Wall clock time and date at job start Sun Mar 29 2020 21:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47210 * 2 1 4 4 C 1.46899 * 110.99988 * 66.04387 * 3 2 1 5 5 C 1.38532 * 110.99798 * 189.99935 * 3 2 1 6 6 N 1.32889 * 120.49093 * 297.67057 * 5 3 2 7 7 C 1.32487 * 120.62042 * 180.02562 * 6 5 3 8 8 N 1.38424 * 119.17839 * 180.02562 * 7 6 5 9 9 C 1.36996 * 120.00178 * 180.02562 * 8 7 6 10 10 H 1.08004 * 119.99744 * 359.97438 * 9 8 7 11 11 C 1.38826 * 120.00317 * 180.02562 * 9 8 7 12 12 N 1.31546 * 119.99972 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00121 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47025 * 59.99789 * 13 11 9 15 15 H 1.48497 * 109.47033 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46967 * 299.99822 * 13 11 9 17 17 N 1.32537 * 121.64020 * 359.72130 * 7 6 5 18 18 C 1.32443 * 120.93574 * 0.57366 * 17 7 6 19 19 C 1.38184 * 119.28908 * 359.43855 * 18 17 7 20 20 C 1.50698 * 120.75385 * 180.29773 * 19 18 17 21 21 H 1.08994 * 109.47083 * 60.00033 * 1 2 3 22 22 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47283 * 300.00169 * 1 2 3 24 24 H 1.08998 * 109.47283 * 239.99831 * 2 1 3 25 25 H 1.09000 * 109.46668 * 119.99984 * 2 1 3 26 26 H 1.09003 * 109.47219 * 178.44901 * 4 3 2 27 27 H 1.09003 * 109.47050 * 298.45197 * 4 3 2 28 28 H 1.09004 * 109.47161 * 58.44813 * 4 3 2 29 29 H 0.97003 * 120.00503 * 0.02562 * 8 7 6 30 30 H 0.97000 * 120.00055 * 180.02562 * 12 11 9 31 31 H 1.07997 * 120.34966 * 179.71186 * 18 17 7 32 32 H 1.09005 * 109.47159 * 89.22084 * 20 19 18 33 33 H 1.08997 * 109.47021 * 209.21596 * 20 19 18 34 34 H 1.08996 * 109.47216 * 329.21386 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.3860 1.4284 -0.2246 6 7 4.2285 0.8603 0.6318 7 6 5.5357 0.9007 0.4198 8 7 6.3861 0.2985 1.3310 9 6 7.7406 0.3306 1.1287 10 1 8.1450 0.8255 0.2580 11 6 8.5935 -0.2737 2.0423 12 7 8.1010 -0.8769 3.1026 13 14 10.4404 -0.2305 1.7660 14 1 10.9017 1.1804 1.7236 15 1 11.1238 -0.9410 2.8766 16 1 10.7640 -0.8961 0.4785 17 7 6.0490 1.4982 -0.6461 18 6 5.2680 2.0898 -1.5372 19 6 3.8985 2.0708 -1.3542 20 6 2.9787 2.7276 -2.3510 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.0683 3.0815 1.2381 27 1 0.5857 2.1037 1.3567 28 1 2.0972 1.5216 2.0950 29 1 6.0230 -0.1462 2.1129 30 1 8.6969 -1.2988 3.7411 31 1 5.6967 2.5779 -2.3999 32 1 2.7098 2.0093 -3.1256 33 1 2.0766 3.0688 -1.8430 34 1 3.4842 3.5798 -2.8052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163177307.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:28 Heat of formation + Delta-G solvation = 44.026335 kcal Electronic energy + Delta-G solvation = -16640.308288 eV Core-core repulsion = 13993.911864 eV Total energy + Delta-G solvation = -2646.396425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75116 -38.85539 -37.00875 -34.43287 -33.71633 -32.59623 -31.15387 -28.09195 -27.16511 -26.11703 -24.55938 -22.75922 -22.02736 -19.99438 -18.90528 -18.04579 -16.94810 -16.51045 -16.08849 -15.75669 -15.39624 -15.17710 -14.97313 -14.60900 -13.83743 -13.78271 -13.50699 -13.18990 -12.98053 -12.82834 -12.70232 -12.66624 -12.48889 -12.13471 -11.95450 -11.86654 -11.54187 -11.30232 -10.59224 -9.87259 -9.62541 -8.97053 -8.53214 -5.84343 0.45166 0.57402 1.40257 1.49050 1.52976 2.20316 2.63099 2.83521 2.87980 3.39104 3.71925 4.03024 4.24411 4.31744 4.37560 4.48265 4.57554 4.59840 4.65104 4.67466 4.87014 4.99487 5.09189 5.12797 5.23651 5.35794 5.39857 5.51526 5.70274 5.79167 5.84462 6.27636 6.52163 6.67677 7.13023 7.35377 7.95810 8.64995 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.034530 B = 0.006313 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.697925 B = 4434.272831 C = 5005.477268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 N -0.473 5.473 4 C 0.032 3.968 5 C 0.365 3.635 6 N -0.642 5.642 7 C 0.501 3.499 8 N -0.535 5.535 9 C -0.304 4.304 10 H 0.106 0.894 11 C -0.028 4.028 12 N -0.929 5.929 13 Si 1.009 2.991 14 H -0.266 1.266 15 H -0.276 1.276 16 H -0.266 1.266 17 N -0.603 5.603 18 C 0.186 3.814 19 C -0.284 4.284 20 C -0.060 4.060 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.017 0.983 29 H 0.399 0.601 30 H 0.278 0.722 31 H 0.189 0.811 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.880 4.906 -7.605 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 N -0.197 5.197 4 C -0.115 4.115 5 C 0.124 3.876 6 N -0.372 5.372 7 C 0.144 3.856 8 N -0.150 5.150 9 C -0.435 4.435 10 H 0.124 0.876 11 C -0.228 4.228 12 N -0.568 5.568 13 Si 0.831 3.169 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.191 1.191 17 N -0.329 5.329 18 C 0.016 3.984 19 C -0.297 4.297 20 C -0.118 4.118 21 H 0.092 0.908 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.126 0.874 28 H 0.036 0.964 29 H 0.234 0.766 30 H 0.087 0.913 31 H 0.206 0.794 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.114 4.515 -7.046 13.912 hybrid contribution 0.738 -0.573 0.860 1.270 sum -10.376 3.942 -6.186 12.707 Atomic orbital electron populations 1.21731 0.91293 1.02840 1.03278 1.22103 0.98075 0.86773 1.00104 1.60394 1.06147 1.17400 1.35725 1.22409 1.02951 0.98029 0.88127 1.20015 0.89279 0.89066 0.89201 1.67763 1.03482 1.29732 1.36236 1.19193 0.84831 0.92626 0.88931 1.40508 1.04972 1.48864 1.20644 1.20013 0.80498 1.33740 1.09247 0.87575 1.26326 1.05743 0.95915 0.94776 1.69791 1.38299 1.36210 1.12523 0.84744 0.75167 0.78890 0.78079 1.19046 1.20120 1.19061 1.67912 1.41191 1.18146 1.05650 1.23237 0.89740 0.90225 0.95157 1.20991 0.96053 1.11460 1.01201 1.20167 0.97347 0.98912 0.95378 0.90786 0.90849 0.91658 0.92169 0.95907 0.91979 0.87414 0.96424 0.76617 0.91300 0.79441 0.91995 0.91226 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.84 71.98 0.71 -1.87 16 2 C 0.06 1.62 5.46 86.30 0.47 2.09 16 3 N -0.47 -14.62 3.80 -726.18 -2.76 -17.38 16 4 C 0.03 0.89 9.10 127.69 1.16 2.05 16 5 C 0.37 14.15 5.26 133.21 0.70 14.85 16 6 N -0.64 -30.21 9.98 -195.47 -1.95 -32.16 16 7 C 0.50 25.95 8.38 261.46 2.19 28.14 16 8 N -0.54 -30.09 5.43 -194.38 -1.06 -31.15 16 9 C -0.30 -17.26 9.69 84.03 0.81 -16.44 16 10 H 0.11 6.00 7.04 -2.91 -0.02 5.98 16 11 C -0.03 -1.53 5.50 84.88 0.47 -1.06 16 12 N -0.93 -52.75 13.05 21.65 0.28 -52.47 16 13 Si 1.01 42.83 29.55 68.60 2.03 44.86 16 14 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 17 N -0.60 -28.98 9.09 -198.17 -1.80 -30.78 16 18 C 0.19 6.97 10.99 84.59 0.93 7.90 16 19 C -0.28 -9.83 5.93 -19.53 -0.12 -9.95 16 20 C -0.06 -1.46 9.84 71.24 0.70 -0.76 16 21 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.14 6.59 -2.39 -0.02 1.12 16 24 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 25 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 26 H 0.06 1.75 8.11 -2.39 -0.02 1.73 16 27 H 0.11 2.20 6.54 -2.39 -0.02 2.19 16 28 H 0.02 0.57 8.03 -2.38 -0.02 0.55 16 29 H 0.40 23.17 8.01 -92.71 -0.74 22.42 16 30 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.19 5.30 8.06 -2.91 -0.02 5.28 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.07 1.65 7.53 -2.39 -0.02 1.63 16 34 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 Total: -1.00 -65.58 289.13 3.13 -62.45 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: 0.36 Total: 31.67 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 8.03 Total: 24.96 kcal Atomic # 7 Polarization: -156.65 SS G_CDS: -7.29 Total: -163.94 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.58 3.13 -62.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163177307.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.472 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds