Wall clock time and date at job start Sun Mar 29 2020 21:37:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46902 * 109.47210 * 2 1
4 4 C 1.46899 * 110.99988 * 66.04387 * 3 2 1
5 5 C 1.38532 * 110.99798 * 189.99935 * 3 2 1
6 6 N 1.32889 * 120.49093 * 297.67057 * 5 3 2
7 7 C 1.32487 * 120.62042 * 180.02562 * 6 5 3
8 8 N 1.38424 * 119.17839 * 180.02562 * 7 6 5
9 9 C 1.36996 * 120.00178 * 180.02562 * 8 7 6
10 10 H 1.08004 * 119.99744 * 359.97438 * 9 8 7
11 11 C 1.38826 * 120.00317 * 180.02562 * 9 8 7
12 12 N 1.31546 * 119.99972 * 359.97438 * 11 9 8
13 13 Si 1.86798 * 120.00121 * 179.97438 * 11 9 8
14 14 H 1.48501 * 109.47025 * 59.99789 * 13 11 9
15 15 H 1.48497 * 109.47033 * 179.97438 * 13 11 9
16 16 H 1.48505 * 109.46967 * 299.99822 * 13 11 9
17 17 N 1.32537 * 121.64020 * 359.72130 * 7 6 5
18 18 C 1.32443 * 120.93574 * 0.57366 * 17 7 6
19 19 C 1.38184 * 119.28908 * 359.43855 * 18 17 7
20 20 C 1.50698 * 120.75385 * 180.29773 * 19 18 17
21 21 H 1.08994 * 109.47083 * 60.00033 * 1 2 3
22 22 H 1.09001 * 109.47243 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.47283 * 300.00169 * 1 2 3
24 24 H 1.08998 * 109.47283 * 239.99831 * 2 1 3
25 25 H 1.09000 * 109.46668 * 119.99984 * 2 1 3
26 26 H 1.09003 * 109.47219 * 178.44901 * 4 3 2
27 27 H 1.09003 * 109.47050 * 298.45197 * 4 3 2
28 28 H 1.09004 * 109.47161 * 58.44813 * 4 3 2
29 29 H 0.97003 * 120.00503 * 0.02562 * 8 7 6
30 30 H 0.97000 * 120.00055 * 180.02562 * 12 11 9
31 31 H 1.07997 * 120.34966 * 179.71186 * 18 17 7
32 32 H 1.09005 * 109.47159 * 89.22084 * 20 19 18
33 33 H 1.08997 * 109.47021 * 209.21596 * 20 19 18
34 34 H 1.08996 * 109.47216 * 329.21386 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.6702 2.0669 1.2533
5 6 3.3860 1.4284 -0.2246
6 7 4.2285 0.8603 0.6318
7 6 5.5357 0.9007 0.4198
8 7 6.3861 0.2985 1.3310
9 6 7.7406 0.3306 1.1287
10 1 8.1450 0.8255 0.2580
11 6 8.5935 -0.2737 2.0423
12 7 8.1010 -0.8769 3.1026
13 14 10.4404 -0.2305 1.7660
14 1 10.9017 1.1804 1.7236
15 1 11.1238 -0.9410 2.8766
16 1 10.7640 -0.8961 0.4785
17 7 6.0490 1.4982 -0.6461
18 6 5.2680 2.0898 -1.5372
19 6 3.8985 2.0708 -1.3542
20 6 2.9787 2.7276 -2.3510
21 1 -0.3633 0.5138 -0.8899
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 1.8934 -0.5138 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 2.0683 3.0815 1.2381
27 1 0.5857 2.1037 1.3567
28 1 2.0972 1.5216 2.0950
29 1 6.0230 -0.1462 2.1129
30 1 8.6969 -1.2988 3.7411
31 1 5.6967 2.5779 -2.3999
32 1 2.7098 2.0093 -3.1256
33 1 2.0766 3.0688 -1.8430
34 1 3.4842 3.5798 -2.8052
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001163177307.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:37:28
Heat of formation + Delta-G solvation = 44.026335 kcal
Electronic energy + Delta-G solvation = -16640.308288 eV
Core-core repulsion = 13993.911864 eV
Total energy + Delta-G solvation = -2646.396425 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.133 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.75116 -38.85539 -37.00875 -34.43287 -33.71633 -32.59623 -31.15387 -28.09195
-27.16511 -26.11703 -24.55938 -22.75922 -22.02736 -19.99438 -18.90528 -18.04579
-16.94810 -16.51045 -16.08849 -15.75669 -15.39624 -15.17710 -14.97313 -14.60900
-13.83743 -13.78271 -13.50699 -13.18990 -12.98053 -12.82834 -12.70232 -12.66624
-12.48889 -12.13471 -11.95450 -11.86654 -11.54187 -11.30232 -10.59224 -9.87259
-9.62541 -8.97053 -8.53214 -5.84343 0.45166 0.57402 1.40257 1.49050
1.52976 2.20316 2.63099 2.83521 2.87980 3.39104 3.71925 4.03024
4.24411 4.31744 4.37560 4.48265 4.57554 4.59840 4.65104 4.67466
4.87014 4.99487 5.09189 5.12797 5.23651 5.35794 5.39857 5.51526
5.70274 5.79167 5.84462 6.27636 6.52163 6.67677 7.13023 7.35377
7.95810 8.64995
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034530 B = 0.006313 C = 0.005593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 810.697925 B = 4434.272831 C = 5005.477268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.056 3.944
3 N -0.473 5.473
4 C 0.032 3.968
5 C 0.365 3.635
6 N -0.642 5.642
7 C 0.501 3.499
8 N -0.535 5.535
9 C -0.304 4.304
10 H 0.106 0.894
11 C -0.028 4.028
12 N -0.929 5.929
13 Si 1.009 2.991
14 H -0.266 1.266
15 H -0.276 1.276
16 H -0.266 1.266
17 N -0.603 5.603
18 C 0.186 3.814
19 C -0.284 4.284
20 C -0.060 4.060
21 H 0.073 0.927
22 H 0.073 0.927
23 H 0.064 0.936
24 H 0.060 0.940
25 H 0.022 0.978
26 H 0.061 0.939
27 H 0.108 0.892
28 H 0.017 0.983
29 H 0.399 0.601
30 H 0.278 0.722
31 H 0.189 0.811
32 H 0.061 0.939
33 H 0.069 0.931
34 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.880 4.906 -7.605 14.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.071 4.071
3 N -0.197 5.197
4 C -0.115 4.115
5 C 0.124 3.876
6 N -0.372 5.372
7 C 0.144 3.856
8 N -0.150 5.150
9 C -0.435 4.435
10 H 0.124 0.876
11 C -0.228 4.228
12 N -0.568 5.568
13 Si 0.831 3.169
14 H -0.190 1.190
15 H -0.201 1.201
16 H -0.191 1.191
17 N -0.329 5.329
18 C 0.016 3.984
19 C -0.297 4.297
20 C -0.118 4.118
21 H 0.092 0.908
22 H 0.092 0.908
23 H 0.083 0.917
24 H 0.078 0.922
25 H 0.041 0.959
26 H 0.080 0.920
27 H 0.126 0.874
28 H 0.036 0.964
29 H 0.234 0.766
30 H 0.087 0.913
31 H 0.206 0.794
32 H 0.080 0.920
33 H 0.088 0.912
34 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -11.114 4.515 -7.046 13.912
hybrid contribution 0.738 -0.573 0.860 1.270
sum -10.376 3.942 -6.186 12.707
Atomic orbital electron populations
1.21731 0.91293 1.02840 1.03278 1.22103 0.98075 0.86773 1.00104
1.60394 1.06147 1.17400 1.35725 1.22409 1.02951 0.98029 0.88127
1.20015 0.89279 0.89066 0.89201 1.67763 1.03482 1.29732 1.36236
1.19193 0.84831 0.92626 0.88931 1.40508 1.04972 1.48864 1.20644
1.20013 0.80498 1.33740 1.09247 0.87575 1.26326 1.05743 0.95915
0.94776 1.69791 1.38299 1.36210 1.12523 0.84744 0.75167 0.78890
0.78079 1.19046 1.20120 1.19061 1.67912 1.41191 1.18146 1.05650
1.23237 0.89740 0.90225 0.95157 1.20991 0.96053 1.11460 1.01201
1.20167 0.97347 0.98912 0.95378 0.90786 0.90849 0.91658 0.92169
0.95907 0.91979 0.87414 0.96424 0.76617 0.91300 0.79441 0.91995
0.91226 0.90983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.58 9.84 71.98 0.71 -1.87 16
2 C 0.06 1.62 5.46 86.30 0.47 2.09 16
3 N -0.47 -14.62 3.80 -726.18 -2.76 -17.38 16
4 C 0.03 0.89 9.10 127.69 1.16 2.05 16
5 C 0.37 14.15 5.26 133.21 0.70 14.85 16
6 N -0.64 -30.21 9.98 -195.47 -1.95 -32.16 16
7 C 0.50 25.95 8.38 261.46 2.19 28.14 16
8 N -0.54 -30.09 5.43 -194.38 -1.06 -31.15 16
9 C -0.30 -17.26 9.69 84.03 0.81 -16.44 16
10 H 0.11 6.00 7.04 -2.91 -0.02 5.98 16
11 C -0.03 -1.53 5.50 84.88 0.47 -1.06 16
12 N -0.93 -52.75 13.05 21.65 0.28 -52.47 16
13 Si 1.01 42.83 29.55 68.60 2.03 44.86 16
14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16
15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16
16 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16
17 N -0.60 -28.98 9.09 -198.17 -1.80 -30.78 16
18 C 0.19 6.97 10.99 84.59 0.93 7.90 16
19 C -0.28 -9.83 5.93 -19.53 -0.12 -9.95 16
20 C -0.06 -1.46 9.84 71.24 0.70 -0.76 16
21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
23 H 0.06 1.14 6.59 -2.39 -0.02 1.12 16
24 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16
25 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16
26 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16
27 H 0.11 2.20 6.54 -2.39 -0.02 2.19 16
28 H 0.02 0.57 8.03 -2.38 -0.02 0.55 16
29 H 0.40 23.17 8.01 -92.71 -0.74 22.42 16
30 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16
31 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16
32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16
33 H 0.07 1.65 7.53 -2.39 -0.02 1.63 16
34 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16
Total: -1.00 -65.58 289.13 3.13 -62.45
By element:
Atomic # 1 Polarization: 31.31 SS G_CDS: 0.36 Total: 31.67 kcal
Atomic # 6 Polarization: 16.93 SS G_CDS: 8.03 Total: 24.96 kcal
Atomic # 7 Polarization: -156.65 SS G_CDS: -7.29 Total: -163.94 kcal
Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal
Total: -65.58 3.13 -62.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001163177307.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.472 kcal
(2) G-P(sol) polarization free energy of solvation -65.576 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds