Wall clock time and date at job start Sun Mar 29 2020 22:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00171 * 2 1 4 4 H 1.48499 * 109.47197 * 240.00164 * 3 2 1 5 5 H 1.48493 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47171 * 120.00277 * 3 2 1 7 7 C 1.38718 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00471 * 180.02562 * 7 2 1 9 9 N 1.36803 * 119.99327 * 359.97438 * 7 2 1 10 10 C 1.38978 * 119.99394 * 180.02562 * 9 7 2 11 11 C 1.38193 * 120.48794 * 0.02562 * 10 9 7 12 12 C 1.40128 * 119.35238 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.87481 * 179.97438 * 12 11 10 14 14 C 1.35538 * 120.24670 * 359.97438 * 12 11 10 15 15 N 1.36105 * 120.88760 * 0.02562 * 14 12 11 16 16 N 1.40261 * 132.90935 * 180.02562 * 15 14 12 17 17 C 1.31784 * 107.05832 * 179.97438 * 16 15 14 18 18 N 1.39375 * 125.29435 * 179.97438 * 17 16 15 19 19 N 1.32974 * 109.41133 * 0.26772 * 17 16 15 20 20 C 1.32858 * 109.61745 * 359.55542 * 19 17 16 21 21 H 0.97006 * 120.00157 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00798 * 0.02562 * 9 7 2 23 23 H 1.07998 * 120.32005 * 359.97438 * 11 10 9 24 24 H 1.07995 * 119.55743 * 180.02562 * 14 12 11 25 25 H 0.96996 * 120.00242 * 0.02794 * 18 17 16 26 26 H 0.97004 * 119.99632 * 179.75104 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6964 1.2124 7 6 2.0100 -1.2013 -0.0005 8 1 3.0900 -1.2013 -0.0001 9 7 1.3259 -2.3860 -0.0005 10 6 2.0208 -3.5896 -0.0005 11 6 3.4027 -3.6013 0.0000 12 6 4.0792 -4.8284 0.0005 13 9 5.4299 -4.8522 0.0005 14 6 3.3834 -5.9916 0.0010 15 7 2.0224 -5.9916 0.0005 16 7 1.0674 -7.0190 0.0013 17 6 -0.1186 -6.4444 0.0008 18 7 -1.3393 -7.1170 0.0008 19 7 0.0306 -5.1230 -0.0061 20 6 1.3241 -4.8201 -0.0005 21 1 -0.4851 0.8401 -0.0004 22 1 0.3559 -2.3861 -0.0005 23 1 3.9558 -2.6737 0.0000 24 1 3.9161 -6.9310 0.0019 25 1 -1.3587 -8.0868 0.0016 26 1 -2.1694 -6.6152 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:48 Heat of formation + Delta-G solvation = 80.069994 kcal Electronic energy + Delta-G solvation = -16029.807189 eV Core-core repulsion = 13060.254424 eV Total energy + Delta-G solvation = -2969.552765 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.28684 -41.62427 -37.47156 -35.68814 -33.30431 -32.82478 -30.82039 -28.87051 -27.77195 -25.35762 -22.67759 -22.00007 -20.59651 -18.65484 -17.98723 -16.93002 -16.41520 -15.60395 -15.45428 -15.25059 -14.85897 -14.63042 -14.56426 -14.06881 -13.78440 -12.36772 -12.36285 -11.98703 -11.73415 -11.67111 -11.15658 -10.89590 -10.65264 -10.40121 -9.78347 -9.43239 -9.32417 -8.68238 -7.81665 -7.08552 -6.69840 -4.13273 1.70654 1.90012 2.78446 2.95614 2.95998 2.98334 3.58785 3.68203 3.91072 4.13483 4.67412 4.76408 4.94123 4.99606 5.67523 5.95800 6.02846 6.52685 6.72322 6.77266 6.95635 7.04766 7.22713 7.40433 7.55186 7.81537 7.97036 8.22309 8.72540 8.96637 8.99022 10.03366 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.008259 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.499513 B = 3389.618379 C = 4561.275048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.293 4.293 8 H 0.118 0.882 9 N -0.483 5.483 10 C 0.207 3.793 11 C -0.312 4.312 12 C 0.169 3.831 13 F -0.137 7.137 14 C -0.120 4.120 15 N -0.220 5.220 16 N -0.391 5.391 17 C 0.472 3.528 18 N -0.828 5.828 19 N -0.580 5.580 20 C 0.266 3.734 21 H 0.288 0.712 22 H 0.415 0.585 23 H 0.141 0.859 24 H 0.150 0.850 25 H 0.408 0.592 26 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -4.137 0.022 4.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.180 4.180 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.424 4.424 8 H 0.136 0.864 9 N -0.076 5.076 10 C 0.074 3.926 11 C -0.347 4.347 12 C 0.145 3.855 13 F -0.115 7.115 14 C -0.250 4.250 15 N 0.006 4.994 16 N -0.236 5.236 17 C 0.102 3.898 18 N -0.385 5.385 19 N -0.318 5.318 20 C 0.007 3.993 21 H 0.098 0.902 22 H 0.252 0.748 23 H 0.159 0.841 24 H 0.168 0.832 25 H 0.238 0.762 26 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.912 -4.140 0.012 4.240 hybrid contribution -0.066 0.610 0.008 0.613 sum 0.846 -3.531 0.020 3.631 Atomic orbital electron populations 1.69729 1.06475 1.30378 1.41781 1.25674 0.95917 1.01081 0.95369 0.85644 0.78957 0.78491 0.79898 1.18884 1.20177 1.18890 1.20103 0.94088 0.81950 1.46270 0.86398 1.41084 1.09515 1.01841 1.55144 1.16145 0.90038 0.82237 1.04144 1.19804 0.91317 0.96664 1.26926 1.16032 0.76203 0.92563 1.00705 1.91431 1.28615 1.97337 1.94163 1.19604 0.79625 0.98734 1.27052 1.45922 1.05139 1.04400 1.43982 1.78405 0.95231 1.06834 1.43154 1.20194 0.87327 0.87264 0.95011 1.40735 1.01906 1.08222 1.87620 1.70382 1.14561 1.12336 1.34550 1.20740 0.86815 0.88795 1.02982 0.90159 0.74822 0.84125 0.83201 0.76234 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -20.58 13.05 55.49 0.72 -19.86 15 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 15 3 Si 0.95 17.51 29.55 -169.99 -5.02 12.49 15 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 5 H -0.28 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.29 -6.81 9.55 -15.16 -0.14 -6.96 15 8 H 0.12 2.56 5.71 -52.49 -0.30 2.26 15 9 N -0.48 -11.43 5.43 -9.35 -0.05 -11.48 15 10 C 0.21 4.73 6.67 -83.43 -0.56 4.17 15 11 C -0.31 -6.57 9.36 -38.89 -0.36 -6.94 15 12 C 0.17 3.33 7.25 -39.84 -0.29 3.04 15 13 F -0.14 -2.46 17.26 2.25 0.04 -2.42 15 14 C -0.12 -2.39 11.15 -16.62 -0.19 -2.58 15 15 N -0.22 -4.85 3.89 -12.08 -0.05 -4.90 15 16 N -0.39 -8.38 12.81 29.92 0.38 -7.99 15 17 C 0.47 9.59 9.38 -321.67 -3.02 6.57 15 18 N -0.83 -12.06 9.12 29.93 0.27 -11.78 15 19 N -0.58 -13.12 11.27 -13.04 -0.15 -13.27 15 20 C 0.27 6.14 7.75 -156.25 -1.21 4.93 15 21 H 0.29 6.47 8.31 -40.82 -0.34 6.13 15 22 H 0.41 10.25 7.91 -40.82 -0.32 9.93 15 23 H 0.14 2.83 6.00 -52.49 -0.31 2.52 15 24 H 0.15 2.63 8.06 -52.49 -0.42 2.20 15 25 H 0.41 4.77 8.96 -40.82 -0.37 4.40 15 26 H 0.41 5.15 8.96 -40.82 -0.37 4.79 15 LS Contribution 244.23 15.07 3.68 3.68 Total: -1.00 -26.78 244.23 -7.26 -34.04 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -1.23 Total: 18.70 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -5.87 Total: 2.81 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: 1.14 Total: -69.29 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.02 Total: 12.49 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.78 -7.26 -34.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.106 kcal (2) G-P(sol) polarization free energy of solvation -26.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds