Wall clock time and date at job start Sun Mar 29 2020 22:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46900 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47313 * 119.99835 * 10 8 6 13 13 H 1.48495 * 109.47167 * 239.99756 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 C 1.47196 * 112.84925 * 48.80253 * 16 15 14 18 18 N 4.85316 * 131.55963 * 121.89510 * 2 1 3 19 19 C 1.53788 * 113.61464 * 277.49822 * 16 15 14 20 20 C 1.53776 * 87.08150 * 220.01603 * 19 16 15 21 21 C 1.53777 * 113.61830 * 180.02562 * 16 15 14 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 28 28 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 29 29 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 30 30 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 31 31 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 32 32 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 33 33 H 1.09008 * 113.60883 * 334.56845 * 19 16 15 34 34 H 1.08998 * 113.61115 * 105.46665 * 19 16 15 35 35 H 1.08994 * 113.61545 * 270.88099 * 20 19 16 36 36 H 1.09010 * 113.61312 * 139.97909 * 20 19 16 37 37 H 1.09003 * 113.61239 * 254.52907 * 21 16 15 38 38 H 1.09000 * 113.61577 * 25.42712 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 4.8913 -2.8124 -5.0865 12 1 6.7646 -1.2768 -5.2084 13 1 6.9630 -3.3338 -3.9396 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 6 3.8121 -1.3145 3.2967 18 7 4.7496 -1.9187 3.0832 19 6 1.5045 -1.3284 4.3094 20 6 2.1632 -0.8690 5.6208 21 6 2.6990 0.3398 4.8362 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 3.8533 0.4369 -1.3572 28 1 3.9995 -1.0728 -0.4258 29 1 7.2197 -0.8012 -2.1916 30 1 2.9173 -1.1205 1.0288 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5525 33 1 0.5004 -0.9305 4.1623 34 1 1.5629 -2.4043 4.1450 35 1 2.9447 -1.5409 5.9756 36 1 1.4477 -0.6021 6.3987 37 1 3.7219 0.6110 5.0974 38 1 2.0213 1.1935 4.8332 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:12 Heat of formation + Delta-G solvation = 26.495661 kcal Electronic energy + Delta-G solvation = -16680.982852 eV Core-core repulsion = 14137.366584 eV Total energy + Delta-G solvation = -2543.616269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.91875 -36.88790 -35.56604 -33.23652 -31.56351 -29.29372 -27.19502 -25.86487 -25.07296 -23.02497 -21.45772 -20.95381 -19.50664 -16.64272 -16.45214 -15.69020 -15.14173 -14.94601 -14.55477 -14.34637 -13.62315 -13.09391 -12.95369 -12.71002 -12.58295 -12.47770 -12.26961 -11.80600 -11.74980 -11.60457 -11.31887 -11.10258 -10.96051 -10.91358 -10.64377 -10.44716 -10.38692 -10.03081 -9.75890 -9.26566 -9.00764 -8.34409 -8.04410 -5.98007 -4.00533 2.91346 2.99861 3.32793 3.40136 3.44271 3.91647 4.27678 4.42362 4.47980 4.62141 4.80746 4.94097 5.26077 5.38042 5.46496 5.53899 5.56824 5.62775 5.72635 5.74358 5.80205 5.87992 5.93224 6.02245 6.14964 6.17153 6.34045 6.50317 6.51976 6.89804 7.08018 7.43518 7.61442 7.75391 7.81303 7.85703 8.00457 8.43871 9.06265 9.63847 11.13236 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.005892 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.598115 B = 4750.790264 C = 5492.646140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.519 4.519 7 H 0.056 0.944 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.077 3.923 16 C 0.009 3.991 17 C 0.220 3.780 18 N -0.414 5.414 19 C -0.107 4.107 20 C -0.147 4.147 21 C -0.119 4.119 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.012 0.988 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.351 0.649 31 H 0.038 0.962 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 3.788 13.880 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.074 0.926 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.323 5.323 15 C -0.054 4.054 16 C 0.005 3.995 17 C -0.098 4.098 18 N -0.088 5.088 19 C -0.145 4.145 20 C -0.184 4.184 21 C -0.158 4.158 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.173 0.827 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.048 2.640 13.724 17.815 hybrid contribution 1.037 0.307 -1.088 1.534 sum -10.011 2.948 12.636 16.388 Atomic orbital electron populations 1.21782 0.95518 1.01770 1.00218 1.21621 0.94619 0.96113 0.90412 0.94270 1.21837 0.99647 0.99488 0.94360 1.19126 0.88818 0.96819 0.96944 1.21251 0.91968 1.34340 1.08216 0.92586 1.25036 0.97101 0.95600 0.96713 1.69973 1.02323 1.44101 1.36935 0.86548 0.78882 0.79505 0.83162 1.19688 1.21033 1.21017 1.60653 1.34825 1.32273 1.04531 1.21955 1.00592 0.93578 0.89242 1.19229 0.88351 0.95544 0.96380 1.28208 0.93824 0.94001 0.93769 1.81291 1.11150 1.09072 1.07331 1.22912 0.97285 1.00784 0.93552 1.22942 1.00590 0.97736 0.97173 1.22994 1.02735 0.97333 0.92777 0.93679 0.93009 0.92325 0.92471 0.92579 0.97004 0.96929 0.93083 0.82673 0.94397 0.89412 0.88173 0.90630 0.90229 0.90609 0.90729 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.41 37.16 0.35 -1.49 16 2 C 0.08 1.38 2.65 -67.71 -0.18 1.20 16 3 H 0.04 0.68 7.80 -51.93 -0.40 0.27 16 4 C -0.12 -2.41 4.74 -26.73 -0.13 -2.53 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 10 Si 0.89 22.37 29.54 -169.99 -5.02 17.34 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 N -0.69 -11.26 6.23 -106.72 -0.66 -11.92 16 15 C 0.08 0.98 5.00 -3.83 -0.02 0.96 16 16 C 0.01 0.10 1.10 -156.49 -0.17 -0.07 16 17 C 0.22 3.54 12.79 -20.77 -0.27 3.28 16 18 N -0.41 -8.12 18.53 42.14 0.78 -7.34 16 19 C -0.11 -0.98 7.20 -25.92 -0.19 -1.17 16 20 C -0.15 -1.16 7.79 -25.94 -0.20 -1.36 16 21 C -0.12 -1.01 7.21 -25.94 -0.19 -1.19 16 22 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.01 0.35 6.43 -51.93 -0.33 0.02 16 29 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 30 H 0.35 6.95 5.22 -39.29 -0.21 6.74 16 31 H 0.04 0.51 8.06 -51.93 -0.42 0.10 16 32 H 0.09 0.89 7.24 -51.93 -0.38 0.52 16 33 H 0.10 0.75 7.96 -51.92 -0.41 0.34 16 34 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.08 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.08 0.46 8.14 -51.92 -0.42 0.03 16 37 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 38 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 313.64 15.07 4.73 4.73 Total: -1.00 -32.65 313.64 -7.27 -39.93 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.30 Total: 0.20 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.53 Total: -15.84 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.85 Total: -46.36 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.65 -7.27 -39.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.421 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds