Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36869 * 120.00306 * 2 1 4 4 H 1.07996 * 120.00250 * 180.53542 * 3 2 1 5 5 C 1.38851 * 119.99805 * 0.53239 * 3 2 1 6 6 N 1.31534 * 120.00157 * 344.12274 * 5 3 2 7 7 Si 1.86802 * 120.00008 * 164.12585 * 5 3 2 8 8 H 1.48496 * 109.47186 * 60.00003 * 7 5 3 9 9 H 1.48503 * 109.47094 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46782 * 299.99586 * 7 5 3 11 11 C 1.38327 * 119.99904 * 180.02562 * 2 1 3 12 12 N 1.32450 * 119.81618 * 89.28055 * 11 2 1 13 13 C 1.31800 * 121.79375 * 179.97438 * 12 11 2 14 14 C 1.38549 * 121.21217 * 0.02562 * 13 12 11 15 15 Cl 1.73601 * 120.25648 * 180.02562 * 14 13 12 16 16 C 1.38477 * 119.48597 * 359.97438 * 14 13 12 17 17 C 1.39968 * 118.35268 * 0.02562 * 16 14 13 18 18 C 1.43201 * 120.60731 * 180.02562 * 17 16 14 19 19 N 3.54831 * 97.21240 * 101.20248 * 2 1 3 20 20 H 1.08997 * 109.47179 * 185.35176 * 1 2 3 21 21 H 1.09001 * 109.46876 * 305.34632 * 1 2 3 22 22 H 1.08996 * 109.47530 * 65.34762 * 1 2 3 23 23 H 0.97000 * 120.00047 * 179.97438 * 6 5 3 24 24 H 1.08000 * 119.39558 * 180.27463 * 13 12 11 25 25 H 1.08001 * 120.82116 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.2294 1.1853 -0.0087 5 6 1.4552 2.3878 0.0112 6 7 0.1751 2.4110 -0.2901 7 14 2.3394 3.9726 0.4539 8 1 3.4469 4.2067 -0.5072 9 1 1.3827 5.1067 0.3933 10 1 2.8912 3.8641 1.8284 11 6 2.1566 -1.1980 -0.0005 12 7 2.4734 -1.7750 -1.1499 13 6 3.1319 -2.9158 -1.1959 14 6 3.5238 -3.5658 -0.0368 15 17 4.3908 -5.0672 -0.1263 16 6 3.2194 -3.0082 1.1936 17 6 2.5195 -1.7963 1.2193 18 6 2.1801 -1.1766 2.4648 19 7 1.9105 -0.6839 3.4532 20 1 -0.3633 -1.0232 0.0958 21 1 -0.3633 0.5945 0.8383 22 1 -0.3634 0.4286 -0.9339 23 1 -0.3099 3.2510 -0.2819 24 1 3.3741 -3.3498 -2.1547 25 1 3.5140 -3.4966 2.1107 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799816.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = 79.242198 kcal Electronic energy + Delta-G solvation = -14000.243733 eV Core-core repulsion = 11426.698696 eV Total energy + Delta-G solvation = -2573.545037 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.43968 -38.03763 -37.47606 -37.17736 -33.72396 -33.59639 -30.92548 -28.21011 -26.06374 -25.55107 -22.97793 -20.18582 -19.36451 -18.05596 -17.95792 -16.70715 -15.98214 -15.84119 -15.08748 -14.80337 -14.41915 -14.26098 -14.11708 -13.89360 -13.65247 -13.23660 -12.91439 -12.75012 -12.54448 -12.20919 -12.19767 -12.03539 -10.94353 -10.86526 -10.60818 -9.74353 -9.38379 -7.95405 -5.45342 -0.48160 -0.00494 0.95649 1.41341 1.45556 1.50887 1.68038 1.92595 2.34651 2.74875 2.85250 2.98004 3.16284 3.66529 3.78579 4.02717 4.20213 4.52701 4.67059 4.82697 5.17676 5.31666 5.48894 5.64658 6.12918 6.46476 6.87226 6.96365 7.66557 7.98167 9.04169 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.034847 B = 0.007234 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.315434 B = 3869.621739 C = 4069.368060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.573 5.573 3 C -0.274 4.274 4 H 0.077 0.923 5 C -0.034 4.034 6 N -0.927 5.927 7 Si 0.969 3.031 8 H -0.269 1.269 9 H -0.287 1.287 10 H -0.284 1.284 11 C 0.438 3.562 12 N -0.512 5.512 13 C 0.160 3.840 14 C -0.102 4.102 15 Cl -0.029 7.029 16 C 0.002 3.998 17 C -0.093 4.093 18 C 0.292 3.708 19 N -0.453 5.453 20 H 0.024 0.976 21 H 0.022 0.978 22 H 0.034 0.966 23 H 0.254 0.746 24 H 0.197 0.803 25 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 -14.664 -0.575 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.295 5.295 3 C -0.401 4.401 4 H 0.094 0.906 5 C -0.230 4.230 6 N -0.573 5.573 7 Si 0.796 3.204 8 H -0.194 1.194 9 H -0.212 1.212 10 H -0.211 1.211 11 C 0.208 3.792 12 N -0.224 5.224 13 C -0.001 4.001 14 C -0.132 4.132 15 Cl -0.001 7.001 16 C -0.027 4.027 17 C -0.103 4.103 18 C -0.023 4.023 19 N -0.129 5.129 20 H 0.042 0.958 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.214 0.786 25 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 6.618 -13.419 0.151 14.963 hybrid contribution 0.434 0.580 0.402 0.828 sum 7.051 -12.839 0.554 14.659 Atomic orbital electron populations 1.20804 0.79418 0.94798 1.00476 1.41554 1.03134 0.99524 1.85281 1.19258 0.90871 0.83091 1.46927 0.90553 1.25555 0.96787 1.00700 0.99979 1.70312 1.09214 1.26152 1.51597 0.85323 0.77841 0.78893 0.78341 1.19449 1.21246 1.21066 1.18550 0.87094 0.86581 0.86945 1.68279 1.13435 1.10638 1.30030 1.23457 0.89236 0.88282 0.99131 1.21776 1.03640 0.92825 0.94923 1.98385 1.74257 1.28886 1.98539 1.21665 0.91065 0.90550 0.99402 1.17595 1.07262 0.97702 0.87700 1.25230 0.92747 0.92412 0.91941 1.81141 1.09513 1.08537 1.13747 0.95764 0.95893 0.94747 0.93655 0.78604 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.46 8.96 127.77 1.14 10.61 15 2 N -0.57 -28.74 2.39 -540.41 -1.29 -30.04 15 3 C -0.27 -14.97 9.76 84.05 0.82 -14.14 15 4 H 0.08 4.10 7.88 -2.91 -0.02 4.08 15 5 C -0.03 -1.89 5.32 84.88 0.45 -1.44 15 6 N -0.93 -53.54 9.74 21.65 0.21 -53.32 15 7 Si 0.97 45.17 29.58 68.60 2.03 47.20 15 8 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 9 H -0.29 -13.26 7.11 99.48 0.71 -12.55 15 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 11 C 0.44 17.95 5.94 133.65 0.79 18.75 15 12 N -0.51 -18.73 10.38 -192.26 -2.00 -20.72 15 13 C 0.16 4.05 10.96 84.77 0.93 4.98 15 14 C -0.10 -2.22 6.34 22.40 0.14 -2.08 15 15 Cl -0.03 -0.49 28.98 -2.72 -0.08 -0.56 15 16 C 0.00 0.04 9.70 22.75 0.22 0.26 15 17 C -0.09 -3.17 5.77 -21.03 -0.12 -3.29 15 18 C 0.29 11.40 14.86 88.32 1.31 12.71 15 19 N -0.45 -19.38 18.54 19.01 0.35 -19.02 15 20 H 0.02 1.05 7.90 -2.39 -0.02 1.03 15 21 H 0.02 1.24 7.17 -2.39 -0.02 1.22 15 22 H 0.03 1.87 7.01 -2.39 -0.02 1.86 15 23 H 0.25 14.22 8.31 -92.71 -0.77 13.44 15 24 H 0.20 3.50 8.06 -2.91 -0.02 3.48 15 25 H 0.18 3.06 8.06 -2.91 -0.02 3.04 15 Total: -1.00 -64.51 252.92 6.14 -58.37 By element: Atomic # 1 Polarization: -9.47 SS G_CDS: 1.23 Total: -8.24 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 5.69 Total: 26.35 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -2.73 Total: -123.11 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.56 kcal Total: -64.51 6.14 -58.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799816.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.612 kcal (2) G-P(sol) polarization free energy of solvation -64.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds