Wall clock time and date at job start Sun Mar 29 2020 22:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00348 * 2 1 4 4 H 1.48493 * 109.47137 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46668 * 299.99690 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99534 * 3 2 1 7 7 C 1.38819 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99601 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99496 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.72896 * 328.40810 * 10 9 7 12 12 C 1.54347 * 110.82219 * 205.00451 * 10 9 7 13 13 C 1.51373 * 105.17039 * 215.43597 * 12 10 9 14 14 C 1.38508 * 130.38311 * 197.17315 * 13 12 10 15 15 C 1.38109 * 120.24396 * 180.02562 * 14 13 12 16 16 C 1.38234 * 119.94799 * 359.97438 * 15 14 13 17 17 C 1.38226 * 119.92028 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 119.90384 * 179.97438 * 17 16 15 19 19 C 1.38196 * 109.75709 * 17.41291 * 13 12 10 20 20 C 1.51366 * 109.76444 * 359.63261 * 19 13 12 21 21 H 0.97006 * 119.99823 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00136 * 0.02562 * 9 7 2 23 23 H 1.08997 * 110.30720 * 96.50879 * 12 10 9 24 24 H 1.08998 * 110.38170 * 334.40081 * 12 10 9 25 25 H 1.07999 * 119.87588 * 359.97438 * 14 13 12 26 26 H 1.07998 * 120.02280 * 180.02562 * 15 14 13 27 27 H 1.08000 * 120.03970 * 179.97438 * 16 15 14 28 28 H 1.09003 * 110.44156 * 224.13846 * 20 19 13 29 29 H 1.08998 * 110.10630 * 102.03069 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 3.0032 -3.5570 -0.5317 12 6 1.2004 -4.7860 -0.6083 13 6 1.5579 -6.0262 0.1826 14 6 1.3530 -7.3651 -0.1068 15 6 1.7696 -8.3398 0.7785 16 6 2.3942 -7.9795 1.9578 17 6 2.5999 -6.6440 2.2490 18 17 3.3837 -6.1919 3.7305 19 6 2.1774 -5.6645 1.3638 20 6 2.2868 -4.1569 1.4437 21 1 -0.4850 0.8401 -0.0004 22 1 0.3554 -2.3880 -0.0002 23 1 1.4492 -4.9236 -1.6605 24 1 0.1400 -4.5594 -0.4975 25 1 0.8647 -7.6478 -1.0277 26 1 1.6084 -9.3827 0.5490 27 1 2.7203 -8.7405 2.6513 28 1 3.2774 -3.8651 1.7925 29 1 1.5191 -3.7602 2.1080 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168674741.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:59 Heat of formation + Delta-G solvation = 21.654700 kcal Electronic energy + Delta-G solvation = -14043.579474 eV Core-core repulsion = 11571.077599 eV Total energy + Delta-G solvation = -2472.501875 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 237.062 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90466 -36.54046 -35.87446 -33.25152 -30.96673 -30.53999 -27.42734 -26.90005 -23.70657 -21.77317 -20.91288 -19.98700 -17.32812 -16.34423 -15.53381 -15.14273 -14.97832 -14.08100 -13.60639 -13.29432 -13.13563 -12.77393 -12.36569 -12.09984 -11.59628 -11.34114 -11.11892 -10.93367 -10.84283 -10.74540 -10.57644 -10.43419 -10.04305 -9.74780 -8.97832 -8.51092 -8.34495 -7.04090 -5.81531 -3.11313 1.29226 1.41159 2.32344 3.41608 3.47771 3.49740 3.73998 4.54022 4.67057 4.90808 4.99630 5.27759 5.42384 5.52850 5.55333 5.69409 5.76703 6.01610 6.03911 6.24149 6.30632 6.38138 6.43599 6.47197 6.65234 6.79249 6.92901 6.98983 7.68355 8.36572 9.48251 10.03243 10.38183 11.40885 Molecular weight = 237.06amu Principal moments of inertia in cm(-1) A = 0.034738 B = 0.006119 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.849524 B = 4575.148226 C = 5193.266656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.716 5.716 10 C 0.183 3.817 11 H 0.065 0.935 12 C -0.092 4.092 13 C -0.077 4.077 14 C -0.108 4.108 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.027 4.027 18 Cl -0.080 7.080 19 C -0.074 4.074 20 C -0.106 4.106 21 H 0.256 0.744 22 H 0.386 0.614 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -15.892 2.096 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.130 4.130 13 C -0.077 4.077 14 C -0.126 4.126 15 C -0.136 4.136 16 C -0.138 4.138 17 C -0.054 4.054 18 Cl -0.051 7.051 19 C -0.076 4.076 20 C -0.146 4.146 21 H 0.065 0.935 22 H 0.220 0.780 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.088 0.912 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.956 -15.659 2.208 16.302 hybrid contribution 0.180 0.819 0.303 0.891 sum 4.136 -14.841 2.511 15.610 Atomic orbital electron populations 1.69671 1.05148 1.25702 1.57387 1.24761 0.95519 0.97784 1.02661 0.86114 0.78860 0.84001 0.77202 1.20461 1.21817 1.21817 1.19316 0.91153 0.83953 1.43047 0.90904 1.42423 1.05763 0.99553 1.87794 1.20836 0.94751 0.85710 0.91530 0.91681 1.21480 1.01651 0.91101 0.98767 1.20723 0.97166 0.94438 0.95410 1.20736 1.00384 0.91623 0.99867 1.20886 0.99561 0.99298 0.93891 1.20864 1.01042 0.93731 0.98200 1.20593 1.01896 0.93678 0.89195 1.98348 1.79407 1.93174 1.34187 1.20766 0.96519 0.96903 0.93378 1.22106 1.02616 0.87346 1.02564 0.93460 0.77989 0.90723 0.89659 0.85877 0.85420 0.85370 0.91183 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 15 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 15 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 15 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 15 7 C -0.24 -6.64 9.96 -15.06 -0.15 -6.79 15 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 15 9 N -0.72 -17.54 5.18 -52.06 -0.27 -17.81 15 10 C 0.18 3.61 3.74 -66.53 -0.25 3.36 15 11 H 0.07 1.29 8.09 -51.93 -0.42 0.87 15 12 C -0.09 -1.52 6.48 -26.85 -0.17 -1.69 15 13 C -0.08 -1.17 6.14 -104.21 -0.64 -1.81 15 14 C -0.11 -1.37 10.04 -39.53 -0.40 -1.77 15 15 C -0.12 -1.35 10.04 -39.63 -0.40 -1.75 15 16 C -0.12 -1.49 9.82 -39.59 -0.39 -1.88 15 17 C -0.03 -0.40 6.32 -39.45 -0.25 -0.65 15 18 Cl -0.08 -1.14 28.71 -51.86 -1.49 -2.63 15 19 C -0.07 -1.22 6.05 -104.17 -0.63 -1.85 15 20 C -0.11 -1.96 6.19 -26.86 -0.17 -2.12 15 21 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 22 H 0.39 9.99 7.62 -40.82 -0.31 9.68 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.09 1.44 7.81 -51.93 -0.41 1.04 15 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 26 H 0.13 1.07 8.06 -52.49 -0.42 0.65 15 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 29 H 0.09 1.75 8.08 -51.93 -0.42 1.33 15 LS Contribution 266.32 15.07 4.01 4.01 Total: -1.00 -29.15 266.32 -8.80 -37.95 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.22 Total: 5.70 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -3.54 Total: -17.36 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.45 Total: -44.81 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.49 Total: -2.63 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.15 -8.80 -37.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168674741.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.608 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds