Wall clock time and date at job start Sun Mar 29 2020 21:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47278 * 2 1 4 4 N 1.46903 * 109.46965 * 119.99986 * 2 1 3 5 5 C 1.53001 * 109.47128 * 240.00272 * 2 1 3 6 6 C 1.53006 * 109.46899 * 174.99979 * 5 2 1 7 7 N 1.46505 * 109.46870 * 179.97438 * 6 5 2 8 8 C 1.38792 * 119.99594 * 179.97438 * 7 6 5 9 9 C 1.40088 * 120.76420 * 359.72909 * 8 7 6 10 10 N 1.31653 * 119.13667 * 179.71399 * 9 8 7 11 11 C 1.33597 * 120.79906 * 0.56736 * 10 9 8 12 12 C 1.41144 * 119.17844 * 179.68082 * 11 10 9 13 13 H 1.07995 * 120.00357 * 173.64796 * 12 11 10 14 14 C 1.40040 * 119.99884 * 353.64684 * 12 11 10 15 15 N 1.30734 * 119.99928 * 6.34391 * 14 12 11 16 16 Si 1.86796 * 120.00068 * 186.33851 * 14 12 11 17 17 H 1.48501 * 109.47175 * 94.99082 * 16 14 12 18 18 H 1.48507 * 109.46917 * 214.98713 * 16 14 12 19 19 H 1.48498 * 109.47231 * 334.98512 * 16 14 12 20 20 N 1.33610 * 121.65256 * 359.70277 * 11 10 9 21 21 C 1.31661 * 120.79052 * 0.02562 * 20 11 10 22 22 H 1.08991 * 109.47206 * 300.00306 * 1 2 3 23 23 H 1.09006 * 109.46867 * 59.99572 * 1 2 3 24 24 H 1.09003 * 109.47198 * 179.97438 * 1 2 3 25 25 H 1.00901 * 110.99617 * 176.04261 * 4 2 1 26 26 H 1.00900 * 111.00160 * 300.00143 * 4 2 1 27 27 H 1.08996 * 109.46888 * 294.99825 * 5 2 1 28 28 H 1.08999 * 109.47249 * 54.99900 * 5 2 1 29 29 H 1.08996 * 109.47225 * 299.99639 * 6 5 2 30 30 H 1.08996 * 109.46748 * 59.99886 * 6 5 2 31 31 H 0.97001 * 119.99496 * 0.02562 * 7 6 5 32 32 H 1.08003 * 120.42527 * 359.96765 * 9 8 7 33 33 H 0.97003 * 119.99781 * 179.97438 * 15 14 12 34 34 H 1.08000 * 120.42920 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2493 6 6 3.5649 -0.6132 -1.3137 7 7 4.0533 -1.3043 -2.5096 8 6 5.4135 -1.3407 -2.7831 9 6 6.3329 -0.7173 -1.9296 10 7 7.6164 -0.7766 -2.2168 11 6 8.0437 -1.4113 -3.3119 12 6 9.4269 -1.4481 -3.5904 13 1 9.7966 -2.0421 -4.4130 14 6 10.3200 -0.7142 -2.7999 15 7 9.8906 -0.0954 -1.7313 16 14 12.1248 -0.6194 -3.2722 17 1 12.3653 0.6139 -4.0636 18 1 12.9572 -0.5888 -2.0427 19 1 12.4867 -1.8080 -4.0855 20 7 7.1944 -2.0119 -4.1505 21 6 5.8979 -1.9965 -3.9223 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.0262 -0.7626 1.1909 26 1 1.6961 -0.2350 2.0386 27 1 1.7517 -1.7714 -1.2056 28 1 1.6054 -0.2617 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9994 -1.0727 -0.4260 31 1 3.4259 -1.7357 -3.1106 32 1 5.9935 -0.1983 -1.0454 33 1 10.5093 0.4127 -1.1835 34 1 5.2166 -2.4835 -4.6043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170891046.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:00 Heat of formation + Delta-G solvation = 16.721485 kcal Electronic energy + Delta-G solvation = -16005.337666 eV Core-core repulsion = 13357.757214 eV Total energy + Delta-G solvation = -2647.580452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87934 -38.44042 -36.45733 -35.17339 -33.66916 -31.87555 -30.24525 -29.40669 -26.94603 -25.25517 -23.90183 -22.60965 -21.21478 -19.72224 -18.14268 -17.45229 -17.05441 -16.94711 -16.44277 -16.04926 -15.40728 -15.22345 -14.65370 -14.55449 -14.39274 -13.79086 -13.03867 -12.98490 -12.92601 -12.73877 -12.55265 -12.38179 -12.23102 -12.00745 -11.84307 -11.41312 -11.22671 -11.13778 -10.70365 -9.59599 -9.22917 -8.49647 -8.32131 -6.32900 0.87079 1.01635 1.43197 1.54497 1.58835 2.27624 2.79879 2.84839 3.61854 3.88262 3.96446 4.02884 4.08259 4.11031 4.23613 4.34719 4.50092 4.60634 4.61897 4.73754 4.94271 5.01047 5.16853 5.19387 5.22511 5.34430 5.37579 5.58102 6.24444 6.25827 6.52347 6.57998 6.58998 6.80024 7.09040 7.32815 8.29453 8.51213 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.048798 B = 0.004635 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.651896 B = 6040.171704 C = 6514.205839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.089 3.911 3 H 0.037 0.963 4 N -0.856 5.856 5 C -0.112 4.112 6 C 0.135 3.865 7 N -0.737 5.737 8 C -0.008 4.008 9 C 0.075 3.925 10 N -0.507 5.507 11 C 0.337 3.663 12 C -0.459 4.459 13 H 0.082 0.918 14 C 0.026 3.974 15 N -0.765 5.765 16 Si 0.995 3.005 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.258 1.258 20 N -0.588 5.588 21 C 0.084 3.916 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.342 0.658 26 H 0.348 0.652 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.400 0.600 32 H 0.144 0.856 33 H 0.279 0.721 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 2.319 4.350 14.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.055 0.945 4 N -0.388 5.388 5 C -0.150 4.150 6 C 0.010 3.990 7 N -0.374 5.374 8 C -0.115 4.115 9 C -0.101 4.101 10 N -0.224 5.224 11 C 0.093 3.907 12 C -0.497 4.497 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.390 5.390 16 Si 0.815 3.185 17 H -0.188 1.188 18 H -0.188 1.188 19 H -0.182 1.182 20 N -0.307 5.307 21 C -0.089 4.089 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.155 0.845 26 H 0.161 0.839 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.235 0.765 32 H 0.161 0.839 33 H 0.089 0.911 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.297 1.902 4.237 14.085 hybrid contribution 0.057 0.824 0.108 0.833 sum -13.240 2.726 4.345 14.199 Atomic orbital electron populations 1.21777 0.93248 1.02430 1.02376 1.21274 0.96293 0.94871 0.89856 0.94507 1.58842 1.16716 1.58659 1.04627 1.21741 0.92752 1.02163 0.98348 1.21186 0.94933 0.95406 0.87506 1.43604 1.01685 1.63823 1.28285 1.19229 0.86937 1.05923 0.99367 1.23029 0.89362 0.98753 0.98906 1.69179 1.14142 1.20111 1.18976 1.20127 0.94787 0.89802 0.85998 1.19355 0.89176 1.27008 1.14157 0.90013 1.26907 1.05741 0.93284 0.93526 1.70228 1.37583 1.20697 1.10477 0.85017 0.74921 0.79705 0.78874 1.18822 1.18809 1.18191 1.68542 1.03728 1.25131 1.33306 1.22830 0.92346 0.98400 0.95360 0.92044 0.91300 0.92338 0.84467 0.83886 0.90855 0.90046 0.94267 0.93790 0.76497 0.83914 0.91067 0.81856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.49 71.98 0.68 -1.30 16 2 C 0.09 1.52 3.43 44.92 0.15 1.67 16 3 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 4 N -0.86 -15.24 9.25 -168.67 -1.56 -16.80 16 5 C -0.11 -2.16 5.01 30.60 0.15 -2.01 16 6 C 0.13 3.51 4.71 86.38 0.41 3.92 16 7 N -0.74 -23.03 5.71 -338.13 -1.93 -24.96 16 8 C -0.01 -0.34 6.72 38.94 0.26 -0.07 16 9 C 0.07 3.65 10.58 85.17 0.90 4.55 16 10 N -0.51 -29.45 7.86 -193.42 -1.52 -30.97 16 11 C 0.34 20.21 7.35 134.95 0.99 21.20 16 12 C -0.46 -27.14 9.35 23.42 0.22 -26.92 16 13 H 0.08 4.70 7.85 -2.91 -0.02 4.68 16 14 C 0.03 1.42 5.49 85.29 0.47 1.88 16 15 N -0.77 -42.70 11.44 21.84 0.25 -42.45 16 16 Si 1.00 40.15 29.56 68.60 2.03 42.18 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 N -0.59 -32.48 10.34 -193.41 -2.00 -34.48 16 21 C 0.08 3.85 11.20 85.17 0.95 4.81 16 22 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.34 6.52 7.25 -89.69 -0.65 5.87 16 26 H 0.35 4.98 9.04 -89.69 -0.81 4.17 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.08 7.97 -2.39 -0.02 1.07 16 30 H 0.04 1.22 6.53 -2.39 -0.02 1.20 16 31 H 0.40 10.49 8.50 -92.71 -0.79 9.70 16 32 H 0.14 6.17 6.88 -2.91 -0.02 6.15 16 33 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 34 H 0.16 6.00 8.06 -2.91 -0.02 5.98 16 Total: -1.00 -69.42 288.03 -0.65 -70.07 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -1.11 Total: 29.68 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.19 Total: 7.73 kcal Atomic # 7 Polarization: -142.90 SS G_CDS: -6.76 Total: -149.66 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -69.42 -0.65 -70.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170891046.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.795 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds