Wall clock time and date at job start Sun Mar 29 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47394 * 2 1 4 4 N 1.46897 * 109.47770 * 120.00140 * 2 1 3 5 5 C 1.53005 * 109.46931 * 240.00078 * 2 1 3 6 6 C 1.53001 * 109.47256 * 174.99840 * 5 2 1 7 7 N 1.46495 * 109.47290 * 179.97438 * 6 5 2 8 8 C 1.37935 * 120.00038 * 179.97438 * 7 6 5 9 9 N 1.32611 * 120.23957 * 0.02562 * 8 7 6 10 10 C 1.32239 * 120.09150 * 179.97438 * 9 8 7 11 11 C 1.38975 * 120.56806 * 359.97438 * 10 9 8 12 12 N 1.31718 * 120.47247 * 0.02562 * 11 10 9 13 13 C 1.33908 * 119.89621 * 0.02562 * 12 11 10 14 14 C 1.40816 * 120.27629 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00320 * 179.97438 * 14 13 12 16 16 C 1.40118 * 120.00062 * 359.97047 * 14 13 12 17 17 N 1.30729 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47212 * 120.00346 * 18 16 14 21 21 H 1.48497 * 109.47065 * 240.00123 * 18 16 14 22 22 H 1.08998 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46697 * 299.99628 * 1 2 3 24 24 H 1.08997 * 109.47739 * 59.99852 * 1 2 3 25 25 H 1.00904 * 110.99829 * 59.99270 * 4 2 1 26 26 H 1.00892 * 111.00422 * 183.95239 * 4 2 1 27 27 H 1.09001 * 109.46799 * 54.99686 * 5 2 1 28 28 H 1.09004 * 109.47134 * 294.99883 * 5 2 1 29 29 H 1.09004 * 109.47096 * 59.99724 * 6 5 2 30 30 H 1.09004 * 109.47084 * 300.00073 * 6 5 2 31 31 H 0.97005 * 119.99837 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.72156 * 179.97438 * 10 9 8 33 33 H 1.07998 * 119.76395 * 179.72244 * 11 10 9 34 34 H 0.97003 * 120.00359 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0531 -1.3044 -2.5097 8 6 5.4049 -1.3407 -2.7816 9 7 6.2667 -0.7519 -1.9635 10 6 7.5621 -0.7889 -2.2268 11 6 8.0349 -1.4425 -3.3584 12 7 7.1987 -2.0347 -4.1861 13 6 5.8831 -2.0080 -3.9382 14 6 4.9820 -2.6389 -4.8174 15 1 3.9218 -2.6149 -4.6130 16 6 5.4609 -3.2977 -5.9576 17 7 6.7443 -3.3271 -6.2049 18 14 4.2655 -4.1340 -7.1243 19 1 2.8790 -3.9569 -6.6232 20 1 4.3848 -3.5269 -8.4743 21 1 4.5826 -5.5826 -7.2033 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6962 -1.6479 1.2227 26 1 3.0262 -0.6501 1.2557 27 1 1.6052 -0.2617 -2.1370 28 1 1.7516 -1.7716 -1.2056 29 1 3.9994 -1.0728 -0.4261 30 1 3.8531 0.4370 -1.3575 31 1 3.4257 -1.7359 -3.1107 32 1 8.2586 -0.3071 -1.5567 33 1 9.0951 -1.4609 -3.5632 34 1 7.0759 -3.7835 -6.9940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170886994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:58 Heat of formation + Delta-G solvation = 34.845084 kcal Electronic energy + Delta-G solvation = -16340.070142 eV Core-core repulsion = 13693.275588 eV Total energy + Delta-G solvation = -2646.794554 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99606 -37.32548 -34.63570 -33.97784 -31.55281 -30.30749 -29.11680 -27.58791 -25.88282 -23.33548 -21.76152 -21.07595 -20.49495 -17.61711 -16.66323 -16.16019 -15.81789 -15.05900 -14.87132 -14.22448 -14.05850 -13.78694 -13.47764 -12.87688 -12.81651 -12.19653 -12.08127 -11.87287 -11.49265 -11.42865 -11.33117 -10.98720 -10.82175 -10.59894 -10.20522 -9.85083 -9.40288 -9.37132 -8.74029 -8.57210 -7.35540 -6.80549 -6.42623 -4.43815 2.64182 3.03349 3.05498 3.06393 3.24177 3.86774 4.21247 4.60526 4.72540 4.91313 5.07668 5.28055 5.46857 5.58825 5.74209 5.79940 5.85925 6.01046 6.05105 6.09726 6.16113 6.29090 6.37234 6.49409 6.75189 6.99248 7.06301 7.14344 7.43334 7.65368 7.96217 8.10778 8.38863 8.61273 8.86226 9.45627 9.99179 10.22935 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.006958 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.141035 B = 4023.395422 C = 5191.148147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.090 3.910 3 H 0.081 0.919 4 N -0.847 5.847 5 C -0.168 4.168 6 C 0.145 3.855 7 N -0.725 5.725 8 C 0.260 3.740 9 N -0.500 5.500 10 C -0.085 4.085 11 C 0.029 3.971 12 N -0.449 5.449 13 C 0.194 3.806 14 C -0.423 4.423 15 H 0.082 0.918 16 C 0.068 3.932 17 N -0.714 5.714 18 Si 0.907 3.093 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.273 1.273 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.337 0.663 26 H 0.345 0.655 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.402 0.598 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 2.003 5.269 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 H 0.099 0.901 4 N -0.376 5.376 5 C -0.208 4.208 6 C 0.019 3.981 7 N -0.367 5.367 8 C 0.013 3.987 9 N -0.222 5.222 10 C -0.239 4.239 11 C -0.134 4.134 12 N -0.167 5.167 13 C 0.059 3.941 14 C -0.458 4.458 15 H 0.100 0.900 16 C -0.157 4.157 17 N -0.336 5.336 18 Si 0.732 3.268 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.198 1.198 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.159 0.841 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.239 0.761 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.646 2.608 5.713 10.686 hybrid contribution -0.018 -1.148 -1.455 1.853 sum -8.664 1.460 4.258 9.764 Atomic orbital electron populations 1.21790 0.94616 1.01848 1.01829 1.21363 0.95220 0.98305 0.87316 0.90082 1.59013 1.16906 1.21159 1.40546 1.22670 0.96546 1.01464 1.00138 1.20900 0.91364 0.96837 0.88984 1.43657 1.03399 1.62530 1.27102 1.19312 0.85283 0.99810 0.94264 1.67297 1.03193 1.20972 1.30707 1.22273 0.91133 1.09615 1.00901 1.23156 0.99545 0.97453 0.93224 1.69489 1.01060 1.19016 1.27110 1.19057 0.90973 0.93428 0.90611 1.19256 0.93705 1.28175 1.04644 0.89989 1.26016 0.95553 0.95825 0.98349 1.70105 1.13486 1.27861 1.22117 0.86271 0.81153 0.79343 0.80083 1.18426 1.19777 1.19784 0.92899 0.92069 0.92275 0.85060 0.84118 0.91084 0.91683 0.93683 0.93329 0.76111 0.85982 0.85830 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.49 37.15 0.35 -1.03 16 2 C 0.09 1.01 3.41 -67.71 -0.23 0.78 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 N -0.85 -9.46 9.18 -4.67 -0.04 -9.50 16 5 C -0.17 -2.13 4.97 -26.73 -0.13 -2.26 16 6 C 0.14 2.41 5.46 -4.04 -0.02 2.38 16 7 N -0.73 -14.76 5.60 -59.89 -0.34 -15.10 16 8 C 0.26 6.45 7.51 -154.83 -1.16 5.29 16 9 N -0.50 -12.36 9.71 -11.67 -0.11 -12.47 16 10 C -0.09 -2.03 11.22 -17.10 -0.19 -2.22 16 11 C 0.03 0.73 11.21 -17.33 -0.19 0.53 16 12 N -0.45 -12.54 8.03 -10.79 -0.09 -12.62 16 13 C 0.19 5.25 6.56 -84.61 -0.56 4.69 16 14 C -0.42 -10.85 8.89 -37.90 -0.34 -11.19 16 15 H 0.08 1.90 6.12 -52.49 -0.32 1.57 16 16 C 0.07 1.69 5.50 -17.32 -0.10 1.59 16 17 N -0.71 -18.77 11.48 55.56 0.64 -18.13 16 18 Si 0.91 17.97 29.56 -169.99 -5.03 12.94 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.34 3.46 9.00 -39.29 -0.35 3.11 16 26 H 0.35 4.02 7.55 -39.30 -0.30 3.72 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.77 6.87 -51.93 -0.36 0.42 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.40 7.74 6.45 -40.82 -0.26 7.48 16 32 H 0.12 2.52 8.06 -52.49 -0.42 2.09 16 33 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 34 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -29.76 286.51 -7.75 -37.51 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -4.53 Total: 14.49 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.57 Total: -1.43 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: 0.06 Total: -67.82 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.76 -7.75 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170886994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.353 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds