Wall clock time and date at job start Sun Mar 29 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47394 * 2 1 4 4 N 1.46897 * 109.47770 * 120.00140 * 2 1 3 5 5 C 1.53005 * 109.46931 * 240.00078 * 2 1 3 6 6 C 1.53001 * 109.47256 * 174.99840 * 5 2 1 7 7 N 1.46495 * 109.47290 * 179.97438 * 6 5 2 8 8 C 1.37935 * 120.00038 * 179.97438 * 7 6 5 9 9 N 1.32611 * 120.23957 * 0.02562 * 8 7 6 10 10 C 1.32239 * 120.09150 * 179.97438 * 9 8 7 11 11 C 1.38975 * 120.56806 * 359.97438 * 10 9 8 12 12 N 1.31718 * 120.47247 * 0.02562 * 11 10 9 13 13 C 1.33908 * 119.89621 * 0.02562 * 12 11 10 14 14 C 1.40816 * 120.27629 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00320 * 179.97438 * 14 13 12 16 16 C 1.40118 * 120.00062 * 359.97047 * 14 13 12 17 17 N 1.30729 * 120.00035 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00103 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47212 * 120.00346 * 18 16 14 21 21 H 1.48497 * 109.47065 * 240.00123 * 18 16 14 22 22 H 1.08998 * 109.46971 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46697 * 299.99628 * 1 2 3 24 24 H 1.08997 * 109.47739 * 59.99852 * 1 2 3 25 25 H 1.00904 * 110.99829 * 59.99270 * 4 2 1 26 26 H 1.00892 * 111.00422 * 183.95239 * 4 2 1 27 27 H 1.09001 * 109.46799 * 54.99686 * 5 2 1 28 28 H 1.09004 * 109.47134 * 294.99883 * 5 2 1 29 29 H 1.09004 * 109.47096 * 59.99724 * 6 5 2 30 30 H 1.09004 * 109.47084 * 300.00073 * 6 5 2 31 31 H 0.97005 * 119.99837 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.72156 * 179.97438 * 10 9 8 33 33 H 1.07998 * 119.76395 * 179.72244 * 11 10 9 34 34 H 0.97003 * 120.00359 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0399 -0.7213 -1.2493 6 6 3.5647 -0.6133 -1.3138 7 7 4.0531 -1.3044 -2.5097 8 6 5.4049 -1.3407 -2.7816 9 7 6.2667 -0.7519 -1.9635 10 6 7.5621 -0.7889 -2.2268 11 6 8.0349 -1.4425 -3.3584 12 7 7.1987 -2.0347 -4.1861 13 6 5.8831 -2.0080 -3.9382 14 6 4.9820 -2.6389 -4.8174 15 1 3.9218 -2.6149 -4.6130 16 6 5.4609 -3.2977 -5.9576 17 7 6.7443 -3.3271 -6.2049 18 14 4.2655 -4.1340 -7.1243 19 1 2.8790 -3.9569 -6.6232 20 1 4.3848 -3.5269 -8.4743 21 1 4.5826 -5.5826 -7.2033 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6962 -1.6479 1.2227 26 1 3.0262 -0.6501 1.2557 27 1 1.6052 -0.2617 -2.1370 28 1 1.7516 -1.7716 -1.2056 29 1 3.9994 -1.0728 -0.4261 30 1 3.8531 0.4370 -1.3575 31 1 3.4257 -1.7359 -3.1107 32 1 8.2586 -0.3071 -1.5567 33 1 9.0951 -1.4609 -3.5632 34 1 7.0759 -3.7835 -6.9940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170886994.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:58 Heat of formation + Delta-G solvation = 13.535686 kcal Electronic energy + Delta-G solvation = -16340.994187 eV Core-core repulsion = 13693.275588 eV Total energy + Delta-G solvation = -2647.718599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.85756 -38.45267 -36.14336 -35.85039 -33.43690 -31.87350 -30.06299 -29.02995 -27.76502 -24.81520 -23.55609 -22.77140 -21.48608 -19.51161 -18.36949 -17.70213 -17.03037 -16.74235 -16.16568 -15.84197 -15.32625 -15.28622 -14.92882 -14.52417 -14.18415 -13.84441 -13.30195 -13.15549 -12.99910 -12.71825 -12.57234 -12.40472 -12.03708 -11.90644 -11.75845 -11.65247 -11.30411 -11.17624 -10.43336 -9.64983 -9.25717 -8.62192 -8.28348 -6.35522 0.78160 1.23592 1.42273 1.54006 1.57534 2.21324 2.66974 2.86523 3.70123 3.83910 3.89501 4.07407 4.17587 4.28144 4.31277 4.50360 4.53873 4.63463 4.68219 4.91593 4.96050 5.03598 5.10516 5.14728 5.21812 5.30386 5.35583 5.79677 6.10669 6.25374 6.28328 6.56188 6.67763 6.77323 6.98943 7.59873 8.07818 8.42071 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.006958 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.141035 B = 4023.395422 C = 5191.148147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H 0.076 0.924 4 N -0.849 5.849 5 C -0.154 4.154 6 C 0.148 3.852 7 N -0.717 5.717 8 C 0.254 3.746 9 N -0.512 5.512 10 C -0.085 4.085 11 C 0.007 3.993 12 N -0.487 5.487 13 C 0.157 3.843 14 C -0.445 4.445 15 H 0.100 0.900 16 C 0.021 3.979 17 N -0.756 5.756 18 Si 0.989 3.011 19 H -0.245 1.245 20 H -0.270 1.270 21 H -0.269 1.269 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.343 0.657 26 H 0.341 0.659 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.406 0.594 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 1.811 5.360 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.019 4.019 3 H 0.094 0.906 4 N -0.378 5.378 5 C -0.194 4.194 6 C 0.023 3.977 7 N -0.358 5.358 8 C 0.007 3.993 9 N -0.235 5.235 10 C -0.239 4.239 11 C -0.154 4.154 12 N -0.205 5.205 13 C 0.023 3.977 14 C -0.479 4.479 15 H 0.118 0.882 16 C -0.201 4.201 17 N -0.379 5.379 18 Si 0.809 3.191 19 H -0.168 1.168 20 H -0.195 1.195 21 H -0.194 1.194 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.156 0.844 26 H 0.154 0.846 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.244 0.756 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.623 2.434 5.843 12.366 hybrid contribution 0.631 -1.036 -1.400 1.853 sum -9.991 1.398 4.443 11.024 Atomic orbital electron populations 1.21752 0.93038 1.02407 1.02413 1.21363 0.96364 0.97743 0.86408 0.90594 1.59029 1.16650 1.21696 1.40451 1.22586 0.93279 1.02226 1.01296 1.21016 0.94060 0.95456 0.87185 1.43784 1.01898 1.62092 1.28074 1.19539 0.87015 0.99052 0.93724 1.67416 1.03607 1.21610 1.30877 1.22765 0.91503 1.08721 1.00866 1.23541 1.00418 0.97861 0.93601 1.69419 1.01987 1.20474 1.28653 1.19552 0.91351 0.94748 0.92081 1.19703 0.94487 1.28503 1.05199 0.88231 1.27028 0.97340 0.95990 0.99759 1.70219 1.15773 1.28831 1.23064 0.85047 0.79006 0.77811 0.77226 1.16826 1.19458 1.19442 0.92345 0.91862 0.91363 0.84372 0.84558 0.90474 0.91024 0.94117 0.94549 0.75596 0.82855 0.83754 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.49 71.98 0.68 -1.63 16 2 C 0.09 1.90 3.41 44.92 0.15 2.06 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 N -0.85 -17.53 9.18 -168.68 -1.55 -19.08 16 5 C -0.15 -3.58 4.97 30.60 0.15 -3.43 16 6 C 0.15 4.76 5.46 86.38 0.47 5.23 16 7 N -0.72 -28.74 5.60 -343.40 -1.92 -30.66 16 8 C 0.25 12.66 7.51 134.04 1.01 13.67 16 9 N -0.51 -25.26 9.71 -190.83 -1.85 -27.11 16 10 C -0.09 -4.03 11.22 84.81 0.95 -3.08 16 11 C 0.01 0.37 11.21 84.89 0.95 1.32 16 12 N -0.49 -27.78 8.03 -188.05 -1.51 -29.29 16 13 C 0.16 8.66 6.56 40.35 0.26 8.92 16 14 C -0.44 -22.82 8.89 23.36 0.21 -22.61 16 15 H 0.10 4.53 6.12 -2.91 -0.02 4.51 16 16 C 0.02 1.01 5.50 85.31 0.47 1.48 16 17 N -0.76 -40.37 11.48 21.86 0.25 -40.12 16 18 Si 0.99 36.23 29.56 68.60 2.03 38.26 16 19 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 20 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.34 6.39 9.00 -89.69 -0.81 5.58 16 26 H 0.34 7.55 7.55 -89.70 -0.68 6.87 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 1.36 6.87 -2.38 -0.02 1.34 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.41 15.22 6.45 -92.70 -0.60 14.62 16 32 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 33 H 0.15 6.36 8.06 -2.91 -0.02 6.34 16 34 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 Total: -1.00 -64.22 286.51 -0.19 -64.41 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.95 Total: 41.66 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 5.31 Total: 1.94 kcal Atomic # 7 Polarization: -139.68 SS G_CDS: -6.58 Total: -146.26 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -64.22 -0.19 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170886994.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.949 kcal (2) G-P(sol) polarization free energy of solvation -64.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds