Wall clock time and date at job start Sun Mar 29 2020 22:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00171 * 2 1 4 4 H 1.48499 * 109.47197 * 240.00164 * 3 2 1 5 5 H 1.48493 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47171 * 120.00277 * 3 2 1 7 7 C 1.38718 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00471 * 180.02562 * 7 2 1 9 9 N 1.36803 * 119.99327 * 359.97438 * 7 2 1 10 10 C 1.38978 * 119.99394 * 180.02562 * 9 7 2 11 11 C 1.38193 * 120.48794 * 0.02562 * 10 9 7 12 12 C 1.40128 * 119.35238 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.87481 * 179.97438 * 12 11 10 14 14 C 1.35538 * 120.24670 * 359.97438 * 12 11 10 15 15 N 1.36105 * 120.88760 * 0.02562 * 14 12 11 16 16 N 1.40261 * 132.90935 * 180.02562 * 15 14 12 17 17 C 1.31784 * 107.05832 * 179.97438 * 16 15 14 18 18 N 1.39375 * 125.29435 * 179.97438 * 17 16 15 19 19 N 1.32974 * 109.41133 * 0.26772 * 17 16 15 20 20 C 1.32858 * 109.61745 * 359.55542 * 19 17 16 21 21 H 0.97006 * 120.00157 * 0.02562 * 1 2 3 22 22 H 0.96996 * 120.00798 * 0.02562 * 9 7 2 23 23 H 1.07998 * 120.32005 * 359.97438 * 11 10 9 24 24 H 1.07995 * 119.55743 * 180.02562 * 14 12 11 25 25 H 0.96996 * 120.00242 * 0.02794 * 18 17 16 26 26 H 0.97004 * 119.99632 * 179.75104 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1042 1.6964 1.2124 7 6 2.0100 -1.2013 -0.0005 8 1 3.0900 -1.2013 -0.0001 9 7 1.3259 -2.3860 -0.0005 10 6 2.0208 -3.5896 -0.0005 11 6 3.4027 -3.6013 0.0000 12 6 4.0792 -4.8284 0.0005 13 9 5.4299 -4.8522 0.0005 14 6 3.3834 -5.9916 0.0010 15 7 2.0224 -5.9916 0.0005 16 7 1.0674 -7.0190 0.0013 17 6 -0.1186 -6.4444 0.0008 18 7 -1.3393 -7.1170 0.0008 19 7 0.0306 -5.1230 -0.0061 20 6 1.3241 -4.8201 -0.0005 21 1 -0.4851 0.8401 -0.0004 22 1 0.3559 -2.3861 -0.0005 23 1 3.9558 -2.6737 0.0000 24 1 3.9161 -6.9310 0.0019 25 1 -1.3587 -8.0868 0.0016 26 1 -2.1694 -6.6152 0.0040 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186945.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:47 Heat of formation + Delta-G solvation = 64.648510 kcal Electronic energy + Delta-G solvation = -16030.475914 eV Core-core repulsion = 13060.254424 eV Total energy + Delta-G solvation = -2970.221491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 237.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.82258 -43.29418 -39.14222 -37.32466 -34.79386 -34.44691 -32.50774 -30.49790 -29.45497 -27.05259 -24.37605 -23.62882 -22.21055 -20.33985 -19.59785 -18.50588 -17.97429 -17.26661 -17.01217 -16.77836 -16.37934 -16.19100 -16.18988 -15.62197 -15.35536 -14.03502 -14.02876 -13.58524 -13.38156 -13.24215 -12.67077 -12.51967 -12.16487 -12.03176 -11.41681 -11.00202 -10.97581 -10.35485 -9.34207 -8.74076 -8.38807 -5.89490 0.02146 0.21773 1.18958 1.45488 1.51983 1.57347 1.97111 2.16986 2.44240 2.45930 2.97006 3.06386 3.26686 3.38837 4.06993 4.34262 4.37859 4.91495 5.03794 5.19530 5.29622 5.38497 5.53912 5.74196 6.00052 6.40174 6.51952 6.59139 7.05879 7.24221 7.45448 8.40325 Molecular weight = 237.07amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.008259 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.499513 B = 3389.618379 C = 4561.275048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.013 4.013 3 Si 1.012 2.988 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.317 4.317 8 H 0.128 0.872 9 N -0.506 5.506 10 C 0.201 3.799 11 C -0.303 4.303 12 C 0.172 3.828 13 F -0.122 7.122 14 C -0.103 4.103 15 N -0.228 5.228 16 N -0.402 5.402 17 C 0.469 3.531 18 N -0.804 5.804 19 N -0.603 5.603 20 C 0.243 3.757 21 H 0.288 0.712 22 H 0.404 0.596 23 H 0.149 0.851 24 H 0.180 0.820 25 H 0.424 0.576 26 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 -5.129 0.024 5.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.217 4.217 3 Si 0.833 3.167 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.447 4.447 8 H 0.145 0.855 9 N -0.101 5.101 10 C 0.070 3.930 11 C -0.339 4.339 12 C 0.148 3.852 13 F -0.101 7.101 14 C -0.233 4.233 15 N -0.002 5.002 16 N -0.248 5.248 17 C 0.099 3.901 18 N -0.363 5.363 19 N -0.343 5.343 20 C -0.016 4.016 21 H 0.098 0.902 22 H 0.239 0.761 23 H 0.167 0.833 24 H 0.197 0.803 25 H 0.257 0.743 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.109 -5.188 0.014 5.600 hybrid contribution -0.362 0.572 0.007 0.677 sum 1.747 -4.616 0.021 4.935 Atomic orbital electron populations 1.69824 1.07935 1.30979 1.44256 1.26562 0.96531 1.03906 0.94741 0.84681 0.77616 0.74376 0.80076 1.18237 1.20295 1.18246 1.20424 0.94596 0.82258 1.47455 0.85497 1.41054 1.08887 1.02203 1.57908 1.16459 0.90734 0.82272 1.03517 1.20059 0.90876 0.97809 1.25203 1.15907 0.76821 0.91946 1.00517 1.91475 1.27377 1.97233 1.93978 1.20189 0.79163 1.00101 1.23870 1.46201 1.05855 1.04346 1.43803 1.78374 0.95451 1.06603 1.44343 1.20672 0.88678 0.86852 0.93908 1.40782 1.00514 1.09072 1.85932 1.70386 1.14720 1.13560 1.35603 1.20915 0.87432 0.89240 1.03976 0.90182 0.76104 0.83297 0.80257 0.74344 0.74550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.75 13.05 21.63 0.28 -44.47 15 2 C -0.01 -0.60 5.50 84.84 0.47 -0.13 15 3 Si 1.01 35.93 29.55 68.60 2.03 37.96 15 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 15 5 H -0.28 -9.78 7.11 99.48 0.71 -9.07 15 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 7 C -0.32 -15.00 9.55 84.03 0.80 -14.19 15 8 H 0.13 5.51 5.71 -2.91 -0.02 5.49 15 9 N -0.51 -24.57 5.43 -183.48 -1.00 -25.57 15 10 C 0.20 9.15 6.67 38.78 0.26 9.41 15 11 C -0.30 -12.40 9.36 22.72 0.21 -12.18 15 12 C 0.17 6.33 7.25 22.10 0.16 6.49 15 13 F -0.12 -4.00 17.26 44.97 0.78 -3.22 15 14 C -0.10 -3.80 11.15 83.41 0.93 -2.87 15 15 N -0.23 -9.66 3.89 -192.14 -0.75 -10.41 15 16 N -0.40 -16.46 12.81 -59.26 -0.76 -17.22 15 17 C 0.47 18.41 9.38 261.09 2.45 20.86 15 18 N -0.80 -21.75 9.12 -59.23 -0.54 -22.29 15 19 N -0.60 -27.16 11.27 -195.16 -2.20 -29.36 15 20 C 0.24 11.11 7.75 134.36 1.04 12.16 15 21 H 0.29 13.40 8.31 -92.70 -0.77 12.63 15 22 H 0.40 20.86 7.91 -92.71 -0.73 20.12 15 23 H 0.15 5.80 6.00 -2.91 -0.02 5.78 15 24 H 0.18 5.55 8.06 -2.91 -0.02 5.53 15 25 H 0.42 8.81 8.96 -92.71 -0.83 7.98 15 26 H 0.42 9.77 8.96 -92.71 -0.83 8.94 15 Total: -1.00 -56.88 244.23 3.06 -53.81 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -1.10 Total: 41.23 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 6.32 Total: 19.54 kcal Atomic # 7 Polarization: -144.36 SS G_CDS: -4.96 Total: -149.32 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -56.88 3.06 -53.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186945.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.460 kcal (2) G-P(sol) polarization free energy of solvation -56.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds