Wall clock time and date at job start Sun Mar 29 2020 21:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46762 * 2 1 4 4 C 1.46502 * 119.99381 * 269.99828 * 3 2 1 5 5 C 1.38523 * 120.00323 * 89.99889 * 3 2 1 6 6 C 1.39726 * 120.49024 * 184.99733 * 5 3 2 7 7 C 1.38145 * 118.49013 * 179.70173 * 6 5 3 8 8 N 1.32466 * 119.29254 * 0.27752 * 7 6 5 9 9 C 1.32509 * 120.93481 * 359.97438 * 8 7 6 10 10 N 1.38436 * 119.17384 * 180.02562 * 9 8 7 11 11 C 1.46499 * 119.99399 * 180.02562 * 10 9 8 12 12 C 1.36984 * 120.00312 * 359.97438 * 10 9 8 13 13 H 1.07999 * 119.99527 * 22.49209 * 12 10 9 14 14 C 1.38832 * 120.00231 * 202.48974 * 12 10 9 15 15 N 1.31544 * 119.99548 * 11.08260 * 14 12 10 16 16 Si 1.86797 * 119.99828 * 191.08454 * 14 12 10 17 17 H 1.48504 * 109.47277 * 90.00282 * 16 14 12 18 18 H 1.48500 * 109.47179 * 209.99788 * 16 14 12 19 19 H 1.48493 * 109.47309 * 330.00061 * 16 14 12 20 20 N 1.32512 * 121.64578 * 0.02562 * 9 8 7 21 21 H 1.09000 * 109.47194 * 60.00649 * 1 2 3 22 22 H 1.09012 * 109.47303 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47736 * 300.00268 * 1 2 3 24 24 H 1.08995 * 109.47310 * 239.99362 * 2 1 3 25 25 H 1.09009 * 109.46968 * 119.99336 * 2 1 3 26 26 H 1.09006 * 109.46951 * 269.99802 * 4 3 2 27 27 H 1.08999 * 109.47578 * 30.00194 * 4 3 2 28 28 H 1.08997 * 109.46700 * 150.00750 * 4 3 2 29 29 H 1.08007 * 120.75614 * 359.97438 * 6 5 3 30 30 H 1.08001 * 120.35194 * 180.25478 * 7 6 5 31 31 H 1.08998 * 109.47349 * 93.90207 * 11 10 9 32 32 H 1.09007 * 109.46594 * 213.90006 * 11 10 9 33 33 H 1.09000 * 109.47523 * 333.89363 * 11 10 9 34 34 H 0.97006 * 119.99195 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 2.2491 2.0344 1.1996 6 6 2.6145 3.3829 1.2138 7 6 2.8286 3.9948 2.4336 8 7 2.6878 3.2896 3.5461 9 6 2.3452 2.0103 3.5028 10 7 2.2077 1.3081 4.6879 11 6 1.8301 -0.1072 4.6610 12 6 2.4257 1.9362 5.8856 13 1 2.3447 3.0110 5.9542 14 6 2.7507 1.1913 7.0111 15 7 3.0629 -0.0808 6.8902 16 14 2.7444 1.9954 8.6971 17 1 1.3956 1.8625 9.3040 18 1 3.7464 1.3289 9.5672 19 1 3.0863 3.4340 8.5607 20 7 2.1309 1.3864 2.3536 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0278 0.0005 23 1 -0.3635 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.2919 1.9005 -1.5834 27 1 1.5816 1.6876 -2.0285 28 1 2.0954 3.1410 -1.1385 29 1 2.7228 3.9355 0.2921 30 1 3.1081 5.0370 2.4798 31 1 2.7288 -0.7235 4.6830 32 1 1.2120 -0.3348 5.5296 33 1 1.2683 -0.3162 3.7506 34 1 3.2903 -0.6012 7.6766 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800750.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:25 Heat of formation + Delta-G solvation = 66.113217 kcal Electronic energy + Delta-G solvation = -16870.056576 eV Core-core repulsion = 14224.617911 eV Total energy + Delta-G solvation = -2645.438666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37376 -38.57944 -37.27277 -34.04236 -33.43612 -32.28170 -30.40110 -28.43744 -27.35258 -26.02900 -24.74201 -22.83352 -21.99113 -19.35562 -18.48469 -17.78755 -17.07921 -16.35407 -15.95476 -15.76352 -15.67659 -15.20709 -14.92002 -14.56196 -14.05907 -14.03363 -13.34748 -13.23734 -13.02348 -12.91000 -12.68896 -12.59572 -12.37933 -12.07669 -11.90446 -11.68778 -11.29607 -11.09988 -10.66533 -9.51935 -9.21232 -8.52081 -8.26370 -5.80246 0.75555 1.00007 1.42643 1.48918 1.56908 2.05415 2.30532 2.84431 2.96135 3.56674 3.88757 4.08486 4.30528 4.39711 4.43180 4.56515 4.62116 4.67465 4.79326 4.85090 4.91057 4.98806 5.02133 5.11898 5.13328 5.29654 5.35228 5.48176 5.69967 6.01165 6.10843 6.57293 6.64656 6.91323 7.31838 7.54408 8.16680 8.73421 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.037194 B = 0.006919 C = 0.006058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.634030 B = 4045.886427 C = 4620.591749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 N -0.611 5.611 4 C 0.095 3.905 5 C 0.454 3.546 6 C -0.391 4.391 7 C 0.196 3.804 8 N -0.639 5.639 9 C 0.528 3.472 10 N -0.433 5.433 11 C 0.161 3.839 12 C -0.310 4.310 13 H 0.093 0.907 14 C -0.020 4.020 15 N -0.909 5.909 16 Si 1.002 2.998 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.266 1.266 20 N -0.657 5.657 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.022 0.978 24 H 0.098 0.902 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.181 0.819 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 2.204 -14.052 14.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.001 4.001 3 N -0.326 5.326 4 C -0.047 4.047 5 C 0.208 3.792 6 C -0.424 4.424 7 C 0.030 3.970 8 N -0.368 5.368 9 C 0.173 3.827 10 N -0.130 5.130 11 C 0.017 3.983 12 C -0.439 4.439 13 H 0.111 0.889 14 C -0.220 4.220 15 N -0.547 5.547 16 Si 0.825 3.175 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.191 1.191 20 N -0.395 5.395 21 H 0.086 0.914 22 H 0.095 0.905 23 H 0.041 0.959 24 H 0.116 0.884 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.175 0.825 30 H 0.198 0.802 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.036 1.263 -12.943 13.354 hybrid contribution 0.228 0.462 0.288 0.590 sum -2.808 1.725 -12.656 13.078 Atomic orbital electron populations 1.22035 0.95910 1.02348 1.00938 1.21369 0.94357 0.81836 1.02577 1.46498 1.69744 1.14027 1.02354 1.21866 1.01672 0.98248 0.82896 1.18510 0.86153 0.88628 0.85883 1.21734 1.24613 0.95362 1.00735 1.23007 0.87849 0.99505 0.86678 1.67922 1.27862 1.07690 1.33340 1.19265 0.91210 0.86682 0.85534 1.42357 1.59977 1.09387 1.01317 1.21018 0.98412 0.80270 0.98596 1.19875 1.45757 0.93748 0.84508 0.88931 1.26301 0.95522 0.96515 1.03660 1.70219 1.44725 1.08468 1.31331 0.84785 0.78240 0.78251 0.76187 1.19429 1.20315 1.19078 1.67187 1.35223 1.39880 0.97174 0.91373 0.90473 0.95857 0.88379 0.92771 0.92466 0.88930 0.90405 0.82469 0.80221 0.94775 0.93261 0.93122 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.12 3.27 6.20 86.38 0.54 3.80 16 3 N -0.61 -17.99 2.98 -728.29 -2.17 -20.16 16 4 C 0.09 1.78 10.30 127.77 1.32 3.10 16 5 C 0.45 17.80 7.39 133.23 0.98 18.79 16 6 C -0.39 -13.80 9.33 22.61 0.21 -13.59 16 7 C 0.20 7.74 11.28 84.58 0.95 8.70 16 8 N -0.64 -32.42 9.22 -198.17 -1.83 -34.25 16 9 C 0.53 28.32 8.13 261.46 2.13 30.44 16 10 N -0.43 -24.72 3.11 -547.68 -1.70 -26.42 16 11 C 0.16 8.50 8.72 127.77 1.11 9.62 16 12 C -0.31 -18.04 9.29 84.03 0.78 -17.26 16 13 H 0.09 5.49 7.31 -2.91 -0.02 5.46 16 14 C -0.02 -1.08 5.13 84.88 0.44 -0.64 16 15 N -0.91 -51.42 10.58 21.65 0.23 -51.19 16 16 Si 1.00 43.65 29.57 68.60 2.03 45.68 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 20 N -0.66 -31.35 7.83 -195.46 -1.53 -32.88 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.10 1.94 8.07 -2.39 -0.02 1.92 16 25 H 0.05 1.84 7.33 -2.38 -0.02 1.82 16 26 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.09 1.23 8.07 -2.39 -0.02 1.21 16 28 H 0.08 1.37 6.04 -2.39 -0.01 1.35 16 29 H 0.16 4.15 6.15 -2.91 -0.02 4.13 16 30 H 0.18 5.44 8.06 -2.91 -0.02 5.42 16 31 H 0.03 1.89 7.43 -2.39 -0.02 1.88 16 32 H 0.05 2.64 7.17 -2.38 -0.02 2.62 16 33 H 0.05 2.48 7.21 -2.39 -0.02 2.46 16 34 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -70.42 284.35 5.31 -65.10 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 1.09 Total: 14.20 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: 9.20 Total: 39.92 kcal Atomic # 7 Polarization: -157.90 SS G_CDS: -7.00 Total: -164.91 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -70.42 5.31 -65.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800750.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.218 kcal (2) G-P(sol) polarization free energy of solvation -70.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds