Wall clock time and date at job start Sun Mar 29 2020 21:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47356 * 2 1 4 4 C 1.46503 * 120.00477 * 270.00451 * 3 2 1 5 5 C 1.50703 * 109.47248 * 270.00301 * 4 3 2 6 6 H 1.08004 * 119.99508 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00073 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00213 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00167 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47030 * 89.99547 * 9 7 5 11 11 H 1.48498 * 109.47676 * 210.00054 * 9 7 5 12 12 H 1.48504 * 109.47126 * 330.00238 * 9 7 5 13 13 C 1.38537 * 120.00280 * 89.99869 * 3 2 1 14 14 C 1.39666 * 120.52738 * 5.00762 * 13 3 2 15 15 C 1.38077 * 118.33529 * 179.97438 * 14 13 3 16 16 C 1.50697 * 120.40457 * 179.97438 * 15 14 13 17 17 N 1.46905 * 109.47110 * 95.00003 * 16 15 14 18 18 N 1.32580 * 119.19916 * 0.27051 * 15 14 13 19 19 C 1.31764 * 121.01061 * 359.44285 * 18 15 14 20 20 N 1.31785 * 121.83242 * 0.57442 * 19 18 15 21 21 H 1.08996 * 109.47113 * 59.99567 * 1 2 3 22 22 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46913 * 299.99767 * 1 2 3 24 24 H 1.09004 * 109.46991 * 239.99944 * 2 1 3 25 25 H 1.08999 * 109.47557 * 120.00197 * 2 1 3 26 26 H 1.08999 * 109.46632 * 29.99521 * 4 3 2 27 27 H 1.08998 * 109.47615 * 149.99436 * 4 3 2 28 28 H 0.97001 * 119.99949 * 179.97438 * 8 7 5 29 29 H 1.08000 * 120.83765 * 359.97438 * 14 13 3 30 30 H 1.09002 * 109.47000 * 334.99999 * 16 15 14 31 31 H 1.08995 * 109.47308 * 215.00140 * 16 15 14 32 32 H 1.00901 * 110.99869 * 180.02562 * 17 16 15 33 33 H 1.00896 * 110.99543 * 303.95619 * 17 16 15 34 34 H 1.08001 * 119.08442 * 180.26604 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7039 6 1 4.3428 1.2307 -1.0959 7 6 4.1490 2.3897 -2.8780 8 7 3.3487 3.1251 -3.6185 9 14 5.9133 2.0967 -3.4171 10 1 5.9772 0.8753 -4.2594 11 1 6.3920 3.2639 -4.2005 12 1 6.7735 1.9177 -2.2199 13 6 2.2493 2.0343 1.1997 14 6 2.1205 1.3552 2.4134 15 6 2.3619 2.0500 3.5819 16 6 2.2360 1.3634 4.9174 17 7 3.5558 0.8820 5.3469 18 7 2.7000 3.3303 3.5151 19 6 2.8185 3.9414 2.3538 20 7 2.5976 3.3174 1.2142 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.5817 1.6878 -2.0283 27 1 2.0955 3.1411 -1.1384 28 1 3.6748 3.5156 -4.4444 29 1 1.8393 0.3127 2.4374 30 1 1.5525 0.5189 4.8288 31 1 1.8492 2.0682 5.6534 32 1 3.4979 0.4170 6.2405 33 1 3.9641 0.2768 4.6505 34 1 3.0997 4.9840 2.3355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166591720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:35 Heat of formation + Delta-G solvation = 30.596331 kcal Electronic energy + Delta-G solvation = -16622.774975 eV Core-core repulsion = 13975.796182 eV Total energy + Delta-G solvation = -2646.978793 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.77728 -38.42174 -36.21011 -34.93995 -33.52387 -32.14915 -31.55922 -28.70706 -26.77786 -25.36428 -24.69864 -23.46732 -21.39761 -18.75176 -18.40499 -18.19836 -16.80436 -16.59845 -16.35568 -16.13854 -15.62211 -15.33496 -15.10696 -14.57075 -14.38336 -14.02359 -13.75035 -13.37669 -13.09918 -12.95983 -12.71801 -12.52874 -12.21961 -12.05245 -11.96838 -11.45013 -11.30232 -10.68266 -10.62416 -9.92814 -9.59910 -8.74912 -8.15197 -6.34932 0.23362 0.57990 1.35474 1.37872 1.47924 2.14612 2.39672 3.05181 3.08608 3.30916 3.51069 3.80519 3.92000 4.10225 4.25303 4.35136 4.39121 4.47484 4.68595 4.70951 4.82121 4.90463 4.96632 5.06619 5.21492 5.33383 5.55856 5.69079 5.97327 6.09645 6.16548 6.42349 6.61691 6.72266 6.78651 7.33967 7.56354 8.85489 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.007114 C = 0.006433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.776822 B = 3934.829805 C = 4351.786314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 N -0.586 5.586 4 C 0.271 3.729 5 C -0.536 4.536 6 H 0.046 0.954 7 C 0.013 3.987 8 N -0.926 5.926 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.276 1.276 13 C 0.425 3.575 14 C -0.297 4.297 15 C 0.190 3.810 16 C 0.122 3.878 17 N -0.850 5.850 18 N -0.572 5.572 19 C 0.322 3.678 20 N -0.605 5.605 21 H 0.039 0.961 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.362 0.638 33 H 0.344 0.656 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 -8.283 13.738 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.010 4.010 3 N -0.295 5.295 4 C 0.150 3.850 5 C -0.575 4.575 6 H 0.064 0.936 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.201 1.201 13 C 0.182 3.818 14 C -0.326 4.326 15 C 0.047 3.953 16 C -0.009 4.009 17 N -0.384 5.384 18 N -0.293 5.293 19 C 0.033 3.967 20 N -0.330 5.330 21 H 0.058 0.942 22 H 0.115 0.885 23 H 0.072 0.928 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.178 0.822 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.177 0.823 33 H 0.157 0.843 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.913 -6.628 13.347 15.407 hybrid contribution 0.258 -1.338 -1.007 1.695 sum -3.655 -7.966 12.340 15.136 Atomic orbital electron populations 1.22122 0.94695 1.03405 1.01389 1.21668 0.95048 0.80700 1.03541 1.47101 1.65441 1.13701 1.03252 1.18746 0.94692 0.92225 0.79385 1.21641 0.97824 1.31713 1.06315 0.93601 1.25742 1.01902 0.94578 0.96427 1.70042 1.37547 1.34231 1.14748 0.85497 0.79536 0.78137 0.78093 1.19155 1.20522 1.20140 1.18959 0.87045 0.88471 0.87347 1.22109 1.15733 1.03259 0.91488 1.21674 0.88426 0.89586 0.95622 1.20584 0.91521 0.98216 0.90531 1.58468 1.22833 1.48353 1.08717 1.68257 1.20498 1.11338 1.29232 1.25020 0.89393 1.00570 0.81749 1.68078 1.21770 1.10095 1.33020 0.94217 0.88477 0.92822 0.90712 0.88832 0.96851 0.96732 0.92460 0.82161 0.90984 0.88926 0.82270 0.84307 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 10.24 71.98 0.74 -3.40 16 2 C 0.11 3.57 6.00 86.38 0.52 4.09 16 3 N -0.59 -25.02 2.56 -707.66 -1.81 -26.83 16 4 C 0.27 14.42 5.23 85.63 0.45 14.87 16 5 C -0.54 -30.60 9.39 25.60 0.24 -30.36 16 6 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -55.43 13.29 21.44 0.28 -55.15 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.43 17.66 7.39 133.18 0.98 18.64 16 14 C -0.30 -9.54 8.99 22.58 0.20 -9.33 16 15 C 0.19 5.82 6.33 42.41 0.27 6.09 16 16 C 0.12 2.56 7.14 85.56 0.61 3.17 16 17 N -0.85 -16.56 9.61 -190.00 -1.83 -18.38 16 18 N -0.57 -20.16 10.37 -188.34 -1.95 -22.11 16 19 C 0.32 12.29 12.28 180.90 2.22 14.51 16 20 N -0.60 -27.28 9.23 -197.60 -1.82 -29.11 16 21 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.07 2.49 8.07 -2.38 -0.02 2.47 16 25 H 0.09 2.39 6.05 -2.39 -0.01 2.38 16 26 H 0.01 0.74 8.07 -2.39 -0.02 0.73 16 27 H 0.01 0.87 7.33 -2.39 -0.02 0.86 16 28 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.16 4.00 6.16 -2.91 -0.02 3.98 16 30 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.36 4.73 9.08 -89.69 -0.81 3.91 16 33 H 0.34 6.59 8.98 -89.70 -0.81 5.78 16 34 H 0.21 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -70.75 292.90 1.09 -69.66 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.50 Total: 15.53 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.69 Total: 19.46 kcal Atomic # 7 Polarization: -144.45 SS G_CDS: -7.13 Total: -151.58 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.75 1.09 -69.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166591720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.259 kcal (2) G-P(sol) polarization free energy of solvation -70.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds