Wall clock time and date at job start Sun Mar 29 2020 21:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33842 * 119.99751 * 2 1 4 4 C 1.46886 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.33837 * 119.99747 * 179.97438 * 4 3 2 6 6 N 1.39005 * 120.00028 * 179.97438 * 5 4 3 7 7 N 1.38995 * 120.00258 * 180.02562 * 2 1 3 8 8 C 1.46504 * 119.99937 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.40756 * 35.14581 * 8 7 2 10 10 C 1.52959 * 109.41270 * 154.99992 * 8 7 2 11 11 C 1.53231 * 109.40209 * 183.70788 * 10 8 7 12 12 C 1.51277 * 108.53819 * 305.37120 * 11 10 8 13 13 C 1.37866 * 120.85265 * 231.33087 * 12 11 10 14 14 N 1.31513 * 120.00214 * 359.97438 * 13 12 11 15 15 Si 1.86804 * 120.00133 * 180.02562 * 13 12 11 16 16 H 1.48502 * 109.46952 * 89.99595 * 15 13 12 17 17 H 1.48494 * 109.47177 * 209.99673 * 15 13 12 18 18 H 1.48501 * 109.46576 * 329.99854 * 15 13 12 19 19 C 1.51267 * 118.29584 * 51.34919 * 12 11 10 20 20 C 1.52959 * 109.41613 * 275.35785 * 8 7 2 21 21 H 1.08996 * 109.46944 * 89.99668 * 1 2 3 22 22 H 1.08996 * 109.47045 * 209.99680 * 1 2 3 23 23 H 1.09000 * 109.46847 * 329.99959 * 1 2 3 24 24 H 1.08005 * 119.99808 * 180.02562 * 3 2 1 25 25 H 1.07997 * 120.00343 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.00637 * 0.02562 * 5 4 3 27 27 H 0.97005 * 119.99733 * 0.02562 * 6 5 4 28 28 H 0.96995 * 120.00128 * 179.72844 * 6 5 4 29 29 H 0.96996 * 120.00445 * 179.97438 * 7 2 1 30 30 H 1.09000 * 109.48416 * 303.68870 * 10 8 7 31 31 H 1.09003 * 109.48207 * 63.71885 * 10 8 7 32 32 H 1.08991 * 109.62853 * 65.08903 * 11 10 8 33 33 H 1.09000 * 109.62443 * 185.47300 * 11 10 8 34 34 H 0.97001 * 120.00535 * 180.02562 * 14 13 12 35 35 H 1.09003 * 109.62359 * 68.36653 * 19 12 11 36 36 H 1.08997 * 109.62710 * 188.93967 * 19 12 11 37 37 H 1.09006 * 109.47998 * 296.27378 * 20 8 7 38 38 H 1.09004 * 109.48199 * 56.31210 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1762 1.1591 0.0000 4 6 1.4417 2.4312 0.0006 5 6 2.1109 3.5902 0.0011 6 7 1.4159 4.7941 0.0011 7 7 2.2020 -1.2037 -0.0005 8 6 1.4696 -2.4725 -0.0005 9 1 0.5602 -2.3657 -0.5920 10 6 2.3475 -3.5663 -0.6108 11 6 1.5491 -4.8715 -0.6958 12 6 1.0131 -5.1979 0.6807 13 6 1.2111 -6.4425 1.2396 14 7 1.8729 -7.3643 0.5747 15 14 0.5382 -6.8203 2.9408 16 1 -0.8368 -7.3678 2.8189 17 1 1.4114 -7.8190 3.6080 18 1 0.5050 -5.5741 3.7478 19 6 0.2540 -4.1239 1.4278 20 6 1.0992 -2.8458 1.4358 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.2562 1.1591 -0.0004 25 1 0.3617 2.4312 0.0006 26 1 3.1909 3.5903 0.0007 27 1 0.4459 4.7941 0.0011 28 1 1.9009 5.6341 0.0054 29 1 3.1720 -1.2037 -0.0009 30 1 2.6603 -3.2657 -1.6107 31 1 3.2269 -3.7180 0.0151 32 1 0.7196 -4.7486 -1.3920 33 1 2.1990 -5.6764 -1.0390 34 1 2.0119 -8.2401 0.9678 35 1 -0.6955 -3.9317 0.9281 36 1 0.0725 -4.4491 2.4522 37 1 2.0082 -3.0147 2.0134 38 1 0.5274 -2.0345 1.8864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:54 Heat of formation + Delta-G solvation = 9.022670 kcal Electronic energy + Delta-G solvation = -16566.397621 eV Core-core repulsion = 14022.023667 eV Total energy + Delta-G solvation = -2544.373954 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.20374 -36.28940 -35.07029 -32.58531 -30.91091 -29.74935 -28.63470 -27.36467 -25.13613 -22.00324 -21.40716 -20.33031 -19.38159 -18.59404 -16.71301 -16.30792 -15.81993 -14.94106 -14.48256 -14.27405 -13.61623 -13.19268 -12.75508 -12.52491 -12.39886 -12.32626 -12.10505 -11.65737 -11.51970 -11.23751 -11.02130 -10.88499 -10.82487 -10.59622 -10.15178 -10.07119 -9.85964 -9.45416 -8.94484 -8.68010 -8.48386 -8.09962 -6.11286 -6.08610 -4.01978 2.20839 3.26747 3.35309 3.35909 3.75782 4.05055 4.29201 4.37554 5.15859 5.21512 5.44159 5.69746 5.70665 5.88151 5.94645 6.06111 6.18803 6.21522 6.44233 6.51053 6.60718 6.69875 6.75833 6.82241 6.90184 6.97091 7.08114 7.15704 7.26988 7.41274 7.63769 7.70781 7.78544 7.81216 7.95933 8.09606 8.36645 8.42931 8.95727 9.53665 10.98640 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.004715 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.884129 B = 5937.536920 C = 6225.868608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.172 3.828 3 C -0.270 4.270 4 C -0.197 4.197 5 C 0.077 3.923 6 N -0.894 5.894 7 N -0.742 5.742 8 C 0.160 3.840 9 H 0.065 0.935 10 C -0.114 4.114 11 C 0.013 3.987 12 C -0.487 4.487 13 C 0.075 3.925 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.020 4.020 20 C -0.118 4.118 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.123 0.877 27 H 0.387 0.613 28 H 0.388 0.612 29 H 0.390 0.610 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.059 0.941 34 H 0.264 0.736 35 H 0.016 0.984 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 16.269 -0.557 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.066 3.934 3 C -0.299 4.299 4 C -0.225 4.225 5 C -0.044 4.044 6 N -0.434 5.434 7 N -0.368 5.368 8 C 0.055 3.945 9 H 0.083 0.917 10 C -0.152 4.152 11 C -0.025 4.025 12 C -0.506 4.506 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.190 1.190 19 C -0.058 4.058 20 C -0.157 4.157 21 H 0.086 0.914 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.140 0.860 27 H 0.214 0.786 28 H 0.213 0.787 29 H 0.224 0.776 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.023 0.977 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.001 15.807 -0.564 15.849 hybrid contribution 0.022 0.011 0.966 0.966 sum -0.978 15.818 0.402 15.853 Atomic orbital electron populations 1.20982 0.91567 1.03184 1.02389 1.19925 0.92902 0.86010 0.94545 1.20196 0.97130 0.90263 1.22303 1.20768 0.97584 0.91134 1.13057 1.21070 0.96065 0.85587 1.01674 1.42271 1.08390 1.05728 1.87033 1.45093 1.07803 1.03308 1.80617 1.20918 0.94885 0.81969 0.96678 0.91720 1.21889 0.98885 0.97037 0.97426 1.19337 0.95174 0.92346 0.95636 1.20048 1.33696 0.95681 1.01226 1.24850 0.94649 0.95730 0.97490 1.69835 1.40398 1.04642 1.38000 0.86682 0.78988 0.77854 0.84970 1.20406 1.21669 1.18950 1.19815 0.95267 0.93499 0.97267 1.22051 1.00100 0.97897 0.95690 0.91358 0.90965 0.90794 0.88641 0.88323 0.85986 0.78573 0.78657 0.77609 0.94726 0.92929 0.97725 0.92279 0.92601 0.96543 0.94709 0.92998 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.61 36.01 0.31 -1.45 16 2 C 0.17 2.70 6.80 -80.88 -0.55 2.15 16 3 C -0.27 -4.02 9.64 -37.63 -0.36 -4.38 16 4 C -0.20 -2.62 9.03 -37.63 -0.34 -2.96 16 5 C 0.08 0.88 11.02 -15.84 -0.17 0.70 16 6 N -0.89 -7.79 9.07 30.96 0.28 -7.51 16 7 N -0.74 -12.39 5.21 -50.10 -0.26 -12.66 16 8 C 0.16 3.04 2.03 -67.97 -0.14 2.90 16 9 H 0.06 1.25 6.93 -51.93 -0.36 0.89 16 10 C -0.11 -2.37 5.40 -26.63 -0.14 -2.52 16 11 C 0.01 0.32 5.96 -27.48 -0.16 0.15 16 12 C -0.49 -12.69 5.51 -98.92 -0.55 -13.23 16 13 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 14 N -0.89 -25.52 12.73 55.43 0.71 -24.82 16 15 Si 0.89 20.99 27.53 -169.99 -4.68 16.31 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.26 -6.06 6.10 56.52 0.34 -5.72 16 19 C -0.02 -0.47 5.59 -27.49 -0.15 -0.62 16 20 C -0.12 -2.41 5.26 -26.63 -0.14 -2.55 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.09 5.43 -51.93 -0.28 0.81 16 23 H 0.07 0.94 6.16 -51.93 -0.32 0.62 16 24 H 0.10 1.40 8.05 -52.48 -0.42 0.97 16 25 H 0.10 1.26 6.18 -52.49 -0.32 0.94 16 26 H 0.12 1.29 8.05 -52.49 -0.42 0.87 16 27 H 0.39 3.02 8.81 -40.82 -0.36 2.66 16 28 H 0.39 2.54 8.95 -40.82 -0.37 2.17 16 29 H 0.39 6.16 8.58 -40.82 -0.35 5.81 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 33 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.65 6.95 -51.93 -0.36 0.28 16 LS Contribution 298.13 15.07 4.49 4.49 Total: -1.00 -28.11 298.13 -7.86 -35.97 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.90 Total: 8.08 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -2.50 Total: -19.86 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.73 Total: -44.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.68 Total: 16.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.11 -7.86 -35.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.991 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds