C -0.281 4.281 10 H 0.115 0.885 11 C 0.018 3.982 12 N -0.889 5.889 13 Si 0.941 3.059 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.271 1.271 17 N -0.574 5.574 18 C 0.198 3.802 19 C -0.305 4.305 20 C -0.064 4.064 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.409 0.591 30 H 0.277 0.723 31 H 0.147 0.853 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 3.585 -5.570 12.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 N -0.207 5.207 4 C -0.117 4.117 5 C 0.139 3.861 6 N -0.352 5.352 7 C 0.148 3.852 8 N -0.115 5.115 9 C -0.413 4.413 10 H 0.133 0.867 11 C -0.186 4.186 12 N -0.526 5.526 13 Si 0.767 3.233 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.196 1.196 17 N -0.299 5.299 18 C 0.025 3.975 19 C -0.320 4.320 20 C -0.122 4.122 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.246 0.754 30 H 0.087 0.913 31 H 0.164 0.836 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.373 3.135 -4.922 11.042 hybrid contribution 0.568 -0.307 0.446 0.785 sum -8.805 2.828 -4.476 10.274 Atomic orbital electron populations 1.21794 0.94881 1.01384 1.02255 1.22023 0.95255 0.87961 1.01724 1.60177 1.08742 1.16624 1.35133 1.22336 1.00737 0.98875 0.89752 1.19327 0.87930 0.89687 0.89170 1.67692 1.03848 1.28848 1.34839 1.18870 0.84163 0.93279 0.88906 1.40557 1.04893 1.46193 1.19870 1.19950 0.79818 1.32574 1.08909 0.86699 1.25445 1.01517 0.96410 0.95219 1.69686 1.37003 1.34484 1.11432 0.85739 0.80656 0.78795 0.78066 1.19580 1.20778 1.19578 1.67883 1.39697 1.17208 1.05139 1.22446 0.89169 0.90973 0.94929 1.20334 0.95589 1.14449 1.01659 1.20070 0.97943 0.97974 0.96201 0.91968 0.92392 0.92671 0.91155 0.93513 0.91771 0.91149 0.94150 0.75379 0.91301 0.83563 0.93661 0.91961 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.84 37.16 0.37 -1.27 16 2 C 0.06 0.87 5.46 -3.82 -0.02 0.84 16 3 N -0.48 -7.94 3.80 -180.88 -0.69 -8.63 16 4 C 0.03 0.45 9.10 60.06 0.55 1.00 16 5 C 0.38 7.61 5.26 -154.85 -0.82 6.80 16 6 N -0.62 -14.39 9.98 -13.14 -0.13 -14.52 16 7 C 0.50 12.69 8.38 -322.73 -2.71 9.98 16 8 N -0.50 -13.45 5.43 -12.79 -0.07 -13.52 16 9 C -0.28 -7.63 9.69 -15.03 -0.15 -7.78 16 10 H 0.12 3.12 7.04 -52.48 -0.37 2.75 16 11 C 0.02 0.48 5.50 -17.46 -0.10 0.38 16 12 N -0.89 -24.16 13.05 55.49 0.72 -23.44 16 13 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 N -0.57 -13.75 9.09 -13.99 -0.13 -13.88 16 18 C 0.20 3.91 10.99 -17.31 -0.19 3.72 16 19 C -0.31 -5.69 5.93 -104.10 -0.62 -6.31 16 20 C -0.06 -0.92 9.84 36.00 0.35 -0.57 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.58 6.59 -51.93 -0.34 0.24 16 24 H 0.07 1.10 8.05 -51.93 -0.42 0.69 16 25 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 26 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 27 H 0.07 0.84 6.54 -51.93 -0.34 0.50 16 28 H 0.04 0.66 8.03 -51.93 -0.42 0.25 16 29 H 0.41 11.11 8.01 -40.82 -0.33 10.79 16 30 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.15 2.34 8.06 -52.49 -0.42 1.91 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.88 7.53 -51.93 -0.39 0.49 16 34 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 LS Contribution 289.13 15.07 4.36 4.36 Total: -1.00 -28.86 289.13 -8.97 -37.83 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -4.69 Total: 9.63 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -3.32 Total: 6.81 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -0.29 Total: -73.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.86 -8.97 -37.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.373 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds