Wall clock time and date at job start Sun Mar 29 2020 22:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47564 * 353.81519 * 3 2 1 5 5 C 1.38540 * 120.00248 * 180.02562 * 4 3 2 6 6 C 1.40040 * 120.44821 * 359.97438 * 5 4 3 7 7 C 1.38803 * 118.59497 * 180.02562 * 6 5 4 8 8 Cl 1.73596 * 120.34007 * 179.97438 * 7 6 5 9 9 N 1.32215 * 119.32192 * 0.02562 * 7 6 5 10 10 C 1.33413 * 120.86102 * 0.02562 * 9 7 6 11 11 C 1.41579 * 119.23859 * 180.27501 * 10 9 7 12 12 H 1.07993 * 120.00328 * 179.72220 * 11 10 9 13 13 C 1.40053 * 119.99634 * 359.72889 * 11 10 9 14 14 N 1.30699 * 120.00179 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99807 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47474 * 59.99577 * 15 13 11 17 17 H 1.48505 * 109.47179 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47181 * 299.99144 * 15 13 11 19 19 N 1.32565 * 120.45023 * 180.02562 * 5 4 3 20 20 H 4.40632 * 5.51450 * 180.02562 * 4 1 2 21 21 H 1.09005 * 109.47201 * 233.81523 * 3 2 1 22 22 H 1.08999 * 109.47486 * 113.82170 * 3 2 1 23 23 H 0.96996 * 120.00177 * 0.02562 * 4 3 2 24 24 H 1.07995 * 120.70564 * 0.02562 * 6 5 4 25 25 H 0.96997 * 119.99827 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3722 0.1488 5 6 4.4972 -1.6232 0.1766 6 6 5.4150 -0.5716 0.0627 7 6 6.7709 -0.8669 0.0948 8 17 7.9480 0.4015 -0.0433 9 7 7.1567 -2.1242 0.2305 10 6 6.2611 -3.1073 0.3360 11 6 6.7124 -4.4408 0.4859 12 1 5.9981 -5.2457 0.5769 13 6 8.0853 -4.7161 0.5164 14 7 8.9497 -3.7421 0.4060 15 14 8.6808 -6.4756 0.7136 16 1 8.1747 -7.2988 -0.4140 17 1 10.1656 -6.4984 0.7151 18 1 8.1756 -7.0285 1.9960 19 7 4.9495 -2.8621 0.3104 20 1 -1.0497 -0.0005 -0.0001 21 1 3.0091 0.6076 0.8295 22 1 3.0092 0.4159 -0.9401 23 1 2.5051 -2.1056 0.2279 24 1 5.0751 0.4475 -0.0478 25 1 9.9005 -3.9329 0.4267 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163363866.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:54 Heat of formation + Delta-G solvation = 79.105789 kcal Electronic energy + Delta-G solvation = -13593.799296 eV Core-core repulsion = 11020.248343 eV Total energy + Delta-G solvation = -2573.550952 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.93215 -37.75007 -37.31886 -35.48636 -34.08431 -32.91268 -31.21004 -28.36334 -27.52807 -24.02538 -23.31952 -19.93305 -19.49160 -18.17123 -17.69651 -16.63030 -15.97846 -15.92432 -15.67896 -15.30047 -14.96366 -14.59161 -14.05324 -13.19804 -13.11958 -12.89517 -12.75407 -12.02943 -11.96359 -11.95196 -11.63798 -11.20705 -10.91297 -10.89349 -10.12841 -9.44100 -8.88173 -8.43775 -6.80327 0.63266 1.11072 1.11567 1.42863 1.49823 1.56314 1.57755 1.85024 2.21979 2.73224 2.74815 3.38979 3.85611 4.21515 4.35719 4.57419 4.60404 4.64379 4.94587 5.00066 5.12120 5.31066 5.95965 6.15149 6.45435 6.58669 6.65805 6.71188 7.18729 8.18310 8.36401 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.024684 B = 0.007343 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.052570 B = 3812.171870 C = 4931.076707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.245 4.245 3 C 0.243 3.757 4 N -0.717 5.717 5 C 0.449 3.551 6 C -0.400 4.400 7 C 0.247 3.753 8 Cl -0.055 7.055 9 N -0.562 5.562 10 C 0.408 3.592 11 C -0.428 4.428 12 H 0.096 0.904 13 C 0.024 3.976 14 N -0.738 5.738 15 Si 1.001 2.999 16 H -0.257 1.257 17 H -0.264 1.264 18 H -0.257 1.257 19 N -0.666 5.666 20 H 0.258 0.742 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.403 0.597 24 H 0.144 0.856 25 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 4.885 -0.520 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.246 4.246 3 C 0.120 3.880 4 N -0.353 5.353 5 C 0.201 3.799 6 C -0.432 4.432 7 C 0.068 3.932 8 Cl -0.027 7.027 9 N -0.285 5.285 10 C 0.171 3.829 11 C -0.463 4.463 12 H 0.114 0.886 13 C -0.200 4.200 14 N -0.360 5.360 15 Si 0.820 3.180 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.181 1.181 19 N -0.397 5.397 20 H 0.274 0.726 21 H 0.108 0.892 22 H 0.108 0.892 23 H 0.238 0.762 24 H 0.162 0.838 25 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.295 4.306 -0.458 8.483 hybrid contribution -0.112 0.293 -0.032 0.315 sum -7.406 4.599 -0.490 8.732 Atomic orbital electron populations 1.25842 0.96609 0.95226 0.99002 1.23039 0.94551 1.04466 1.02522 1.18079 0.84054 0.82908 1.02942 1.44138 1.01581 1.08704 1.80904 1.18403 0.85656 0.89068 0.86724 1.21207 0.91089 1.00231 1.30699 1.21908 0.87519 0.90384 0.93382 1.98286 1.60590 1.47844 1.95949 1.68591 1.37899 0.97916 1.24115 1.19866 0.81691 0.93421 0.87895 1.19694 0.93341 0.90769 1.42476 0.88632 1.27092 0.95991 1.04402 0.92556 1.70219 1.03482 1.35321 1.26929 0.84982 0.77752 0.75077 0.80196 1.18120 1.18794 1.18116 1.68239 1.17641 1.20792 1.33078 0.72625 0.89242 0.89241 0.76156 0.83797 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 19.25 74.32 1.43 -1.27 15 2 C -0.25 -5.82 13.46 31.12 0.42 -5.40 15 3 C 0.24 6.56 5.40 84.57 0.46 7.02 15 4 N -0.72 -25.40 5.69 -353.64 -2.01 -27.41 15 5 C 0.45 20.55 7.71 133.39 1.03 21.58 15 6 C -0.40 -17.76 9.23 22.84 0.21 -17.55 15 7 C 0.25 12.33 7.33 84.77 0.62 12.95 15 8 Cl -0.05 -2.28 29.15 -2.72 -0.08 -2.36 15 9 N -0.56 -32.16 7.86 -185.03 -1.45 -33.61 15 10 C 0.41 23.63 7.37 135.16 1.00 24.63 15 11 C -0.43 -23.75 9.37 23.53 0.22 -23.53 15 12 H 0.10 5.07 7.85 -2.91 -0.02 5.04 15 13 C 0.02 1.22 5.50 85.30 0.47 1.69 15 14 N -0.74 -39.44 11.42 21.84 0.25 -39.19 15 15 Si 1.00 37.54 29.56 68.60 2.03 39.56 15 16 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 17 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 15 19 N -0.67 -35.66 10.39 -191.54 -1.99 -37.65 15 20 H 0.26 2.22 7.80 -4.43 -0.03 2.18 15 21 H 0.09 2.28 7.97 -2.38 -0.02 2.26 15 22 H 0.09 2.28 7.97 -2.39 -0.02 2.26 15 23 H 0.40 13.78 8.57 -92.71 -0.79 12.99 15 24 H 0.14 5.30 6.85 -2.91 -0.02 5.28 15 25 H 0.29 13.68 8.29 -92.71 -0.77 12.91 15 Total: -1.00 -66.43 255.30 3.03 -63.40 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.44 Total: 17.15 kcal Atomic # 6 Polarization: 14.27 SS G_CDS: 5.85 Total: 20.12 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -5.21 Total: -137.87 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.08 Total: -2.36 kcal Total: -66.43 3.03 -63.40 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163363866.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.504 kcal (2) G-P(sol) polarization free energy of solvation -66.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds