Wall clock time and date at job start Sun Mar 29 2020 22:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30734 * 1 3 3 Si 1.86793 * 120.00202 * 2 1 4 4 H 1.48500 * 109.47128 * 274.97707 * 3 2 1 5 5 H 1.48497 * 109.47561 * 34.98400 * 3 2 1 6 6 H 1.48506 * 109.46962 * 154.98546 * 3 2 1 7 7 C 1.40116 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99904 * 186.15160 * 7 2 1 9 9 C 1.40824 * 120.00222 * 6.15236 * 7 2 1 10 10 N 1.33908 * 120.27621 * 353.23252 * 9 7 2 11 11 C 1.31713 * 119.89379 * 179.97438 * 10 9 7 12 12 C 1.38962 * 120.48001 * 0.02667 * 11 10 9 13 13 N 1.32244 * 120.56946 * 359.97319 * 12 11 10 14 14 C 1.32623 * 120.08172 * 0.02562 * 13 12 11 15 15 N 1.37939 * 120.23494 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00006 * 0.04744 * 15 14 13 17 17 C 1.53042 * 113.14948 * 255.37407 * 16 15 14 18 18 S 1.81438 * 89.88680 * 211.85327 * 17 16 15 19 19 C 1.53038 * 113.15193 * 154.99834 * 16 15 14 20 20 H 0.97006 * 119.99765 * 0.02562 * 1 2 3 21 21 H 1.08007 * 119.76103 * 179.97438 * 11 10 9 22 22 H 1.07999 * 119.71858 * 179.69569 * 12 11 10 23 23 H 0.97000 * 119.99899 * 180.02562 * 15 14 13 24 24 H 1.09002 * 112.49652 * 25.21132 * 16 15 14 25 25 H 1.08994 * 113.14833 * 327.10546 * 17 16 15 26 26 H 1.08991 * 113.14932 * 96.59724 * 17 16 15 27 27 H 1.09008 * 113.14763 * 263.40560 * 19 16 15 28 28 H 1.09001 * 113.14944 * 32.84334 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3837 2.1071 -1.3948 5 1 1.4956 2.6200 0.8027 6 1 3.5877 1.4119 0.5920 7 6 2.0078 -1.2135 0.0005 8 1 3.0832 -1.2162 0.1008 9 6 1.3097 -2.4296 -0.1296 10 7 -0.0292 -2.4440 -0.1183 11 6 -0.6745 -3.5856 -0.2411 12 6 0.0241 -4.7785 -0.3821 13 7 1.3464 -4.7860 -0.3957 14 6 2.0189 -3.6494 -0.2738 15 7 3.3982 -3.6535 -0.2870 16 6 4.1255 -4.9164 -0.4372 17 6 4.7452 -5.4131 0.8710 18 16 6.1110 -6.1577 -0.0628 19 6 5.5257 -4.7377 -1.0284 20 1 -0.4850 0.8401 -0.0004 21 1 -1.7545 -3.5948 -0.2313 22 1 -0.5174 -5.7081 -0.4770 23 1 3.8866 -2.8203 -0.1972 24 1 3.5378 -5.6778 -0.9500 25 1 5.0659 -4.6043 1.5275 26 1 4.1271 -6.1486 1.3858 27 1 5.5613 -4.9074 -2.1046 28 1 5.9965 -3.7983 -0.7387 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168360394.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:31 Heat of formation + Delta-G solvation = 55.203050 kcal Electronic energy + Delta-G solvation = -14364.740886 eV Core-core repulsion = 11928.030234 eV Total energy + Delta-G solvation = -2436.710652 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87392 -38.36170 -35.81457 -34.41272 -33.21405 -30.16217 -27.79666 -27.19567 -24.49862 -23.43841 -21.97683 -19.47633 -18.49023 -18.10739 -17.16937 -16.73473 -16.06803 -15.80245 -15.35984 -15.15664 -14.51867 -14.06421 -13.87900 -13.78660 -13.22369 -12.97827 -12.89460 -12.32681 -12.09272 -11.90447 -11.64652 -11.47492 -11.28032 -11.17509 -10.42563 -9.22966 -8.84382 -8.64839 -8.26054 -6.32859 0.74071 0.85481 0.90173 1.27093 1.46483 1.58099 1.60066 2.24458 2.69240 2.89649 3.50316 3.85818 3.95786 3.98723 4.22516 4.34680 4.37997 4.50840 4.55023 4.71817 4.88128 5.05352 5.14530 5.25165 5.82363 6.13506 6.27955 6.66845 6.79056 6.99508 7.60428 8.10806 8.44663 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.024597 B = 0.008032 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.081724 B = 3485.143583 C = 4495.478316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.443 4.443 8 H 0.104 0.896 9 C 0.162 3.838 10 N -0.488 5.488 11 C 0.011 3.989 12 C -0.084 4.084 13 N -0.507 5.507 14 C 0.256 3.744 15 N -0.696 5.696 16 C 0.168 3.832 17 C -0.089 4.089 18 S -0.313 6.313 19 C -0.077 4.077 20 H 0.279 0.721 21 H 0.144 0.856 22 H 0.153 0.847 23 H 0.412 0.588 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -2.165 -0.515 8.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.199 4.199 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.478 4.478 8 H 0.122 0.878 9 C 0.028 3.972 10 N -0.206 5.206 11 C -0.150 4.150 12 C -0.238 4.238 13 N -0.229 5.229 14 C 0.009 3.991 15 N -0.337 5.337 16 C 0.059 3.941 17 C -0.240 4.240 18 S -0.088 6.088 19 C -0.226 4.226 20 H 0.090 0.910 21 H 0.161 0.839 22 H 0.171 0.829 23 H 0.251 0.749 24 H 0.127 0.873 25 H 0.130 0.870 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.895 -3.361 -0.519 9.523 hybrid contribution -0.789 1.528 0.124 1.724 sum 8.107 -1.833 -0.395 8.321 Atomic orbital electron populations 1.70217 1.09178 1.29284 1.29244 1.26996 0.95604 1.04617 0.92700 0.85107 0.79428 0.75676 0.79049 1.19201 1.20076 1.16802 1.19713 0.95407 0.89678 1.42969 0.87769 1.19516 0.89589 0.92716 0.95416 1.69431 1.07563 1.25935 1.17715 1.23535 1.00836 0.90315 1.00352 1.22738 0.89633 0.98658 1.12750 1.67389 1.09521 1.27850 1.18097 1.19435 0.86574 0.90690 1.02414 1.43713 1.00575 1.08126 1.81267 1.22111 0.90920 0.88076 0.93033 1.25166 0.94661 1.01780 1.02387 1.88842 1.50308 1.39467 1.30204 1.24839 0.95330 0.98100 1.04356 0.91013 0.83915 0.82927 0.74905 0.87276 0.86986 0.89414 0.87191 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -39.14 11.51 21.86 0.25 -38.88 15 2 C 0.02 1.08 5.49 85.31 0.47 1.55 15 3 Si 0.99 34.85 29.57 68.60 2.03 36.88 15 4 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 5 H -0.28 -9.65 7.11 99.48 0.71 -8.94 15 6 H -0.25 -7.94 7.11 99.48 0.71 -7.24 15 7 C -0.44 -21.47 8.86 23.36 0.21 -21.26 15 8 H 0.10 4.36 6.17 -2.91 -0.02 4.34 15 9 C 0.16 8.40 6.56 40.35 0.26 8.66 15 10 N -0.49 -26.65 8.06 -188.05 -1.52 -28.17 15 11 C 0.01 0.55 11.21 84.88 0.95 1.50 15 12 C -0.08 -3.76 11.22 84.80 0.95 -2.81 15 13 N -0.51 -23.29 9.28 -190.83 -1.77 -25.06 15 14 C 0.26 11.77 7.51 134.03 1.01 12.78 15 15 N -0.70 -24.96 5.37 -355.11 -1.91 -26.86 15 16 C 0.17 5.03 3.91 45.02 0.18 5.21 15 17 C -0.09 -2.45 7.75 72.00 0.56 -1.89 15 18 S -0.31 -8.27 24.80 -56.49 -1.40 -9.67 15 19 C -0.08 -1.81 7.69 71.99 0.55 -1.25 15 20 H 0.28 13.12 8.29 -92.70 -0.77 12.35 15 21 H 0.14 6.04 8.06 -2.91 -0.02 6.01 15 22 H 0.15 5.76 8.06 -2.91 -0.02 5.73 15 23 H 0.41 13.48 6.72 -92.71 -0.62 12.86 15 24 H 0.11 3.71 7.43 -2.39 -0.02 3.69 15 25 H 0.11 2.85 8.14 -2.39 -0.02 2.83 15 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.11 2.35 8.14 -2.38 -0.02 2.33 15 28 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 Total: -1.00 -60.33 257.40 1.39 -58.93 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.57 Total: 30.35 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.14 Total: 2.48 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -4.94 Total: -118.98 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.40 Total: -9.67 kcal Total: -60.33 1.39 -58.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168360394.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.136 kcal (2) G-P(sol) polarization free energy of solvation -60.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds