Wall clock time and date at job start Sun Mar 29 2020 22:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36830 * 119.99641 * 2 1 4 4 H 1.07995 * 119.99841 * 187.55154 * 3 2 1 5 5 C 1.38870 * 119.99888 * 7.83074 * 3 2 1 6 6 N 1.31525 * 120.00169 * 354.22342 * 5 3 2 7 7 Si 1.86802 * 120.00165 * 174.22694 * 5 3 2 8 8 H 1.48500 * 109.46938 * 94.99192 * 7 5 3 9 9 H 1.48490 * 109.47281 * 214.99442 * 7 5 3 10 10 H 1.48500 * 109.46786 * 334.99461 * 7 5 3 11 11 C 1.38465 * 120.00185 * 179.97438 * 2 1 3 12 12 N 1.32654 * 119.55145 * 274.33582 * 11 2 1 13 13 C 1.31568 * 121.79196 * 179.75364 * 12 11 2 14 14 C 1.39694 * 120.67616 * 0.52451 * 13 12 11 15 15 C 1.43197 * 120.48025 * 179.76890 * 14 13 12 16 16 N 6.67986 * 119.90548 * 178.59804 * 2 1 3 17 17 C 1.40350 * 119.04339 * 359.74337 * 14 13 12 18 18 C 1.38015 * 118.36318 * 0.02562 * 17 14 13 19 19 Cl 1.73602 * 120.39010 * 179.97438 * 18 17 14 20 20 H 1.08997 * 109.47613 * 56.49664 * 1 2 3 21 21 H 1.09005 * 109.46931 * 176.49059 * 1 2 3 22 22 H 1.08999 * 109.47479 * 296.48675 * 1 2 3 23 23 H 0.97004 * 119.99887 * 180.02562 * 6 5 3 24 24 H 1.08005 * 119.66629 * 180.26804 * 13 12 11 25 25 H 1.08003 * 120.82354 * 180.02562 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1850 0.0000 4 1 3.2220 1.1891 -0.1229 5 6 1.4644 2.3820 0.1639 6 7 0.1498 2.3873 0.2051 7 14 2.4103 3.9847 0.3256 8 1 2.5132 4.6352 -1.0053 9 1 1.6973 4.8877 1.2643 10 1 3.7726 3.7049 0.8465 11 6 2.1574 -1.1991 0.0005 12 7 2.4090 -1.8088 1.1515 13 6 3.0588 -2.9517 1.2029 14 6 3.5201 -3.5625 0.0343 15 6 4.2312 -4.8039 0.0956 16 7 4.7954 -5.7887 0.1417 17 6 3.2760 -2.9421 -1.2007 18 6 2.5865 -1.7466 -1.2091 19 17 2.2562 -0.9337 -2.7070 20 1 -0.3634 0.5672 -0.8569 21 1 -0.3633 -1.0258 -0.0629 22 1 -0.3634 0.4583 0.9198 23 1 -0.3285 3.2235 0.3192 24 1 3.2412 -3.4204 2.1587 25 1 3.6193 -3.3892 -2.1220 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800912.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:34 Heat of formation + Delta-G solvation = 97.143427 kcal Electronic energy + Delta-G solvation = -13922.946308 eV Core-core repulsion = 11350.177526 eV Total energy + Delta-G solvation = -2572.768781 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 237.036 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.88843 -36.72774 -35.94431 -35.60737 -32.28956 -31.66146 -29.55879 -26.32294 -24.72323 -23.31237 -21.65283 -18.84049 -17.67648 -16.59054 -16.21590 -14.78391 -14.50888 -14.29458 -13.61113 -13.38212 -13.21553 -12.85598 -12.57222 -12.26098 -12.14567 -11.49188 -11.39172 -10.91391 -10.74789 -10.52036 -10.34519 -10.17421 -9.40177 -9.28026 -8.83930 -8.32031 -7.48699 -6.03836 -3.43993 0.82660 1.43974 2.50452 2.88075 3.13800 3.24490 3.30742 3.33292 4.01058 4.10582 4.17638 4.58015 4.92192 4.99367 5.27168 5.56032 5.60331 5.98457 6.16768 6.43219 6.66191 7.35024 7.46356 7.58010 7.61975 8.01046 8.39067 8.83696 9.48189 9.80328 10.93302 Molecular weight = 237.04amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.007660 C = 0.007198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.074692 B = 3654.696522 C = 3888.966804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.168 3.832 2 N -0.532 5.532 3 C -0.245 4.245 4 H 0.083 0.917 5 C 0.013 3.987 6 N -0.894 5.894 7 Si 0.922 3.078 8 H -0.283 1.283 9 H -0.285 1.285 10 H -0.275 1.275 11 C 0.430 3.570 12 N -0.487 5.487 13 C 0.169 3.831 14 C -0.130 4.130 15 C 0.276 3.724 16 N -0.440 5.440 17 C -0.020 4.020 18 C -0.104 4.104 19 Cl -0.043 7.043 20 H 0.063 0.937 21 H -0.001 1.001 22 H 0.055 0.945 23 H 0.260 0.740 24 H 0.158 0.842 25 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.493 -6.039 -2.507 6.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.246 5.246 3 C -0.373 4.373 4 H 0.101 0.899 5 C -0.187 4.187 6 N -0.536 5.536 7 Si 0.750 3.250 8 H -0.210 1.210 9 H -0.211 1.211 10 H -0.200 1.200 11 C 0.198 3.802 12 N -0.199 5.199 13 C 0.003 3.997 14 C -0.138 4.138 15 C -0.039 4.039 16 N -0.116 5.116 17 C -0.048 4.048 18 C -0.139 4.139 19 Cl -0.014 7.014 20 H 0.082 0.918 21 H 0.018 0.982 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.175 0.825 25 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.789 -6.751 -1.787 7.520 hybrid contribution 0.517 0.899 -0.804 1.312 sum 3.306 -5.852 -2.591 7.204 Atomic orbital electron populations 1.21279 0.78509 0.94377 1.03280 1.41620 1.03440 0.98799 1.80726 1.19274 0.91730 0.82269 1.43978 0.89935 1.25007 0.95846 0.98541 0.99294 1.70195 1.05476 1.26260 1.51702 0.85961 0.79064 0.82049 0.77901 1.20953 1.21073 1.19999 1.18341 0.87218 0.88410 0.86274 1.68335 1.14078 1.08348 1.29173 1.22814 0.90848 0.89484 0.96532 1.16751 1.08462 0.93082 0.95520 1.25400 0.92682 0.92341 0.93479 1.81211 1.11053 1.11712 1.07629 1.21293 0.93682 0.92644 0.97214 1.22603 1.06348 0.95160 0.89758 1.98356 1.94090 1.78980 1.29992 0.91813 0.98200 0.92632 0.92946 0.82450 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 3.89 8.95 59.85 0.54 4.43 15 2 N -0.53 -12.52 2.40 -122.41 -0.29 -12.82 15 3 C -0.25 -6.20 9.76 -15.09 -0.15 -6.34 15 4 H 0.08 2.07 7.83 -52.49 -0.41 1.66 15 5 C 0.01 0.33 5.46 -17.45 -0.10 0.23 15 6 N -0.89 -23.39 9.46 55.49 0.52 -22.87 15 7 Si 0.92 20.30 29.56 -169.99 -5.02 15.27 15 8 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 11 C 0.43 8.83 5.91 -155.17 -0.92 7.91 15 12 N -0.49 -9.36 10.38 -12.08 -0.13 -9.49 15 13 C 0.17 2.52 10.91 -17.12 -0.19 2.34 15 14 C -0.13 -1.82 5.76 -106.63 -0.61 -2.43 15 15 C 0.28 3.84 15.37 -22.48 -0.35 3.49 15 16 N -0.44 -6.78 18.54 41.83 0.78 -6.01 15 17 C -0.02 -0.28 9.69 -38.87 -0.38 -0.66 15 18 C -0.10 -1.84 6.36 -39.18 -0.25 -2.09 15 19 Cl -0.04 -0.76 28.44 -51.86 -1.47 -2.23 15 20 H 0.06 1.56 7.14 -51.93 -0.37 1.19 15 21 H 0.00 -0.01 7.90 -51.93 -0.41 -0.42 15 22 H 0.06 1.39 6.95 -51.93 -0.36 1.03 15 23 H 0.26 6.57 8.31 -40.82 -0.34 6.23 15 24 H 0.16 1.85 8.06 -52.48 -0.42 1.43 15 25 H 0.14 1.66 8.06 -52.48 -0.42 1.23 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -26.68 252.52 -5.74 -32.42 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: -1.53 Total: -4.97 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.40 Total: 6.88 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.88 Total: -51.18 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.47 Total: -2.23 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.68 -5.74 -32.42 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800912.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.565 kcal (2) G-P(sol) polarization free energy of solvation -26.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds