Wall clock time and date at job start Sun Mar 29 2020 22:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46900 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47313 * 119.99835 * 10 8 6 13 13 H 1.48495 * 109.47167 * 239.99756 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.52996 * 109.47450 * 180.02562 * 15 14 2 17 17 C 1.47196 * 112.84925 * 48.80253 * 16 15 14 18 18 N 4.85316 * 131.55963 * 121.89510 * 2 1 3 19 19 C 1.53788 * 113.61464 * 277.49822 * 16 15 14 20 20 C 1.53776 * 87.08150 * 220.01603 * 19 16 15 21 21 C 1.53777 * 113.61830 * 180.02562 * 16 15 14 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 26 26 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 27 27 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 28 28 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 29 29 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 30 30 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 31 31 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 32 32 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 33 33 H 1.09008 * 113.60883 * 334.56845 * 19 16 15 34 34 H 1.08998 * 113.61115 * 105.46665 * 19 16 15 35 35 H 1.08994 * 113.61545 * 270.88099 * 20 19 16 36 36 H 1.09010 * 113.61312 * 139.97909 * 20 19 16 37 37 H 1.09003 * 113.61239 * 254.52907 * 21 16 15 38 38 H 1.09000 * 113.61577 * 25.42712 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 4.8913 -2.8124 -5.0865 12 1 6.7646 -1.2768 -5.2084 13 1 6.9630 -3.3338 -3.9396 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5961 -0.5328 3.5742 17 6 3.8121 -1.3145 3.2967 18 7 4.7496 -1.9187 3.0832 19 6 1.5045 -1.3284 4.3094 20 6 2.1632 -0.8690 5.6208 21 6 2.6990 0.3398 4.8362 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6055 -0.2618 -2.1369 27 1 3.8533 0.4369 -1.3572 28 1 3.9995 -1.0728 -0.4258 29 1 7.2197 -0.8012 -2.1916 30 1 2.9173 -1.1205 1.0288 31 1 2.7588 1.0462 2.1183 32 1 1.0870 0.6163 2.5525 33 1 0.5004 -0.9305 4.1623 34 1 1.5629 -2.4043 4.1450 35 1 2.9447 -1.5409 5.9756 36 1 1.4477 -0.6021 6.3987 37 1 3.7219 0.6110 5.0974 38 1 2.0213 1.1935 4.8332 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477209.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:12 Heat of formation + Delta-G solvation = 5.347880 kcal Electronic energy + Delta-G solvation = -16681.899889 eV Core-core repulsion = 14137.366584 eV Total energy + Delta-G solvation = -2544.533305 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81937 -38.26703 -36.88873 -35.29445 -33.11223 -30.94765 -28.20758 -27.01984 -26.54556 -24.21602 -23.18322 -21.85538 -20.97979 -18.62021 -17.55045 -16.92479 -16.60963 -16.44493 -15.92441 -15.39188 -14.90654 -14.53316 -14.48849 -14.21658 -13.97706 -13.91711 -13.30095 -13.14815 -13.06056 -12.91235 -12.81261 -12.64313 -12.44365 -12.25553 -12.00632 -11.64386 -11.59995 -11.41163 -11.20012 -11.07924 -10.92932 -10.62233 -9.33099 -8.26437 -6.37992 1.33285 1.34641 1.47936 1.69608 1.73641 2.35258 2.87193 3.06584 3.18098 3.64128 3.80745 3.94997 4.00796 4.09804 4.35119 4.49827 4.52269 4.69073 4.77206 4.80075 4.91720 4.96501 5.01370 5.07810 5.11743 5.14974 5.20422 5.22520 5.24593 5.44652 5.51697 5.56190 5.63384 5.78058 6.17964 6.21789 6.29110 6.57859 6.79703 7.31954 8.85233 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.027136 B = 0.005892 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.598115 B = 4750.790264 C = 5492.646140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.085 3.915 3 H 0.033 0.967 4 C -0.105 4.105 5 C 0.028 3.972 6 C -0.542 4.542 7 H 0.061 0.939 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.965 3.035 11 H -0.258 1.258 12 H -0.275 1.275 13 H -0.282 1.282 14 N -0.691 5.691 15 C 0.077 3.923 16 C -0.009 4.009 17 C 0.244 3.756 18 N -0.493 5.493 19 C -0.099 4.099 20 C -0.139 4.139 21 C -0.107 4.107 22 H 0.074 0.926 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.061 0.939 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.262 0.738 30 H 0.325 0.675 31 H 0.025 0.975 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.065 0.935 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.708 4.514 14.391 21.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.024 4.024 3 H 0.051 0.949 4 C -0.143 4.143 5 C -0.009 4.009 6 C -0.580 4.580 7 H 0.079 0.921 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.182 1.182 12 H -0.200 1.200 13 H -0.208 1.208 14 N -0.323 5.323 15 C -0.053 4.053 16 C -0.013 4.013 17 C -0.073 4.073 18 N -0.169 5.169 19 C -0.137 4.137 20 C -0.176 4.176 21 C -0.146 4.146 22 H 0.093 0.907 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.043 0.957 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.084 0.916 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.730 3.376 14.243 20.069 hybrid contribution 1.852 0.117 -1.225 2.223 sum -11.878 3.494 13.018 17.965 Atomic orbital electron populations 1.21693 0.92039 1.02301 1.02177 1.21593 0.97145 0.94914 0.88774 0.94869 1.21678 0.95557 0.99876 0.97139 1.18991 0.92722 0.94300 0.94933 1.21742 0.92583 1.34532 1.09178 0.92093 1.26033 0.97408 0.96353 1.00245 1.70120 1.02694 1.45585 1.39113 0.85392 0.78508 0.78223 0.78915 1.18193 1.20009 1.20755 1.60796 1.32994 1.33155 1.05372 1.22177 1.02535 0.92578 0.88050 1.19752 0.87352 0.96758 0.97457 1.29241 0.93840 0.92647 0.91578 1.81281 1.13854 1.11867 1.09882 1.23005 0.97723 0.99593 0.93374 1.22903 1.00561 0.96826 0.97359 1.23096 1.03301 0.98188 0.90000 0.90710 0.92105 0.92469 0.93053 0.91985 0.99762 0.99740 0.92952 0.85624 0.95656 0.85366 0.85150 0.92295 0.91857 0.87545 0.91628 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 9.41 71.98 0.68 -2.30 16 2 C 0.09 2.79 2.65 44.92 0.12 2.91 16 3 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 4 C -0.10 -4.41 4.74 30.60 0.15 -4.26 16 5 C 0.03 1.52 4.80 29.85 0.14 1.67 16 6 C -0.54 -32.37 9.11 25.60 0.23 -32.13 16 7 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 8 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 9 N -0.93 -60.15 13.29 21.45 0.28 -59.87 16 10 Si 0.97 46.49 29.54 68.60 2.03 48.51 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 13 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 14 N -0.69 -22.33 6.23 -491.56 -3.06 -25.39 16 15 C 0.08 1.80 5.00 86.30 0.43 2.23 16 16 C -0.01 -0.20 1.10 -53.46 -0.06 -0.26 16 17 C 0.24 8.17 12.79 89.45 1.14 9.31 16 18 N -0.49 -20.75 18.53 20.00 0.37 -20.37 16 19 C -0.10 -1.54 7.20 31.12 0.22 -1.32 16 20 C -0.14 -1.78 7.79 31.11 0.24 -1.54 16 21 C -0.11 -1.50 7.21 31.11 0.22 -1.28 16 22 H 0.07 1.37 7.45 -2.39 -0.02 1.35 16 23 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.02 -0.94 6.43 -2.39 -0.02 -0.96 16 29 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.33 13.45 5.22 -89.69 -0.47 12.99 16 31 H 0.03 0.66 8.06 -2.39 -0.02 0.64 16 32 H 0.13 2.00 7.24 -2.38 -0.02 1.98 16 33 H 0.13 1.30 7.96 -2.38 -0.02 1.28 16 34 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 35 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 36 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.14 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -75.42 313.64 4.17 -71.25 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.56 Total: 12.54 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 3.99 Total: -26.67 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -2.41 Total: -105.63 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.42 4.17 -71.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477209.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.598 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds