Wall clock time and date at job start Sun Mar 29 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38339 * 119.37284 * 2 1 4 4 C 1.38559 * 119.49939 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 120.83673 * 179.97438 * 4 3 2 6 6 C 1.40132 * 118.32882 * 359.93964 * 4 3 2 7 7 C 1.43194 * 120.62931 * 180.29449 * 6 4 3 8 8 N 4.80603 * 135.09941 * 359.84161 * 3 1 2 9 9 C 1.40625 * 118.74550 * 0.02562 * 6 4 3 10 10 N 1.38293 * 119.82083 * 180.02562 * 9 6 4 11 11 C 1.36880 * 119.99632 * 180.02562 * 10 9 6 12 12 H 1.08002 * 120.00104 * 0.02562 * 11 10 9 13 13 C 1.38854 * 119.99850 * 180.02562 * 11 10 9 14 14 N 1.31529 * 120.00012 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00238 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.46982 * 89.99975 * 15 13 11 17 17 H 1.48493 * 109.47540 * 210.00199 * 15 13 11 18 18 H 1.48502 * 109.47054 * 330.00265 * 15 13 11 19 19 N 1.31831 * 119.36999 * 179.97438 * 2 1 3 20 20 H 1.08995 * 109.47302 * 270.01953 * 1 2 3 21 21 H 1.08998 * 109.47237 * 30.02774 * 1 2 3 22 22 H 1.09001 * 109.47140 * 150.01991 * 1 2 3 23 23 H 1.08008 * 120.25153 * 359.97438 * 3 2 1 24 24 H 0.96995 * 120.00111 * 0.02562 * 10 9 6 25 25 H 0.97001 * 119.99792 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2055 0.0000 4 6 3.5712 1.2086 -0.0005 5 17 4.4577 2.7011 -0.0012 6 6 4.2389 -0.0234 0.0002 7 6 5.6698 -0.0777 0.0061 8 7 6.8050 -0.1208 0.0094 9 6 3.4771 -1.2055 0.0010 10 7 4.1131 -2.4335 0.0023 11 6 3.3752 -3.5863 0.0024 12 1 2.2963 -3.5369 0.0012 13 6 4.0137 -4.8193 0.0043 14 7 3.3046 -5.9271 0.0040 15 14 5.8797 -4.9049 0.0058 16 1 6.3731 -4.9260 1.4063 17 1 6.3193 -6.1394 -0.6925 18 1 6.4302 -3.7170 -0.6951 19 7 2.1536 -1.1489 0.0005 20 1 -0.3633 0.0004 1.0276 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6394 2.1374 -0.0004 24 1 5.0820 -2.4778 0.0030 25 1 3.7507 -6.7885 0.0049 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182073.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:49 Heat of formation + Delta-G solvation = 40.953896 kcal Electronic energy + Delta-G solvation = -13810.430224 eV Core-core repulsion = 11235.224881 eV Total energy + Delta-G solvation = -2575.205342 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.30934 -37.99091 -37.78944 -37.16736 -34.47349 -33.41637 -31.88380 -29.01571 -26.76229 -23.82861 -23.29943 -20.81242 -19.67012 -18.44405 -17.61751 -16.51139 -16.02134 -15.99824 -15.08409 -15.06145 -14.50804 -14.30282 -14.01421 -13.88736 -13.87232 -13.47167 -13.24121 -13.00530 -12.91360 -12.62028 -12.16170 -12.02817 -11.88905 -10.85985 -10.31949 -10.30344 -9.13689 -8.62840 -5.99349 -0.24057 0.43391 0.87967 1.17604 1.19813 1.21139 1.57056 1.97414 1.99637 2.47304 2.68695 2.99313 3.16588 3.69165 4.13477 4.28739 4.36735 4.66714 4.99461 5.00642 5.09878 5.27719 5.33547 5.60238 5.95437 6.34003 6.44323 6.79865 7.03448 7.48292 8.50616 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.009155 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.706829 B = 3057.796917 C = 4151.357656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.224 3.776 3 C -0.256 4.256 4 C 0.110 3.890 5 Cl -0.047 7.047 6 C -0.230 4.230 7 C 0.280 3.720 8 N -0.474 5.474 9 C 0.404 3.596 10 N -0.550 5.550 11 C -0.299 4.299 12 H 0.110 0.890 13 C 0.007 3.993 14 N -0.896 5.896 15 Si 0.923 3.077 16 H -0.259 1.259 17 H -0.257 1.257 18 H -0.266 1.266 19 N -0.555 5.555 20 H 0.097 0.903 21 H 0.112 0.888 22 H 0.069 0.931 23 H 0.179 0.821 24 H 0.388 0.612 25 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 13.446 0.037 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.075 3.925 3 C -0.280 4.280 4 C 0.074 3.926 5 Cl -0.017 7.017 6 C -0.246 4.246 7 C -0.032 4.032 8 N -0.153 5.153 9 C 0.159 3.841 10 N -0.157 5.157 11 C -0.429 4.429 12 H 0.128 0.872 13 C -0.197 4.197 14 N -0.532 5.532 15 Si 0.746 3.254 16 H -0.183 1.183 17 H -0.181 1.181 18 H -0.191 1.191 19 N -0.275 5.275 20 H 0.116 0.884 21 H 0.131 0.869 22 H 0.088 0.912 23 H 0.196 0.804 24 H 0.224 0.776 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.656 12.093 0.041 12.381 hybrid contribution 1.540 0.195 -0.009 1.553 sum -1.116 12.288 0.032 12.338 Atomic orbital electron populations 1.20916 0.85542 1.04797 1.04615 1.21844 0.98430 0.86199 0.86029 1.21535 0.90378 1.00877 1.15258 1.20927 0.92750 0.84699 0.94266 1.98371 1.75950 1.31224 1.96190 1.15714 0.84310 0.93239 1.31307 1.25476 0.92454 0.93221 0.92069 1.81134 1.12373 1.07809 1.13956 1.17841 0.88509 0.83630 0.94158 1.41161 1.07224 1.03429 1.63847 1.19490 0.94083 0.82105 1.47209 0.87209 1.25655 1.02678 0.94599 0.96725 1.69726 1.37870 0.98454 1.47167 0.85932 0.79905 0.79562 0.80018 1.18337 1.18123 1.19089 1.67220 1.06467 1.30669 1.23137 0.88414 0.86917 0.91183 0.80363 0.77589 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 10.16 71.24 0.72 -1.30 15 2 C 0.22 6.62 6.78 42.58 0.29 6.90 15 3 C -0.26 -6.55 9.53 22.37 0.21 -6.33 15 4 C 0.11 3.37 6.40 22.81 0.15 3.52 15 5 Cl -0.05 -1.24 28.18 -2.72 -0.08 -1.32 15 6 C -0.23 -8.67 5.78 -20.99 -0.12 -8.79 15 7 C 0.28 11.10 13.28 88.33 1.17 12.27 15 8 N -0.47 -19.63 18.54 19.00 0.35 -19.28 15 9 C 0.40 17.22 7.44 133.65 0.99 18.22 15 10 N -0.55 -26.00 5.14 -188.52 -0.97 -26.97 15 11 C -0.30 -15.79 10.18 84.05 0.86 -14.93 15 12 H 0.11 6.32 7.30 -2.91 -0.02 6.30 15 13 C 0.01 0.37 5.50 84.89 0.47 0.83 15 14 N -0.90 -49.32 13.96 21.65 0.30 -49.02 15 15 Si 0.92 40.08 27.73 68.60 1.90 41.98 15 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 18 H -0.27 -11.39 6.52 99.48 0.65 -10.74 15 19 N -0.56 -22.24 8.97 -180.50 -1.62 -23.86 15 20 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 21 H 0.11 1.41 8.07 -2.39 -0.02 1.39 15 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 15 23 H 0.18 3.06 8.06 -2.91 -0.02 3.03 15 24 H 0.39 17.85 4.59 -92.71 -0.43 17.42 15 25 H 0.29 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -59.35 250.92 5.40 -53.95 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.76 Total: 14.13 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 4.74 Total: 10.38 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -1.93 Total: -119.13 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 1.90 Total: 41.98 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -59.35 5.40 -53.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182073.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.908 kcal (2) G-P(sol) polarization free energy of solvation -59.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds