Wall clock time and date at job start Sun Mar 29 2020 21:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 111.00155 * 2 1 4 4 C 1.53000 * 109.47260 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47464 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00369 * 270.00077 * 5 4 3 7 7 C 1.38832 * 119.99806 * 89.99403 * 5 4 3 8 8 C 1.39958 * 119.97287 * 5.03121 * 7 5 4 9 9 N 1.32128 * 120.32211 * 180.02562 * 8 7 5 10 10 C 1.31932 * 120.26787 * 359.68012 * 9 8 7 11 11 C 1.40684 * 119.93496 * 0.54906 * 10 9 8 12 12 C 1.41268 * 120.15840 * 179.75922 * 11 10 9 13 13 H 1.08001 * 119.99922 * 5.92816 * 12 11 10 14 14 C 1.40054 * 120.00227 * 185.65735 * 12 11 10 15 15 N 1.30734 * 119.99754 * 353.98667 * 14 12 11 16 16 Si 1.86801 * 120.00105 * 173.98077 * 14 12 11 17 17 H 1.48498 * 109.46832 * 60.00305 * 16 14 12 18 18 H 1.48503 * 109.46888 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47085 * 300.00052 * 16 14 12 20 20 N 1.32240 * 119.96709 * 185.00179 * 7 5 4 21 21 H 1.08999 * 109.47058 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46856 * 300.00070 * 1 2 3 23 23 H 1.08997 * 109.47105 * 59.99759 * 1 2 3 24 24 H 1.00906 * 111.00204 * 236.04942 * 2 1 3 25 25 H 1.09004 * 109.47268 * 60.00248 * 3 2 1 26 26 H 1.09003 * 109.47543 * 300.00220 * 3 2 1 27 27 H 1.08997 * 109.47193 * 60.00135 * 4 3 2 28 28 H 1.09004 * 109.47023 * 299.99920 * 4 3 2 29 29 H 1.08996 * 109.47065 * 270.00075 * 6 5 4 30 30 H 1.09007 * 109.46667 * 29.99326 * 6 5 4 31 31 H 1.08995 * 109.47347 * 149.99503 * 6 5 4 32 32 H 1.07996 * 119.84004 * 359.97438 * 8 7 5 33 33 H 1.07997 * 120.03573 * 180.30613 * 10 9 8 34 34 H 0.97002 * 120.00064 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3306 -0.0006 5 7 4.0500 2.6982 0.0000 6 6 4.3120 3.3829 -1.2684 7 6 4.2992 3.3455 1.2026 8 6 4.1492 2.6566 2.4116 9 7 4.3840 3.2661 3.5602 10 6 4.7681 4.5281 3.5770 11 6 4.9177 5.2326 2.3685 12 6 5.3238 6.5856 2.3812 13 1 5.6126 7.0540 3.3105 14 6 5.3576 7.3179 1.1879 15 7 5.1275 6.7208 0.0478 16 14 5.7310 9.1478 1.2252 17 1 7.0746 9.3667 1.8185 18 1 5.7067 9.6863 -0.1586 19 1 4.7081 9.8451 2.0453 20 7 4.6785 4.6123 1.2047 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8306 -0.5261 -0.7814 25 1 1.6460 1.8948 0.8900 26 1 1.6460 1.8948 -0.8900 27 1 3.8740 0.8074 -0.8908 28 1 3.8748 0.8071 0.8891 29 1 5.3364 3.1844 -1.5836 30 1 3.6209 3.0175 -2.0280 31 1 4.1737 4.4561 -1.1374 32 1 3.8393 1.6221 2.4058 33 1 4.9638 5.0212 4.5177 34 1 5.1512 7.2279 -0.7787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163720609.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:20 Heat of formation + Delta-G solvation = 35.443139 kcal Electronic energy + Delta-G solvation = -16636.225211 eV Core-core repulsion = 13989.456591 eV Total energy + Delta-G solvation = -2646.768620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88500 -38.34616 -36.38900 -35.79911 -33.53511 -31.55143 -30.40522 -28.24552 -26.72166 -25.36668 -23.85247 -23.47081 -21.79638 -19.42212 -18.12232 -17.33704 -17.06954 -16.75181 -16.51147 -16.00322 -15.35372 -15.02852 -14.76457 -14.44829 -14.15847 -13.88119 -13.36194 -13.20630 -12.97226 -12.81877 -12.73819 -12.59896 -12.41888 -12.03573 -11.96448 -11.64034 -11.31238 -11.22573 -10.15706 -9.46867 -9.27800 -8.33550 -8.30209 -6.61325 0.85109 1.27196 1.43437 1.55103 1.59199 2.22268 2.22686 2.84809 3.40845 3.89134 3.93172 4.13493 4.20939 4.32872 4.43780 4.51465 4.53805 4.59838 4.61877 4.80197 4.89773 4.96793 5.00400 5.04410 5.15021 5.23024 5.35543 5.74320 5.89757 6.04747 6.33395 6.46189 6.50776 6.69634 6.94585 7.48606 8.08329 8.36680 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.032652 B = 0.006517 C = 0.005874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.328523 B = 4295.556442 C = 4765.655859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.696 5.696 3 C 0.054 3.946 4 C 0.136 3.864 5 N -0.613 5.613 6 C 0.109 3.891 7 C 0.363 3.637 8 C -0.174 4.174 9 N -0.418 5.418 10 C -0.138 4.138 11 C 0.214 3.786 12 C -0.442 4.442 13 H 0.099 0.901 14 C 0.026 3.974 15 N -0.738 5.738 16 Si 0.992 3.008 17 H -0.257 1.257 18 H -0.267 1.267 19 H -0.260 1.260 20 N -0.529 5.529 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.026 0.974 24 H 0.353 0.647 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -5.768 -6.819 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.328 5.328 3 C -0.078 4.078 4 C 0.013 3.987 5 N -0.330 5.330 6 C -0.034 4.034 7 C 0.120 3.880 8 C -0.336 4.336 9 N -0.130 5.130 10 C -0.306 4.306 11 C 0.087 3.913 12 C -0.474 4.474 13 H 0.117 0.883 14 C -0.198 4.198 15 N -0.359 5.359 16 Si 0.812 3.188 17 H -0.181 1.181 18 H -0.192 1.192 19 H -0.185 1.185 20 N -0.257 5.257 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.044 0.956 24 H 0.172 0.828 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.566 -5.936 -6.508 9.921 hybrid contribution -0.098 1.026 -0.734 1.265 sum -4.664 -4.910 -7.242 9.915 Atomic orbital electron populations 1.22214 0.86772 1.02891 1.00179 1.60262 1.08803 1.13102 1.50640 1.22230 0.95828 0.90024 0.99678 1.21350 0.92182 0.81360 1.03835 1.46149 1.69715 1.14685 1.02435 1.21421 0.99205 0.98763 0.83997 1.19827 0.90195 0.90904 0.87108 1.22390 1.22155 1.01238 0.87816 1.67516 1.05824 1.10213 1.29400 1.23063 1.16419 0.92684 0.98430 1.19540 0.89558 0.94757 0.87477 1.19993 1.37238 0.93907 0.96256 0.88322 1.27032 0.92992 1.05619 0.94134 1.70158 1.27707 1.38902 0.99135 0.85110 0.79952 0.75074 0.78684 1.18140 1.19156 1.18465 1.69054 1.23130 1.05698 1.27783 0.89339 0.92962 0.95558 0.82794 0.93782 0.95128 0.88273 0.90577 0.94733 0.90407 0.91860 0.83785 0.84242 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.70 127.69 1.37 1.93 16 2 N -0.70 -15.72 6.86 -537.16 -3.68 -19.40 16 3 C 0.05 1.52 6.01 86.30 0.52 2.03 16 4 C 0.14 4.08 5.52 86.38 0.48 4.56 16 5 N -0.61 -24.27 2.98 -728.31 -2.17 -26.45 16 6 C 0.11 3.99 10.50 127.77 1.34 5.33 16 7 C 0.36 18.14 7.37 133.37 0.98 19.12 16 8 C -0.17 -8.62 10.44 85.07 0.89 -7.73 16 9 N -0.42 -22.26 10.47 -192.24 -2.01 -24.27 16 10 C -0.14 -7.46 10.97 85.28 0.94 -6.52 16 11 C 0.21 12.16 6.54 40.15 0.26 12.42 16 12 C -0.44 -23.50 9.15 23.46 0.21 -23.28 16 13 H 0.10 4.83 7.86 -2.91 -0.02 4.81 16 14 C 0.03 1.27 5.49 85.30 0.47 1.74 16 15 N -0.74 -37.59 11.41 21.84 0.25 -37.34 16 16 Si 0.99 36.37 29.56 68.60 2.03 38.40 16 17 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 19 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 20 N -0.53 -29.50 6.80 -186.00 -1.27 -30.77 16 21 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.35 6.15 8.82 -89.69 -0.79 5.36 16 25 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.10 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.08 2.42 5.98 -2.39 -0.01 2.41 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.08 2.20 8.07 -2.38 -0.02 2.18 16 31 H 0.06 2.78 7.22 -2.39 -0.02 2.77 16 32 H 0.14 6.39 6.02 -2.91 -0.02 6.37 16 33 H 0.14 6.93 8.06 -2.91 -0.02 6.91 16 34 H 0.28 12.89 8.29 -92.71 -0.77 12.12 16 Total: -1.00 -65.05 289.34 0.91 -64.14 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.31 Total: 26.09 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 7.46 Total: 9.61 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -8.89 Total: -138.23 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Total: -65.05 0.91 -64.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163720609.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.580 kcal (2) G-P(sol) polarization free energy of solvation -65.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds