Wall clock time and date at job start Sun Mar 29 2020 22:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36818 * 119.99673 * 2 1 4 4 H 1.08001 * 120.00030 * 203.08789 * 3 2 1 5 5 C 1.38877 * 120.00177 * 23.08683 * 3 2 1 6 6 N 1.31511 * 120.00140 * 13.01555 * 5 3 2 7 7 Si 1.86795 * 120.00059 * 193.01441 * 5 3 2 8 8 H 1.48505 * 109.47213 * 90.00100 * 7 5 3 9 9 H 1.48501 * 109.47370 * 210.00144 * 7 5 3 10 10 H 1.48500 * 109.47539 * 330.00008 * 7 5 3 11 11 C 1.38441 * 120.00200 * 179.97438 * 2 1 3 12 12 C 1.39442 * 120.95245 * 90.00002 * 11 2 1 13 13 C 1.38023 * 119.19268 * 180.30064 * 12 11 2 14 14 Cl 1.73604 * 119.39884 * 179.70361 * 13 12 11 15 15 N 1.32260 * 121.20376 * 359.42160 * 13 12 11 16 16 C 1.31665 * 122.11575 * 0.59605 * 15 13 12 17 17 C 1.39539 * 120.64713 * 359.70074 * 16 15 13 18 18 C 1.43204 * 120.62691 * 180.02562 * 17 16 15 19 19 N 3.58025 * 97.12671 * 102.49485 * 2 1 3 20 20 H 1.09005 * 109.47006 * 275.11444 * 1 2 3 21 21 H 1.08998 * 109.47060 * 35.12150 * 1 2 3 22 22 H 1.08999 * 109.46810 * 155.12253 * 1 2 3 23 23 H 0.97008 * 120.00506 * 180.02562 * 6 5 3 24 24 H 1.08005 * 120.40313 * 0.02570 * 12 11 2 25 25 H 1.08004 * 119.67610 * 179.67721 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1642 1.2224 -0.3668 5 6 1.5381 2.3395 0.4716 6 7 0.4134 2.2588 1.1484 7 14 2.3137 4.0070 0.1446 8 1 1.7939 4.5524 -1.1351 9 1 1.9754 4.9362 1.2525 10 1 3.7886 3.8583 0.0565 11 6 2.1573 -1.1989 0.0005 12 6 2.5159 -1.8205 -1.1950 13 6 3.2003 -3.0184 -1.1521 14 17 3.6426 -3.8008 -2.6374 15 7 3.5301 -3.5783 -0.0001 16 6 3.2165 -3.0348 1.1574 17 6 2.5197 -1.8270 1.2107 18 6 2.1794 -1.2360 2.4699 19 7 1.9092 -0.7686 3.4684 20 1 -0.3633 0.0916 1.0236 21 1 -0.3633 0.8405 -0.5912 22 1 -0.3633 -0.9323 -0.4323 23 1 -0.0136 3.0652 1.4776 24 1 2.2574 -1.3724 -2.1431 25 1 3.5011 -3.5288 2.0747 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800860.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:36 Heat of formation + Delta-G solvation = 67.908658 kcal Electronic energy + Delta-G solvation = -14042.879490 eV Core-core repulsion = 11468.842994 eV Total energy + Delta-G solvation = -2574.036496 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.39239 -38.18415 -37.48960 -37.29549 -34.08316 -32.35452 -31.67561 -28.12926 -26.15993 -25.35336 -23.00130 -20.01148 -19.28498 -18.08945 -17.97282 -16.61520 -15.84229 -15.60695 -15.40374 -15.00954 -14.73683 -14.40283 -14.18592 -13.88977 -13.21395 -13.00068 -12.97686 -12.61424 -12.55091 -12.30420 -12.21656 -12.12050 -10.86414 -10.82517 -10.53006 -9.97881 -9.21581 -8.01832 -5.59327 -0.53022 0.11656 0.72819 1.44268 1.45152 1.53413 1.77663 1.93657 2.37450 2.79900 2.97257 3.16156 3.17785 3.52168 3.89456 4.05068 4.44491 4.57675 4.73507 4.99218 5.15401 5.37171 5.53175 5.56781 6.16732 6.50524 6.66389 6.91363 7.62414 7.98055 9.00804 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.026629 B = 0.008419 C = 0.007170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.240319 B = 3325.036898 C = 3904.346669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.576 5.576 3 C -0.284 4.284 4 H 0.078 0.922 5 C -0.028 4.028 6 N -0.920 5.920 7 Si 0.970 3.030 8 H -0.275 1.275 9 H -0.298 1.298 10 H -0.268 1.268 11 C 0.293 3.707 12 C -0.168 4.168 13 C 0.204 3.796 14 Cl -0.015 7.015 15 N -0.497 5.497 16 C 0.193 3.807 17 C -0.119 4.119 18 C 0.289 3.711 19 N -0.457 5.457 20 H 0.010 0.990 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.253 0.747 24 H 0.159 0.841 25 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.731 -10.639 -6.399 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.295 5.295 3 C -0.411 4.411 4 H 0.096 0.904 5 C -0.226 4.226 6 N -0.562 5.562 7 Si 0.797 3.203 8 H -0.201 1.201 9 H -0.225 1.225 10 H -0.192 1.192 11 C 0.187 3.813 12 C -0.192 4.192 13 C 0.041 3.959 14 Cl 0.014 6.986 15 N -0.208 5.208 16 C 0.031 3.969 17 C -0.128 4.128 18 C -0.026 4.026 19 N -0.133 5.133 20 H 0.028 0.972 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.177 0.823 25 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 4.656 -10.587 -4.963 12.586 hybrid contribution -0.302 1.852 -0.350 1.909 sum 4.354 -8.735 -5.313 11.112 Atomic orbital electron populations 1.20726 0.80044 0.97499 0.98571 1.41416 1.02886 0.99656 1.85526 1.19335 0.99250 0.84774 1.37775 0.90411 1.25809 0.98016 1.02025 0.96768 1.70185 1.20225 1.28351 1.37464 0.85238 0.78612 0.79235 0.77184 1.20103 1.22468 1.19227 1.18121 0.87132 0.85738 0.90345 1.22497 1.01241 0.95105 1.00348 1.21800 0.94583 0.90480 0.89045 1.98403 1.91292 1.80742 1.28208 1.67187 1.21990 1.34451 0.97175 1.23046 0.89148 0.88516 0.96181 1.18407 1.07751 0.98714 0.87902 1.25259 0.92737 0.92425 0.92210 1.81070 1.09482 1.08289 1.14463 0.97200 0.94516 0.94148 0.93734 0.82340 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.98 8.96 127.77 1.14 9.12 15 2 N -0.58 -26.44 2.41 -533.61 -1.29 -27.72 15 3 C -0.28 -14.42 9.62 84.07 0.81 -13.61 15 4 H 0.08 3.86 7.86 -2.91 -0.02 3.84 15 5 C -0.03 -1.47 5.10 84.89 0.43 -1.04 15 6 N -0.92 -51.80 10.71 21.66 0.23 -51.56 15 7 Si 0.97 42.96 29.57 68.60 2.03 44.99 15 8 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 9 H -0.30 -13.59 7.11 99.48 0.71 -12.88 15 10 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 11 C 0.29 11.05 5.05 39.08 0.20 11.24 15 12 C -0.17 -5.21 9.81 22.51 0.22 -4.99 15 13 C 0.20 5.61 7.26 84.58 0.61 6.22 15 14 Cl -0.02 -0.35 29.09 -2.72 -0.08 -0.43 15 15 N -0.50 -13.53 10.31 -185.83 -1.92 -15.45 15 16 C 0.19 5.08 10.92 85.03 0.93 6.01 15 17 C -0.12 -4.11 5.78 -21.02 -0.12 -4.23 15 18 C 0.29 11.84 14.93 88.34 1.32 13.16 15 19 N -0.46 -20.94 18.53 18.99 0.35 -20.59 15 20 H 0.01 0.50 7.34 -2.38 -0.02 0.48 15 21 H 0.04 1.77 7.34 -2.39 -0.02 1.76 15 22 H 0.04 1.54 8.00 -2.39 -0.02 1.52 15 23 H 0.25 14.01 8.31 -92.70 -0.77 13.24 15 24 H 0.16 4.58 8.06 -2.91 -0.02 4.56 15 25 H 0.21 3.79 8.06 -2.91 -0.02 3.77 15 Total: -1.00 -60.43 254.35 6.10 -54.33 By element: Atomic # 1 Polarization: -6.68 SS G_CDS: 1.23 Total: -5.45 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 5.54 Total: 21.89 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -2.62 Total: -115.33 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -60.43 6.10 -54.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800860.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.235 kcal (2) G-P(sol) polarization free energy of solvation -60.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds