Wall clock time and date at job start Sun Mar 29 2020 21:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47278 * 2 1 4 4 N 1.46903 * 109.46965 * 119.99986 * 2 1 3 5 5 C 1.53001 * 109.47128 * 240.00272 * 2 1 3 6 6 C 1.53006 * 109.46899 * 174.99979 * 5 2 1 7 7 N 1.46505 * 109.46870 * 179.97438 * 6 5 2 8 8 C 1.38792 * 119.99594 * 179.97438 * 7 6 5 9 9 C 1.40088 * 120.76420 * 359.72909 * 8 7 6 10 10 N 1.31653 * 119.13667 * 179.71399 * 9 8 7 11 11 C 1.33597 * 120.79906 * 0.56736 * 10 9 8 12 12 C 1.41144 * 119.17844 * 179.68082 * 11 10 9 13 13 H 1.07995 * 120.00357 * 173.64796 * 12 11 10 14 14 C 1.40040 * 119.99884 * 353.64684 * 12 11 10 15 15 N 1.30734 * 119.99928 * 6.34391 * 14 12 11 16 16 Si 1.86796 * 120.00068 * 186.33851 * 14 12 11 17 17 H 1.48501 * 109.47175 * 94.99082 * 16 14 12 18 18 H 1.48507 * 109.46917 * 214.98713 * 16 14 12 19 19 H 1.48498 * 109.47231 * 334.98512 * 16 14 12 20 20 N 1.33610 * 121.65256 * 359.70277 * 11 10 9 21 21 C 1.31661 * 120.79052 * 0.02562 * 20 11 10 22 22 H 1.08991 * 109.47206 * 300.00306 * 1 2 3 23 23 H 1.09006 * 109.46867 * 59.99572 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.00901 * 110.99617 * 176.04261 * 4 2 1 26 26 H 1.00900 * 111.00160 * 300.00143 * 4 2 1 27 27 H 1.08996 * 109.46888 * 294.99825 * 5 2 1 28 28 H 1.08999 * 109.47249 * 54.99900 * 5 2 1 29 29 H 1.08996 * 109.47225 * 299.99639 * 6 5 2 30 30 H 1.08996 * 109.46748 * 59.99886 * 6 5 2 31 31 H 0.97001 * 119.99496 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.42527 * 359.96765 * 9 8 7 33 33 H 0.97003 * 119.99781 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.42920 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0533 -1.3043 -2.5096 8 6 5.4135 -1.3407 -2.7831 9 6 6.3329 -0.7173 -1.9296 10 7 7.6164 -0.7766 -2.2168 11 6 8.0437 -1.4113 -3.3119 12 6 9.4269 -1.4481 -3.5904 13 1 9.7966 -2.0421 -4.4130 14 6 10.3200 -0.7142 -2.7999 15 7 9.8906 -0.0954 -1.7313 16 14 12.1248 -0.6194 -3.2722 17 1 12.3653 0.6139 -4.0636 18 1 12.9572 -0.5888 -2.0427 19 1 12.4867 -1.8080 -4.0855 20 7 7.1944 -2.0119 -4.1505 21 6 5.8979 -1.9965 -3.9223 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.0262 -0.7626 1.1909 26 1 1.6961 -0.2350 2.0386 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9994 -1.0727 -0.4260 31 1 3.4259 -1.7357 -3.1106 32 1 5.9935 -0.1983 -1.0454 33 1 10.5093 0.4127 -1.1835 34 1 5.2166 -2.4835 -4.6043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170891046.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:00 Heat of formation + Delta-G solvation = 40.320557 kcal Electronic energy + Delta-G solvation = -16004.314333 eV Core-core repulsion = 13357.757214 eV Total energy + Delta-G solvation = -2646.557119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98128 -37.39255 -35.01698 -33.32937 -31.68309 -30.44870 -29.24683 -27.98478 -25.20568 -23.63671 -22.29030 -20.89743 -20.33435 -17.76977 -16.42277 -16.23857 -15.98166 -15.25145 -15.07737 -14.30097 -14.11118 -13.86687 -13.55737 -12.89611 -12.62431 -12.34317 -12.08621 -11.88414 -11.39632 -11.33464 -11.16772 -11.13073 -10.99493 -10.53571 -10.16091 -9.73820 -9.34537 -9.14188 -8.88615 -8.81680 -7.23451 -6.73924 -6.38950 -4.33930 2.76975 2.93955 3.14546 3.19879 3.22186 4.01779 4.17648 4.36653 4.79024 4.80665 4.91337 5.16922 5.35432 5.48462 5.59720 5.66842 5.79201 5.83649 5.96541 5.99362 6.02475 6.18616 6.22174 6.31440 6.51179 7.01955 7.12726 7.19361 7.30395 7.41730 8.18136 8.31539 8.54891 8.60779 8.77961 9.24745 10.26836 10.42738 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.048798 B = 0.004635 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.651896 B = 6040.171704 C = 6514.205839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.036 0.964 4 N -0.849 5.849 5 C -0.124 4.124 6 C 0.137 3.863 7 N -0.751 5.751 8 C -0.039 4.039 9 C 0.100 3.900 10 N -0.476 5.476 11 C 0.369 3.631 12 C -0.416 4.416 13 H 0.089 0.911 14 C 0.069 3.931 15 N -0.727 5.727 16 Si 0.914 3.086 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.261 1.261 20 N -0.566 5.566 21 C 0.101 3.899 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.346 0.654 26 H 0.338 0.662 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.385 0.615 32 H 0.124 0.876 33 H 0.271 0.729 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 2.053 4.216 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 H 0.054 0.946 4 N -0.381 5.381 5 C -0.162 4.162 6 C 0.012 3.988 7 N -0.389 5.389 8 C -0.143 4.143 9 C -0.077 4.077 10 N -0.193 5.193 11 C 0.128 3.872 12 C -0.453 4.453 13 H 0.107 0.893 14 C -0.155 4.155 15 N -0.351 5.351 16 Si 0.739 3.261 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.185 1.185 20 N -0.285 5.285 21 C -0.073 4.073 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.884 1.637 4.081 12.671 hybrid contribution -0.055 0.929 0.110 0.937 sum -11.939 2.566 4.191 12.911 Atomic orbital electron populations 1.21808 0.94556 1.02463 1.01389 1.21251 0.95308 0.95142 0.90546 0.94590 1.58816 1.16966 1.58304 1.03984 1.21823 0.95437 1.01900 0.97021 1.21022 0.92669 0.96127 0.89031 1.43503 1.03529 1.64501 1.27335 1.19215 0.85006 1.09029 1.01086 1.22653 0.89762 0.97688 0.97571 1.69263 1.12105 1.19230 1.18680 1.19809 0.93935 0.88436 0.85065 1.19082 0.88296 1.24953 1.12931 0.89330 1.25995 1.01052 0.94424 0.94078 1.70155 1.35554 1.19961 1.09457 0.86208 0.81433 0.79655 0.78847 1.19587 1.20235 1.18464 1.68556 1.02088 1.24771 1.33048 1.22194 0.92893 0.98077 0.94167 0.92938 0.92273 0.91844 0.84010 0.84990 0.90678 0.91264 0.93953 0.93438 0.78234 0.85860 0.91818 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.49 37.16 0.35 -0.86 16 2 C 0.09 0.87 3.43 -67.71 -0.23 0.64 16 3 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 4 N -0.85 -8.37 9.25 -4.67 -0.04 -8.41 16 5 C -0.12 -1.37 5.01 -26.73 -0.13 -1.50 16 6 C 0.14 1.94 4.71 -4.04 -0.02 1.92 16 7 N -0.75 -12.66 5.71 -58.23 -0.33 -13.00 16 8 C -0.04 -0.84 6.72 -83.32 -0.56 -1.40 16 9 C 0.10 2.43 10.58 -16.93 -0.18 2.25 16 10 N -0.48 -13.49 7.86 -12.49 -0.10 -13.59 16 11 C 0.37 10.75 7.35 -158.22 -1.16 9.59 16 12 C -0.42 -11.84 9.35 -37.80 -0.35 -12.19 16 13 H 0.09 2.44 7.85 -52.49 -0.41 2.03 16 14 C 0.07 1.82 5.49 -17.34 -0.10 1.73 16 15 N -0.73 -19.83 11.44 55.55 0.64 -19.19 16 16 Si 0.91 19.29 29.56 -169.99 -5.03 14.27 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 20 N -0.57 -15.40 10.34 -12.49 -0.13 -15.53 16 21 C 0.10 2.35 11.20 -16.93 -0.19 2.16 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.35 3.55 7.25 -39.29 -0.28 3.27 16 26 H 0.34 2.74 9.04 -39.29 -0.36 2.38 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.04 0.63 7.97 -51.93 -0.41 0.22 16 30 H 0.05 0.70 6.53 -51.93 -0.34 0.36 16 31 H 0.38 5.69 8.50 -40.82 -0.35 5.34 16 32 H 0.12 2.68 6.88 -52.48 -0.36 2.32 16 33 H 0.27 6.66 8.29 -40.82 -0.34 6.32 16 34 H 0.13 2.46 8.06 -52.49 -0.42 2.03 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -31.36 288.03 -7.83 -39.19 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.61 Total: 9.58 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.57 Total: 2.34 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: 0.03 Total: -69.72 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.36 -7.83 -39.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891046.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.508 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds