Wall clock time and date at job start Sun Mar 29 2020 21:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00155 * 2 1 4 4 C 1.53000 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47464 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00369 * 270.00077 * 5 4 3 7 7 C 1.38832 * 119.99806 * 89.99403 * 5 4 3 8 8 C 1.39958 * 119.97287 * 5.03121 * 7 5 4 9 9 N 1.32128 * 120.32211 * 180.02562 * 8 7 5 10 10 C 1.31932 * 120.26787 * 359.68012 * 9 8 7 11 11 C 1.40684 * 119.93496 * 0.54906 * 10 9 8 12 12 C 1.41268 * 120.15840 * 179.75922 * 11 10 9 13 13 H 1.08001 * 119.99922 * 5.92816 * 12 11 10 14 14 C 1.40054 * 120.00227 * 185.65735 * 12 11 10 15 15 N 1.30734 * 119.99754 * 353.98667 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 173.98077 * 14 12 11 17 17 H 1.48498 * 109.46832 * 60.00305 * 16 14 12 18 18 H 1.48503 * 109.46888 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47085 * 300.00052 * 16 14 12 20 20 N 1.32240 * 119.96709 * 185.00179 * 7 5 4 21 21 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46856 * 300.00070 * 1 2 3 23 23 H 1.08997 * 109.47105 * 59.99759 * 1 2 3 24 24 H 1.00906 * 111.00204 * 236.04942 * 2 1 3 25 25 H 1.09004 * 109.47268 * 60.00248 * 3 2 1 26 26 H 1.09003 * 109.47543 * 300.00220 * 3 2 1 27 27 H 1.08997 * 109.47193 * 60.00135 * 4 3 2 28 28 H 1.09004 * 109.47023 * 299.99920 * 4 3 2 29 29 H 1.08996 * 109.47065 * 270.00075 * 6 5 4 30 30 H 1.09007 * 109.46667 * 29.99326 * 6 5 4 31 31 H 1.08995 * 109.47347 * 149.99503 * 6 5 4 32 32 H 1.07996 * 119.84004 * 359.97438 * 8 7 5 33 33 H 1.07997 * 120.03573 * 180.30613 * 10 9 8 34 34 H 0.97002 * 120.00064 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0500 2.6982 0.0000 6 6 4.3120 3.3829 -1.2684 7 6 4.2992 3.3455 1.2026 8 6 4.1492 2.6566 2.4116 9 7 4.3840 3.2661 3.5602 10 6 4.7681 4.5281 3.5770 11 6 4.9177 5.2326 2.3685 12 6 5.3238 6.5856 2.3812 13 1 5.6126 7.0540 3.3105 14 6 5.3576 7.3179 1.1879 15 7 5.1275 6.7208 0.0478 16 14 5.7310 9.1478 1.2252 17 1 7.0746 9.3667 1.8185 18 1 5.7067 9.6863 -0.1586 19 1 4.7081 9.8451 2.0453 20 7 4.6785 4.6123 1.2047 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.8740 0.8074 -0.8908 28 1 3.8748 0.8071 0.8891 29 1 5.3364 3.1844 -1.5836 30 1 3.6209 3.0175 -2.0280 31 1 4.1737 4.4561 -1.1374 32 1 3.8393 1.6221 2.4058 33 1 4.9638 5.0212 4.5177 34 1 5.1512 7.2279 -0.7787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163720609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:20 Heat of formation + Delta-G solvation = 55.895380 kcal Electronic energy + Delta-G solvation = -16635.338335 eV Core-core repulsion = 13989.456591 eV Total energy + Delta-G solvation = -2645.881744 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01902 -36.92686 -35.06301 -33.90117 -31.65718 -29.78711 -28.98496 -26.51859 -25.10721 -24.03176 -22.20616 -21.88305 -20.11830 -17.54872 -16.44590 -15.83250 -15.53998 -15.04072 -14.84076 -14.57507 -13.94790 -13.52137 -13.29293 -13.05107 -12.60707 -12.39660 -11.79462 -11.66758 -11.55580 -11.33385 -11.24184 -11.12004 -10.70835 -10.61226 -10.37150 -9.74770 -9.47739 -9.31045 -8.48243 -8.26425 -7.34551 -6.57080 -6.43530 -4.63523 2.72455 3.03704 3.06135 3.12972 3.30853 3.72063 3.87943 4.50131 4.73026 5.15101 5.26750 5.39558 5.52021 5.69671 5.83016 5.85441 5.91945 5.95908 6.13353 6.26735 6.38105 6.45580 6.47555 6.73471 6.94716 6.95777 7.06271 7.20203 7.34224 7.65879 7.83352 8.14313 8.25931 8.58811 8.85828 9.45315 10.01894 10.19807 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.006517 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.328523 B = 4295.556442 C = 4765.655859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.692 5.692 3 C 0.039 3.961 4 C 0.138 3.862 5 N -0.616 5.616 6 C 0.106 3.894 7 C 0.371 3.629 8 C -0.165 4.165 9 N -0.407 5.407 10 C -0.109 4.109 11 C 0.245 3.755 12 C -0.417 4.417 13 H 0.089 0.911 14 C 0.070 3.930 15 N -0.712 5.712 16 Si 0.911 3.089 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.264 1.264 20 N -0.504 5.504 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.019 0.981 24 H 0.337 0.663 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.129 0.871 34 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 -5.570 -5.397 8.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.323 5.323 3 C -0.092 4.092 4 C 0.013 3.987 5 N -0.334 5.334 6 C -0.038 4.038 7 C 0.130 3.870 8 C -0.327 4.327 9 N -0.118 5.118 10 C -0.279 4.279 11 C 0.117 3.883 12 C -0.450 4.450 13 H 0.107 0.893 14 C -0.156 4.156 15 N -0.333 5.333 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.188 1.188 20 N -0.230 5.230 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.037 0.963 24 H 0.154 0.846 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.299 -5.692 -5.071 8.752 hybrid contribution -0.133 1.089 -1.092 1.547 sum -4.432 -4.604 -6.163 8.878 Atomic orbital electron populations 1.22164 0.87887 1.01482 1.00475 1.60330 1.07707 1.14686 1.49560 1.22538 0.96727 0.88737 1.01184 1.21122 0.91590 0.83532 1.02487 1.45880 1.70603 1.13447 1.03428 1.21436 0.97926 1.00606 0.83808 1.19495 0.90962 0.91271 0.85322 1.22042 1.22328 1.00396 0.87937 1.67537 1.05637 1.10141 1.28527 1.22910 1.14685 0.92254 0.98068 1.19099 0.88694 0.93686 0.86803 1.19569 1.36814 0.93787 0.94850 0.89289 1.26098 0.93669 1.00737 0.95105 1.70076 1.28207 1.36719 0.98341 0.86333 0.80104 0.81822 0.78278 1.18816 1.20251 1.18831 1.69028 1.21745 1.04522 1.27710 0.91598 0.91633 0.96289 0.84601 0.90434 0.95402 0.91848 0.89830 0.95009 0.94345 0.88511 0.85787 0.85337 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.70 60.06 0.64 0.97 16 2 N -0.69 -8.64 6.86 -121.13 -0.83 -9.47 16 3 C 0.04 0.58 6.01 -3.83 -0.02 0.56 16 4 C 0.14 2.20 5.52 -4.04 -0.02 2.18 16 5 N -0.62 -12.46 2.98 -181.55 -0.54 -13.00 16 6 C 0.11 2.00 10.50 59.85 0.63 2.62 16 7 C 0.37 9.16 7.37 -155.01 -1.14 8.02 16 8 C -0.17 -4.06 10.44 -16.78 -0.18 -4.24 16 9 N -0.41 -10.61 10.47 -12.11 -0.13 -10.74 16 10 C -0.11 -2.88 10.97 -16.59 -0.18 -3.06 16 11 C 0.25 6.76 6.54 -84.83 -0.55 6.20 16 12 C -0.42 -10.90 9.15 -37.75 -0.35 -11.25 16 13 H 0.09 2.15 7.86 -52.49 -0.41 1.73 16 14 C 0.07 1.72 5.49 -17.34 -0.10 1.62 16 15 N -0.71 -18.01 11.41 55.55 0.63 -17.38 16 16 Si 0.91 17.97 29.56 -169.99 -5.03 12.94 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 18 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 N -0.50 -13.72 6.80 -10.14 -0.07 -13.79 16 21 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 24 H 0.34 3.49 8.82 -39.29 -0.35 3.15 16 25 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.08 1.40 5.98 -51.93 -0.31 1.09 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.10 2.13 7.22 -51.93 -0.37 1.75 16 32 H 0.12 2.76 6.02 -52.49 -0.32 2.44 16 33 H 0.13 3.08 8.06 -52.49 -0.42 2.66 16 34 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -29.59 289.34 -7.56 -37.15 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -4.69 Total: 6.29 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.27 Total: 3.63 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -0.93 Total: -64.37 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.59 -7.56 -37.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163720609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.047 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds