Wall clock time and date at job start Sun Mar 29 2020 22:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.37284 * 2 1 4 4 C 1.38559 * 119.49939 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.83673 * 179.97438 * 4 3 2 6 6 C 1.40132 * 118.32882 * 359.93964 * 4 3 2 7 7 C 1.43194 * 120.62931 * 180.29449 * 6 4 3 8 8 N 4.80603 * 135.09941 * 359.84161 * 3 1 2 9 9 C 1.40625 * 118.74550 * 0.02562 * 6 4 3 10 10 N 1.38293 * 119.82083 * 180.02562 * 9 6 4 11 11 C 1.36880 * 119.99632 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00104 * 0.02562 * 11 10 9 13 13 C 1.38854 * 119.99850 * 180.02562 * 11 10 9 14 14 N 1.31529 * 120.00012 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00238 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46982 * 89.99975 * 15 13 11 17 17 H 1.48493 * 109.47540 * 210.00199 * 15 13 11 18 18 H 1.48502 * 109.47054 * 330.00265 * 15 13 11 19 19 N 1.31831 * 119.36999 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47302 * 270.01953 * 1 2 3 21 21 H 1.08998 * 109.47237 * 30.02774 * 1 2 3 22 22 H 1.09001 * 109.47140 * 150.01991 * 1 2 3 23 23 H 1.08008 * 120.25153 * 359.97438 * 3 2 1 24 24 H 0.96995 * 120.00111 * 0.02562 * 10 9 6 25 25 H 0.97001 * 119.99792 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2055 0.0000 4 6 3.5712 1.2086 -0.0005 5 17 4.4577 2.7011 -0.0012 6 6 4.2389 -0.0234 0.0002 7 6 5.6698 -0.0777 0.0061 8 7 6.8050 -0.1208 0.0094 9 6 3.4771 -1.2055 0.0010 10 7 4.1131 -2.4335 0.0023 11 6 3.3752 -3.5863 0.0024 12 1 2.2963 -3.5369 0.0012 13 6 4.0137 -4.8193 0.0043 14 7 3.3046 -5.9271 0.0040 15 14 5.8797 -4.9049 0.0058 16 1 6.3731 -4.9260 1.4063 17 1 6.3193 -6.1394 -0.6925 18 1 6.4302 -3.7170 -0.6951 19 7 2.1536 -1.1489 0.0005 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6394 2.1374 -0.0004 24 1 5.0820 -2.4778 0.0030 25 1 3.7507 -6.7885 0.0049 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182073.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:50 Heat of formation + Delta-G solvation = 55.924584 kcal Electronic energy + Delta-G solvation = -13809.781046 eV Core-core repulsion = 11235.224881 eV Total energy + Delta-G solvation = -2574.556165 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73209 -36.56195 -36.19920 -35.56969 -32.80309 -31.90770 -30.36874 -27.65953 -25.06489 -22.40204 -21.70180 -19.10901 -18.07844 -16.86903 -16.04366 -14.83554 -14.56421 -14.46191 -13.57855 -13.34162 -13.09119 -12.65359 -12.55372 -12.38307 -12.27084 -12.13282 -11.90984 -11.75875 -11.41801 -10.92167 -10.70348 -10.40717 -10.39559 -9.18139 -8.81137 -8.78783 -7.54657 -6.86476 -4.11887 1.27067 1.91198 2.27639 2.86361 2.86918 2.93702 3.22027 3.57126 3.70783 4.06881 4.32241 4.60667 4.87611 5.07611 5.55186 5.69741 5.79172 5.94408 6.02949 6.20754 6.43006 6.47908 6.91978 7.06988 7.62836 8.08993 8.13927 8.45103 8.80065 9.07885 10.21355 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.009155 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.706829 B = 3057.796917 C = 4151.357656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.226 3.774 3 C -0.293 4.293 4 C 0.120 3.880 5 Cl -0.072 7.072 6 C -0.223 4.223 7 C 0.273 3.727 8 N -0.460 5.460 9 C 0.388 3.612 10 N -0.518 5.518 11 C -0.286 4.286 12 H 0.142 0.858 13 C 0.049 3.951 14 N -0.839 5.839 15 Si 0.869 3.131 16 H -0.261 1.261 17 H -0.264 1.264 18 H -0.264 1.264 19 N -0.518 5.518 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.132 0.868 24 H 0.389 0.611 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.385 9.894 0.021 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.073 3.927 3 C -0.320 4.320 4 C 0.083 3.917 5 Cl -0.043 7.043 6 C -0.239 4.239 7 C -0.039 4.039 8 N -0.139 5.139 9 C 0.140 3.860 10 N -0.119 5.119 11 C -0.416 4.416 12 H 0.160 0.840 13 C -0.161 4.161 14 N -0.471 5.471 15 Si 0.694 3.306 16 H -0.185 1.185 17 H -0.188 1.188 18 H -0.189 1.189 19 N -0.236 5.236 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.097 0.903 23 H 0.150 0.850 24 H 0.226 0.774 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.945 8.446 0.026 8.667 hybrid contribution 1.536 0.675 -0.007 1.677 sum -0.409 9.121 0.019 9.130 Atomic orbital electron populations 1.20715 0.89067 1.03216 1.02945 1.20904 0.96143 0.86909 0.88755 1.20928 0.91045 0.99476 1.20543 1.20727 0.91838 0.84486 0.94612 1.98352 1.76257 1.33304 1.96410 1.15516 0.84583 0.92583 1.31215 1.25361 0.92318 0.93700 0.92498 1.81132 1.11898 1.07288 1.13607 1.17370 0.87711 0.83398 0.97514 1.41363 1.07631 1.03650 1.59286 1.19904 0.95322 0.80933 1.45445 0.84033 1.25180 0.99387 0.95048 0.96484 1.69644 1.36640 0.98067 1.42756 0.86740 0.83992 0.79743 0.80143 1.18534 1.18812 1.18877 1.67063 1.06720 1.28271 1.21591 0.90362 0.90892 0.90303 0.84984 0.77447 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.16 36.01 0.37 -0.88 15 2 C 0.23 3.75 6.78 -82.55 -0.56 3.19 15 3 C -0.29 -4.53 9.53 -39.43 -0.38 -4.91 15 4 C 0.12 2.06 6.40 -38.75 -0.25 1.81 15 5 Cl -0.07 -1.11 28.18 -51.86 -1.46 -2.57 15 6 C -0.22 -4.42 5.78 -106.36 -0.61 -5.03 15 7 C 0.27 5.62 13.28 -22.47 -0.30 5.32 15 8 N -0.46 -9.83 18.54 41.84 0.78 -9.06 15 9 C 0.39 8.35 7.44 -155.08 -1.15 7.19 15 10 N -0.52 -11.96 5.14 -10.94 -0.06 -12.01 15 11 C -0.29 -7.18 10.18 -15.07 -0.15 -7.33 15 12 H 0.14 3.81 7.30 -52.49 -0.38 3.43 15 13 C 0.05 1.21 5.50 -17.45 -0.10 1.11 15 14 N -0.84 -21.76 13.96 55.49 0.77 -20.99 15 15 Si 0.87 18.68 27.73 -169.99 -4.71 13.97 15 16 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 18 H -0.26 -5.66 6.52 56.52 0.37 -5.29 15 19 N -0.52 -10.64 8.97 -8.40 -0.08 -10.72 15 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.07 0.69 8.07 -51.93 -0.42 0.27 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.13 1.64 8.06 -52.48 -0.42 1.22 15 24 H 0.39 8.77 4.59 -40.82 -0.19 8.58 15 25 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 250.92 15.07 3.78 3.78 Total: -1.00 -26.16 250.92 -5.54 -31.69 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -1.43 Total: 5.42 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.13 Total: 0.48 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 1.42 Total: -52.77 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.71 Total: 13.97 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.46 Total: -2.57 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.16 -5.54 -31.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182073.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.618 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds