Wall clock time and date at job start Sun Mar 29 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86792 * 119.99939 * 2 1 4 4 H 1.48499 * 109.47505 * 270.00169 * 3 2 1 5 5 H 1.48498 * 109.47170 * 30.00340 * 3 2 1 6 6 H 1.48504 * 109.47209 * 150.00334 * 3 2 1 7 7 C 1.38802 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00065 * 359.97438 * 7 2 1 9 9 N 1.36866 * 119.99941 * 179.97438 * 7 2 1 10 10 C 1.38752 * 119.99858 * 179.97438 * 9 7 2 11 11 N 1.32442 * 119.94255 * 359.97438 * 10 9 7 12 12 C 1.32366 * 122.43632 * 180.02562 * 11 10 9 13 13 Cl 1.73593 * 119.30600 * 180.27312 * 12 11 10 14 14 C 1.36755 * 121.39016 * 359.97438 * 12 11 10 15 15 C 1.40040 * 118.86852 * 0.02562 * 14 12 11 16 16 C 1.46004 * 135.15669 * 180.02562 * 15 14 12 17 17 C 1.34486 * 106.95965 * 179.97438 * 16 15 14 18 18 N 1.36621 * 109.91377 * 359.97438 * 17 16 15 19 19 H 0.96997 * 125.05129 * 179.97438 * 18 17 16 20 20 C 1.37535 * 109.89062 * 359.97438 * 18 17 16 21 21 H 0.97005 * 120.00248 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99766 * 0.02562 * 9 7 2 23 23 H 1.08004 * 120.56158 * 179.97438 * 14 12 11 24 24 H 1.08006 * 126.51893 * 359.97438 * 16 15 14 25 25 H 1.07996 * 125.04045 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0465 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0098 -1.2021 -0.0005 8 1 1.4698 -2.1374 -0.0005 9 7 3.3784 -1.2021 -0.0011 10 6 4.0722 -2.4037 -0.0011 11 7 3.4088 -3.5500 0.0000 12 6 4.0201 -4.7241 0.0005 13 17 3.0698 -6.1768 -0.0054 14 6 5.3845 -4.8167 -0.0005 15 6 6.1421 -3.6390 -0.0016 16 6 7.5681 -3.3254 -0.0032 17 6 7.6750 -1.9848 -0.0042 18 7 6.4315 -1.4189 -0.0038 19 1 6.2534 -0.4654 -0.0040 20 6 5.4698 -2.4022 -0.0032 21 1 -0.4851 0.8401 0.0004 22 1 3.8634 -0.3620 -0.0007 23 1 5.8694 -5.7818 0.0004 24 1 8.3823 -4.0351 -0.0036 25 1 8.6056 -1.4369 -0.0051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163182281.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:36 Heat of formation + Delta-G solvation = 71.106853 kcal Electronic energy + Delta-G solvation = -13984.474952 eV Core-core repulsion = 11410.577140 eV Total energy + Delta-G solvation = -2573.897812 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86435 -37.63540 -36.08559 -35.01699 -32.38440 -30.75285 -29.14801 -28.27074 -24.73711 -22.33120 -21.51872 -20.07066 -19.06956 -17.38601 -16.73819 -15.56993 -14.83349 -14.46911 -14.42201 -14.18586 -13.25449 -12.85533 -12.78437 -12.34806 -11.98719 -11.87759 -11.38923 -11.16065 -10.84335 -10.49725 -10.19946 -10.05096 -9.27770 -8.58547 -8.52847 -8.03787 -6.81684 -6.57358 -3.84480 1.78401 2.18736 2.65230 2.81674 2.89735 2.97376 3.17917 3.49399 3.86301 4.34829 4.53207 5.09254 5.11863 5.37600 5.59278 5.85410 6.00636 6.20749 6.31622 6.73224 6.96396 7.07870 7.25246 7.46254 7.81196 7.92362 8.41342 8.71986 9.06634 9.34066 10.53511 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.021131 B = 0.009886 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.757619 B = 2831.500828 C = 4146.415454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.037 3.963 3 Si 0.878 3.122 4 H -0.267 1.267 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.281 4.281 8 H 0.135 0.865 9 N -0.555 5.555 10 C 0.406 3.594 11 N -0.548 5.548 12 C 0.227 3.773 13 Cl -0.069 7.069 14 C -0.247 4.247 15 C -0.023 4.023 16 C -0.218 4.218 17 C 0.046 3.954 18 N -0.576 5.576 19 H 0.408 0.592 20 C -0.036 4.036 21 H 0.278 0.722 22 H 0.381 0.619 23 H 0.121 0.879 24 H 0.142 0.858 25 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.821 -1.685 -0.034 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.168 4.168 3 Si 0.704 3.296 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.411 4.411 8 H 0.153 0.847 9 N -0.166 5.166 10 C 0.158 3.842 11 N -0.275 5.275 12 C 0.066 3.934 13 Cl -0.040 7.040 14 C -0.276 4.276 15 C -0.034 4.034 16 C -0.245 4.245 17 C -0.085 4.085 18 N -0.178 5.178 19 H 0.244 0.756 20 C -0.149 4.149 21 H 0.089 0.911 22 H 0.215 0.785 23 H 0.139 0.861 24 H 0.160 0.840 25 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.278 -1.420 -0.036 11.368 hybrid contribution 1.165 1.603 0.028 1.982 sum 12.443 0.183 -0.008 12.444 Atomic orbital electron populations 1.69679 1.05511 1.28021 1.46583 1.25102 0.95674 0.98151 0.97871 0.86669 0.79702 0.84084 0.79120 1.19250 1.19532 1.19815 1.19747 0.78732 0.97379 1.45241 0.84713 1.41115 1.07098 1.02621 1.65740 1.16733 0.82692 0.86580 0.98176 1.66257 1.38030 0.95197 1.28003 1.20255 0.87288 0.86946 0.98884 1.98322 1.74986 1.33848 1.96888 1.19895 0.90947 0.97298 1.19508 1.18750 0.92776 0.90991 1.00850 1.21398 0.93992 0.94190 1.14888 1.21701 0.87592 0.94028 1.05209 1.41497 1.04716 1.07628 1.63938 0.75637 1.18634 0.89830 0.89561 1.16835 0.91120 0.78451 0.86087 0.84043 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.90 13.97 55.49 0.77 -23.13 15 2 C 0.04 0.97 5.50 -17.45 -0.10 0.88 15 3 Si 0.88 18.34 27.73 -169.99 -4.71 13.63 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 5 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 6 H -0.27 -5.17 6.52 56.52 0.37 -4.80 15 7 C -0.28 -7.50 10.19 -15.10 -0.15 -7.65 15 8 H 0.14 4.05 7.32 -52.49 -0.38 3.67 15 9 N -0.56 -12.86 5.22 -11.06 -0.06 -12.92 15 10 C 0.41 9.28 7.46 -154.99 -1.16 8.12 15 11 N -0.55 -13.21 9.04 -9.72 -0.09 -13.30 15 12 C 0.23 4.84 7.23 -17.86 -0.13 4.71 15 13 Cl -0.07 -1.28 29.08 -51.86 -1.51 -2.79 15 14 C -0.25 -4.73 9.86 -39.44 -0.39 -5.12 15 15 C -0.02 -0.43 6.44 -105.15 -0.68 -1.11 15 16 C -0.22 -3.21 11.07 -37.80 -0.42 -3.63 15 17 C 0.05 0.58 11.82 -16.74 -0.20 0.39 15 18 N -0.58 -8.71 6.05 -10.50 -0.06 -8.77 15 19 H 0.41 5.13 8.93 -40.82 -0.36 4.76 15 20 C -0.04 -0.70 7.17 -83.78 -0.60 -1.31 15 21 H 0.28 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.38 7.80 5.72 -40.82 -0.23 7.56 15 23 H 0.12 2.02 8.06 -52.48 -0.42 1.60 15 24 H 0.14 1.69 8.06 -52.48 -0.42 1.27 15 25 H 0.16 1.36 8.06 -52.49 -0.42 0.93 15 LS Contribution 243.02 15.07 3.66 3.66 Total: -1.00 -29.71 243.02 -7.23 -36.94 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -1.42 Total: 11.41 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -3.82 Total: -4.72 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.57 Total: -58.12 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.71 Total: 13.63 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.51 Total: -2.79 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.71 -7.23 -36.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182281.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.045 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds