Wall clock time and date at job start Sun Mar 29 2020 21:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38526 * 119.99756 * 2 1 4 4 C 1.39684 * 120.49062 * 0.28126 * 3 2 1 5 5 C 1.38085 * 118.49500 * 179.97438 * 4 3 2 6 6 N 1.32510 * 119.29089 * 0.02562 * 5 4 3 7 7 C 1.32472 * 120.93640 * 359.97438 * 6 5 4 8 8 N 1.38395 * 119.18148 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99857 * 0.02562 * 8 7 6 10 10 C 1.52998 * 109.47178 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46941 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00116 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99736 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99574 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00167 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47216 * 89.99713 * 16 14 12 18 18 H 1.48502 * 109.47114 * 209.99584 * 16 14 12 19 19 H 1.48501 * 109.47047 * 329.99864 * 16 14 12 20 20 N 1.32468 * 121.64137 * 359.74342 * 7 6 5 21 21 H 1.09001 * 109.47007 * 179.72367 * 1 2 3 22 22 H 1.09004 * 109.46963 * 299.72162 * 1 2 3 23 23 H 1.08994 * 109.47567 * 59.72314 * 1 2 3 24 24 H 0.97001 * 120.00384 * 180.28419 * 2 1 3 25 25 H 1.08003 * 120.75007 * 359.97438 * 4 3 2 26 26 H 1.08002 * 120.35292 * 179.97438 * 5 4 3 27 27 H 0.97002 * 120.00074 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.46707 * 299.99817 * 9 8 7 29 29 H 1.09004 * 109.46881 * 59.99883 * 9 8 7 30 30 H 1.09010 * 109.46804 * 299.99939 * 10 9 8 31 31 H 1.08996 * 109.47037 * 59.99545 * 10 9 8 32 32 H 1.08996 * 109.47074 * 299.99464 * 11 10 9 33 33 H 1.08990 * 109.47022 * 59.99944 * 11 10 9 34 34 H 0.97007 * 119.99532 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1576 1.1997 0.0000 4 6 1.4695 2.4153 0.0059 5 6 2.2011 3.5864 0.0062 6 7 3.5247 3.5239 0.0004 7 6 4.1514 2.3568 -0.0051 8 7 5.5351 2.3340 -0.0105 9 6 6.2885 3.5905 -0.0095 10 6 7.7879 3.2861 -0.0169 11 6 8.5746 4.5983 -0.0152 12 6 10.0516 4.2985 -0.0218 13 1 10.3947 3.2745 -0.0272 14 6 10.9647 5.3315 -0.0221 15 7 12.2535 5.0698 -0.0274 16 14 10.3712 7.1027 -0.0136 17 1 10.2197 7.5673 1.3888 18 1 11.3607 7.9597 -0.7148 19 1 9.0613 7.1892 -0.7079 20 7 3.4866 1.2111 -0.0001 21 1 -0.3633 -1.0277 -0.0050 22 1 -0.3633 0.5095 0.8925 23 1 -0.3634 0.5181 -0.8874 24 1 1.9500 -0.8400 -0.0042 25 1 0.3897 2.4386 0.0101 26 1 1.6998 4.5430 0.0103 27 1 6.0062 1.4860 -0.0150 28 1 6.0312 4.1690 -0.8967 29 1 6.0380 4.1635 0.8833 30 1 8.0455 2.7073 0.8702 31 1 8.0379 2.7132 -0.9098 32 1 8.3172 5.1774 -0.9020 33 1 8.3245 5.1707 0.8779 34 1 12.8960 5.7967 -0.0280 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:58 Heat of formation + Delta-G solvation = 26.838764 kcal Electronic energy + Delta-G solvation = -15624.219589 eV Core-core repulsion = 12977.077856 eV Total energy + Delta-G solvation = -2647.141734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70853 -38.16281 -36.85013 -35.34614 -34.04310 -33.19777 -30.87235 -28.64136 -27.33572 -24.80593 -24.68561 -22.63769 -22.02925 -19.25750 -18.95662 -18.68247 -16.78995 -16.63816 -16.41154 -16.05110 -15.84929 -15.75238 -15.15853 -14.75718 -14.71531 -14.42731 -13.79675 -13.71057 -13.00807 -12.76796 -12.69659 -12.13761 -11.88100 -11.74867 -11.67554 -11.57017 -11.32331 -11.26987 -10.74924 -9.99557 -9.46271 -8.78599 -8.28229 -6.32692 0.44626 0.62197 1.39221 1.40775 1.53461 1.81044 2.38581 2.45934 3.07493 3.13125 3.57295 3.92946 4.13398 4.22353 4.24940 4.45339 4.55591 4.57232 4.69582 4.79576 4.94394 4.94712 4.97563 5.05037 5.29008 5.46929 5.57840 5.63753 5.69461 6.21048 6.29353 6.35961 6.39453 6.75279 6.83724 7.32077 7.60025 8.88554 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.063902 B = 0.003827 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.067057 B = 7315.567193 C = 7722.581419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.715 5.715 3 C 0.452 3.548 4 C -0.347 4.347 5 C 0.202 3.798 6 N -0.631 5.631 7 C 0.584 3.416 8 N -0.698 5.698 9 C 0.155 3.845 10 C -0.103 4.103 11 C -0.007 4.007 12 C -0.533 4.533 13 H 0.033 0.967 14 C 0.002 3.998 15 N -0.953 5.953 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.244 1.244 20 N -0.654 5.654 21 H 0.104 0.896 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.408 0.592 25 H 0.167 0.833 26 H 0.194 0.806 27 H 0.413 0.587 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.306 -6.800 0.047 29.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.347 5.347 3 C 0.206 3.794 4 C -0.377 4.377 5 C 0.039 3.961 6 N -0.359 5.359 7 C 0.225 3.775 8 N -0.334 5.334 9 C 0.031 3.969 10 C -0.141 4.141 11 C -0.045 4.045 12 C -0.571 4.571 13 H 0.051 0.949 14 C -0.194 4.194 15 N -0.594 5.594 16 Si 0.775 3.225 17 H -0.191 1.191 18 H -0.211 1.211 19 H -0.167 1.167 20 N -0.389 5.389 21 H 0.122 0.878 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.244 0.756 25 H 0.185 0.815 26 H 0.211 0.789 27 H 0.251 0.749 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.041 0.959 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -27.316 -6.534 0.051 28.086 hybrid contribution 0.156 -0.179 0.014 0.238 sum -27.159 -6.713 0.065 27.977 Atomic orbital electron populations 1.21893 0.76228 1.04862 1.02317 1.44458 1.07398 1.04354 1.78535 1.18595 0.86856 0.88396 0.85584 1.22055 1.03090 0.91783 1.20801 1.23203 0.87452 0.99823 0.85595 1.68024 1.12614 1.27076 1.28196 1.19115 0.86990 0.84366 0.86981 1.44274 1.00410 1.10061 1.78677 1.21190 0.89699 0.84494 1.01557 1.21501 0.92120 0.98862 1.01611 1.19422 0.93228 0.94839 0.97051 1.21487 0.91694 0.93563 1.50400 0.94912 1.26046 0.94728 1.04590 0.94073 1.70077 1.02409 1.34155 1.52738 0.85629 0.79235 0.78363 0.79277 1.19102 1.21060 1.16702 1.67206 1.08959 1.30232 1.32490 0.87787 0.91643 0.91654 0.75640 0.81542 0.78891 0.74937 0.92183 0.92123 0.92371 0.92372 0.95736 0.95862 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 9.95 127.77 1.27 1.90 16 2 N -0.72 -11.11 5.87 -366.09 -2.15 -13.26 16 3 C 0.45 10.59 7.71 133.21 1.03 11.61 16 4 C -0.35 -6.80 9.39 22.58 0.21 -6.59 16 5 C 0.20 4.54 11.28 84.55 0.95 5.49 16 6 N -0.63 -19.39 9.58 -198.28 -1.90 -21.29 16 7 C 0.58 18.93 8.43 261.51 2.20 21.13 16 8 N -0.70 -22.40 5.70 -351.08 -2.00 -24.40 16 9 C 0.15 5.27 5.65 86.38 0.49 5.76 16 10 C -0.10 -4.01 5.27 30.59 0.16 -3.85 16 11 C -0.01 -0.35 4.04 29.85 0.12 -0.23 16 12 C -0.53 -31.20 9.66 25.60 0.25 -30.95 16 13 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 14 C 0.00 0.13 5.47 84.65 0.46 0.59 16 15 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 16 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.24 -10.60 6.54 99.48 0.65 -9.95 16 20 N -0.65 -19.52 10.49 -195.56 -2.05 -21.57 16 21 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 22 H 0.06 0.40 7.97 -2.38 -0.02 0.38 16 23 H 0.06 0.40 7.97 -2.39 -0.02 0.38 16 24 H 0.41 5.90 8.95 -92.71 -0.83 5.07 16 25 H 0.17 2.01 6.85 -2.91 -0.02 1.99 16 26 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 27 H 0.41 12.39 8.59 -92.71 -0.80 11.59 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 30 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 33 H 0.02 1.05 7.57 -2.39 -0.02 1.03 16 34 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -73.51 290.83 0.66 -72.84 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.57 Total: 16.57 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 7.15 Total: 4.86 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -7.80 Total: -140.94 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -73.51 0.66 -72.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.683 kcal (2) G-P(sol) polarization free energy of solvation -73.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds