Wall clock time and date at job start Sun Mar 29 2020 21:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47356 * 2 1 4 4 C 1.46503 * 120.00477 * 270.00451 * 3 2 1 5 5 C 1.50703 * 109.47248 * 270.00301 * 4 3 2 6 6 H 1.08004 * 119.99508 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00213 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47030 * 89.99547 * 9 7 5 11 11 H 1.48498 * 109.47676 * 210.00054 * 9 7 5 12 12 H 1.48504 * 109.47126 * 330.00238 * 9 7 5 13 13 C 1.38537 * 120.00280 * 89.99869 * 3 2 1 14 14 C 1.39666 * 120.52738 * 5.00762 * 13 3 2 15 15 C 1.38077 * 118.33529 * 179.97438 * 14 13 3 16 16 C 1.50697 * 120.40457 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47110 * 95.00003 * 16 15 14 18 18 N 1.32580 * 119.19916 * 0.27051 * 15 14 13 19 19 C 1.31764 * 121.01061 * 359.44285 * 18 15 14 20 20 N 1.31785 * 121.83242 * 0.57442 * 19 18 15 21 21 H 1.08996 * 109.47113 * 59.99567 * 1 2 3 22 22 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46913 * 299.99767 * 1 2 3 24 24 H 1.09004 * 109.46991 * 239.99944 * 2 1 3 25 25 H 1.08999 * 109.47557 * 120.00197 * 2 1 3 26 26 H 1.08999 * 109.46632 * 29.99521 * 4 3 2 27 27 H 1.08998 * 109.47615 * 149.99436 * 4 3 2 28 28 H 0.97001 * 119.99949 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.83765 * 359.97438 * 14 13 3 30 30 H 1.09002 * 109.47000 * 334.99999 * 16 15 14 31 31 H 1.08995 * 109.47308 * 215.00140 * 16 15 14 32 32 H 1.00901 * 110.99869 * 180.02562 * 17 16 15 33 33 H 1.00896 * 110.99543 * 303.95619 * 17 16 15 34 34 H 1.08001 * 119.08442 * 180.26604 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2307 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9133 2.0967 -3.4171 10 1 5.9772 0.8753 -4.2594 11 1 6.3920 3.2639 -4.2005 12 1 6.7735 1.9177 -2.2199 13 6 2.2493 2.0343 1.1997 14 6 2.1205 1.3552 2.4134 15 6 2.3619 2.0500 3.5819 16 6 2.2360 1.3634 4.9174 17 7 3.5558 0.8820 5.3469 18 7 2.7000 3.3303 3.5151 19 6 2.8185 3.9414 2.3538 20 7 2.5976 3.3174 1.2142 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.5817 1.6878 -2.0283 27 1 2.0955 3.1411 -1.1384 28 1 3.6748 3.5156 -4.4444 29 1 1.8393 0.3127 2.4374 30 1 1.5525 0.5189 4.8288 31 1 1.8492 2.0682 5.6534 32 1 3.4979 0.4170 6.2405 33 1 3.9641 0.2768 4.6505 34 1 3.0997 4.9840 2.3355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166591720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:36 Heat of formation + Delta-G solvation = 52.276695 kcal Electronic energy + Delta-G solvation = -16621.834844 eV Core-core repulsion = 13975.796182 eV Total energy + Delta-G solvation = -2646.038662 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34053 -36.91136 -35.09677 -32.85726 -32.21372 -30.83930 -29.92669 -26.97156 -25.44417 -23.99346 -22.85418 -22.17725 -19.94513 -17.07641 -16.96961 -16.32462 -15.68253 -15.09136 -14.90084 -14.56069 -14.31754 -14.05481 -13.64945 -13.21009 -12.85703 -12.76036 -12.14110 -11.93132 -11.77346 -11.23082 -11.00778 -10.73394 -10.63511 -10.46459 -10.17162 -9.86584 -9.53864 -9.21287 -8.78507 -8.47719 -8.38870 -7.11081 -6.05445 -4.11795 1.60731 2.04613 3.27737 3.34844 3.38923 3.66354 4.36013 4.41987 4.53860 4.76875 4.92121 5.14467 5.27168 5.33836 5.46976 5.48165 5.56595 5.62142 5.78149 5.96246 6.05743 6.12145 6.20309 6.44832 6.76783 6.98102 7.06515 7.33466 7.41673 7.60995 7.83247 8.11205 8.20185 8.24357 8.90083 9.02949 9.52871 11.00740 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.007114 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.776822 B = 3934.829805 C = 4351.786314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.573 5.573 4 C 0.250 3.750 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.451 3.549 14 C -0.308 4.308 15 C 0.193 3.807 16 C 0.117 3.883 17 N -0.839 5.839 18 N -0.568 5.568 19 C 0.332 3.668 20 N -0.558 5.558 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.263 0.737 29 H 0.129 0.871 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.343 0.657 33 H 0.342 0.658 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.601 -6.502 12.041 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.281 5.281 4 C 0.131 3.869 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.206 3.794 14 C -0.338 4.338 15 C 0.050 3.950 16 C -0.014 4.014 17 N -0.370 5.370 18 N -0.289 5.289 19 C 0.042 3.958 20 N -0.281 5.281 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -4.209 -4.817 11.597 13.245 hybrid contribution 0.379 -1.910 -0.584 2.033 sum -3.831 -6.727 11.013 13.462 Atomic orbital electron populations 1.22209 0.96658 1.01425 1.02416 1.21403 0.93488 0.83013 1.02691 1.47200 1.64107 1.12197 1.04565 1.19376 0.96094 0.93949 0.77478 1.21418 0.96854 1.31922 1.06240 0.92700 1.24902 0.97752 0.94906 0.96349 1.69929 1.35635 1.33397 1.14294 0.86524 0.84764 0.77699 0.78591 1.20689 1.21028 1.19977 1.18558 0.86187 0.88277 0.86394 1.21883 1.16881 1.02048 0.92987 1.20903 0.90211 0.90134 0.93784 1.20536 0.90409 0.97416 0.93023 1.58530 1.23239 1.47641 1.07595 1.68142 1.20615 1.10209 1.29915 1.24604 0.89550 0.99638 0.82029 1.68122 1.20147 1.08641 1.31235 0.92031 0.92077 0.92991 0.89681 0.91668 0.95237 0.93003 0.92707 0.85278 0.94097 0.89317 0.84402 0.84499 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 1.94 6.00 -4.04 -0.02 1.91 16 3 N -0.57 -12.09 2.56 -175.03 -0.45 -12.54 16 4 C 0.25 6.39 5.23 -5.19 -0.03 6.36 16 5 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 6 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.45 9.37 7.39 -154.79 -1.14 8.22 16 14 C -0.31 -5.27 8.99 -39.11 -0.35 -5.62 16 15 C 0.19 3.17 6.33 -82.33 -0.52 2.65 16 16 C 0.12 1.43 7.14 -4.97 -0.04 1.40 16 17 N -0.84 -9.54 9.61 -11.41 -0.11 -9.65 16 18 N -0.57 -10.33 10.37 -10.88 -0.11 -10.45 16 19 C 0.33 6.31 12.28 -92.19 -1.13 5.17 16 20 N -0.56 -12.30 9.23 -13.81 -0.13 -12.42 16 21 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 25 H 0.07 0.93 6.05 -51.93 -0.31 0.61 16 26 H 0.03 0.77 8.07 -51.93 -0.42 0.36 16 27 H 0.05 1.47 7.33 -51.93 -0.38 1.09 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.13 1.86 6.16 -52.49 -0.32 1.54 16 30 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.34 2.84 9.08 -39.29 -0.36 2.48 16 33 H 0.34 3.82 8.98 -39.29 -0.35 3.47 16 34 H 0.19 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -32.02 292.90 -8.59 -40.60 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -4.64 Total: 3.88 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -3.28 Total: 4.85 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -0.06 Total: -70.47 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.02 -8.59 -40.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.880 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds