Wall clock time and date at job start Sun Mar 29 2020 21:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33842 * 119.99751 * 2 1 4 4 C 1.46886 * 120.00121 * 0.02562 * 3 2 1 5 5 C 1.33837 * 119.99747 * 179.97438 * 4 3 2 6 6 N 1.39005 * 120.00028 * 179.97438 * 5 4 3 7 7 N 1.38995 * 120.00258 * 180.02562 * 2 1 3 8 8 C 1.46504 * 119.99937 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.40756 * 35.14581 * 8 7 2 10 10 C 1.52959 * 109.41270 * 154.99992 * 8 7 2 11 11 C 1.53231 * 109.40209 * 183.70788 * 10 8 7 12 12 C 1.51277 * 108.53819 * 305.37120 * 11 10 8 13 13 C 1.37866 * 120.85265 * 231.33087 * 12 11 10 14 14 N 1.31513 * 120.00214 * 359.97438 * 13 12 11 15 15 Si 1.86804 * 120.00133 * 180.02562 * 13 12 11 16 16 H 1.48502 * 109.46952 * 89.99595 * 15 13 12 17 17 H 1.48494 * 109.47177 * 209.99673 * 15 13 12 18 18 H 1.48501 * 109.46576 * 329.99854 * 15 13 12 19 19 C 1.51267 * 118.29584 * 51.34919 * 12 11 10 20 20 C 1.52959 * 109.41613 * 275.35785 * 8 7 2 21 21 H 1.08996 * 109.46944 * 89.99668 * 1 2 3 22 22 H 1.08996 * 109.47045 * 209.99680 * 1 2 3 23 23 H 1.09000 * 109.46847 * 329.99959 * 1 2 3 24 24 H 1.08005 * 119.99808 * 180.02562 * 3 2 1 25 25 H 1.07997 * 120.00343 * 359.97438 * 4 3 2 26 26 H 1.08000 * 120.00637 * 0.02562 * 5 4 3 27 27 H 0.97005 * 119.99733 * 0.02562 * 6 5 4 28 28 H 0.96995 * 120.00128 * 179.72844 * 6 5 4 29 29 H 0.96996 * 120.00445 * 179.97438 * 7 2 1 30 30 H 1.09000 * 109.48416 * 303.68870 * 10 8 7 31 31 H 1.09003 * 109.48207 * 63.71885 * 10 8 7 32 32 H 1.08991 * 109.62853 * 65.08903 * 11 10 8 33 33 H 1.09000 * 109.62443 * 185.47300 * 11 10 8 34 34 H 0.97001 * 120.00535 * 180.02562 * 14 13 12 35 35 H 1.09003 * 109.62359 * 68.36653 * 19 12 11 36 36 H 1.08997 * 109.62710 * 188.93967 * 19 12 11 37 37 H 1.09006 * 109.47998 * 296.27378 * 20 8 7 38 38 H 1.09004 * 109.48199 * 56.31210 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1762 1.1591 0.0000 4 6 1.4417 2.4312 0.0006 5 6 2.1109 3.5902 0.0011 6 7 1.4159 4.7941 0.0011 7 7 2.2020 -1.2037 -0.0005 8 6 1.4696 -2.4725 -0.0005 9 1 0.5602 -2.3657 -0.5920 10 6 2.3475 -3.5663 -0.6108 11 6 1.5491 -4.8715 -0.6958 12 6 1.0131 -5.1979 0.6807 13 6 1.2111 -6.4425 1.2396 14 7 1.8729 -7.3643 0.5747 15 14 0.5382 -6.8203 2.9408 16 1 -0.8368 -7.3678 2.8189 17 1 1.4114 -7.8190 3.6080 18 1 0.5050 -5.5741 3.7478 19 6 0.2540 -4.1239 1.4278 20 6 1.0992 -2.8458 1.4358 21 1 -0.3633 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 3.2562 1.1591 -0.0004 25 1 0.3617 2.4312 0.0006 26 1 3.1909 3.5903 0.0007 27 1 0.4459 4.7941 0.0011 28 1 1.9009 5.6341 0.0054 29 1 3.1720 -1.2037 -0.0009 30 1 2.6603 -3.2657 -1.6107 31 1 3.2269 -3.7180 0.0151 32 1 0.7196 -4.7486 -1.3920 33 1 2.1990 -5.6764 -1.0390 34 1 2.0119 -8.2401 0.9678 35 1 -0.6955 -3.9317 0.9281 36 1 0.0725 -4.4491 2.4522 37 1 2.0082 -3.0147 2.0134 38 1 0.5274 -2.0345 1.8864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167845082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:54 Heat of formation + Delta-G solvation = -8.323477 kcal Electronic energy + Delta-G solvation = -16567.149806 eV Core-core repulsion = 14022.023667 eV Total energy + Delta-G solvation = -2545.126140 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65167 -37.50693 -36.29524 -34.26986 -32.38628 -31.46328 -29.78143 -28.91414 -26.40039 -23.73757 -23.17087 -21.42468 -21.01809 -19.70892 -18.21441 -17.39649 -17.11530 -16.40752 -16.31200 -15.41659 -15.08491 -14.77801 -14.33902 -14.18241 -13.95111 -13.68954 -13.46311 -13.01510 -12.77161 -12.69148 -12.52941 -12.44740 -12.36716 -11.88072 -11.84476 -11.71792 -11.43337 -11.14509 -10.78817 -10.55425 -10.42542 -9.20578 -8.16007 -7.15495 -6.10108 1.16955 1.39306 1.41973 1.50010 2.41606 2.70471 2.80571 3.14272 3.47340 4.07510 4.18379 4.28671 4.46447 4.56083 4.62843 4.74546 4.83947 4.93744 5.01612 5.06061 5.10316 5.15234 5.19688 5.30367 5.33845 5.54290 5.60755 5.63552 5.73225 5.77521 5.81490 5.85871 6.22045 6.36247 6.79033 6.96410 6.97007 7.20284 7.28552 7.47919 8.94951 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.050723 B = 0.004715 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.884129 B = 5937.536920 C = 6225.868608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.140 3.860 3 C -0.252 4.252 4 C -0.237 4.237 5 C 0.103 3.897 6 N -0.883 5.883 7 N -0.744 5.744 8 C 0.176 3.824 9 H 0.064 0.936 10 C -0.103 4.103 11 C 0.009 3.991 12 C -0.497 4.497 13 C 0.019 3.981 14 N -0.934 5.934 15 Si 0.940 3.060 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.250 1.250 19 C -0.022 4.022 20 C -0.111 4.111 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.133 0.867 27 H 0.394 0.606 28 H 0.401 0.599 29 H 0.393 0.607 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.002 0.998 33 H 0.026 0.974 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.034 0.966 37 H 0.039 0.961 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.466 19.270 0.106 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.037 3.963 3 C -0.281 4.281 4 C -0.266 4.266 5 C -0.020 4.020 6 N -0.423 5.423 7 N -0.373 5.373 8 C 0.070 3.930 9 H 0.082 0.918 10 C -0.141 4.141 11 C -0.029 4.029 12 C -0.516 4.516 13 C -0.178 4.178 14 N -0.574 5.574 15 Si 0.766 3.234 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.175 1.175 19 C -0.060 4.060 20 C -0.150 4.150 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.151 0.849 27 H 0.222 0.778 28 H 0.229 0.771 29 H 0.227 0.773 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.020 0.980 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.503 18.896 0.102 18.956 hybrid contribution 0.222 -0.679 0.681 0.988 sum -1.281 18.217 0.784 18.279 Atomic orbital electron populations 1.20948 0.90722 1.03201 1.02690 1.20092 0.93629 0.85644 0.96980 1.20399 0.97252 0.90799 1.19611 1.20727 0.97878 0.91040 1.16942 1.21299 0.96756 0.85922 0.98004 1.42342 1.09035 1.05597 1.85296 1.44799 1.07755 1.02708 1.82029 1.20526 0.94493 0.82475 0.95462 0.91823 1.21684 0.98172 0.95880 0.98411 1.19296 0.94946 0.93383 0.95244 1.20670 1.32873 0.96309 1.01778 1.25628 0.95393 0.95908 1.00916 1.69976 1.42634 1.05075 1.39701 0.85816 0.78308 0.77974 0.81264 1.19923 1.22064 1.17451 1.19833 0.95631 0.93800 0.96760 1.21946 0.99247 0.97113 0.96696 0.90955 0.92160 0.89447 0.88707 0.88007 0.84910 0.77781 0.77093 0.77273 0.93183 0.93960 0.97954 0.95540 0.92888 0.95735 0.94767 0.94221 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 8.61 71.24 0.61 -2.53 16 2 C 0.14 4.16 6.80 40.42 0.27 4.43 16 3 C -0.25 -6.97 9.64 23.54 0.23 -6.74 16 4 C -0.24 -5.67 9.03 23.53 0.21 -5.45 16 5 C 0.10 2.01 11.02 82.55 0.91 2.92 16 6 N -0.88 -12.14 9.07 -55.95 -0.51 -12.65 16 7 N -0.74 -23.87 5.21 -312.42 -1.63 -25.50 16 8 C 0.18 6.51 2.03 44.96 0.09 6.60 16 9 H 0.06 2.39 6.93 -2.38 -0.02 2.37 16 10 C -0.10 -4.28 5.40 30.66 0.17 -4.12 16 11 C 0.01 0.47 5.96 30.11 0.18 0.65 16 12 C -0.50 -26.07 5.51 -16.17 -0.09 -26.16 16 13 C 0.02 1.07 5.46 84.65 0.46 1.53 16 14 N -0.93 -55.20 12.73 21.44 0.27 -54.93 16 15 Si 0.94 43.28 27.53 68.60 1.89 45.16 16 16 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 18 H -0.25 -10.82 6.10 99.48 0.61 -10.22 16 19 C -0.02 -1.00 5.59 30.10 0.17 -0.83 16 20 C -0.11 -4.37 5.26 30.66 0.16 -4.21 16 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 1.72 5.43 -2.39 -0.01 1.70 16 23 H 0.09 2.02 6.16 -2.39 -0.01 2.01 16 24 H 0.09 2.57 8.05 -2.91 -0.02 2.55 16 25 H 0.10 2.34 6.18 -2.91 -0.02 2.32 16 26 H 0.13 2.31 8.05 -2.91 -0.02 2.29 16 27 H 0.39 4.77 8.81 -92.70 -0.82 3.96 16 28 H 0.40 3.71 8.95 -92.71 -0.83 2.88 16 29 H 0.39 11.94 8.58 -92.71 -0.80 11.15 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.03 1.47 7.08 -2.39 -0.02 1.45 16 34 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.03 1.52 4.59 -2.39 -0.01 1.51 16 37 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 1.91 6.95 -2.38 -0.02 1.89 16 Total: -1.00 -60.17 298.13 1.94 -58.23 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -1.46 Total: 23.61 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.38 Total: -33.93 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -1.86 Total: -93.07 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.89 Total: 45.16 kcal Total: -60.17 1.94 -58.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.907 kcal (2) G-P(sol) polarization free energy of solvation -60.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds