Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46863 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00216 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99579 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46492 * 299.99554 * 10 8 6 14 14 N 1.46899 * 109.46699 * 240.00245 * 2 1 3 15 15 C 1.46898 * 111.00116 * 85.00212 * 14 2 1 16 16 C 1.52998 * 109.47037 * 179.97438 * 15 14 2 17 17 C 1.47199 * 112.84991 * 48.80218 * 16 15 14 18 18 N 4.85316 * 87.90591 * 234.85116 * 2 1 3 19 19 C 1.53780 * 113.61251 * 277.49290 * 16 15 14 20 20 C 1.53782 * 87.08398 * 220.01822 * 19 16 15 21 21 C 1.53780 * 113.61323 * 180.02562 * 16 15 14 22 22 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47043 * 299.99871 * 1 2 3 24 24 H 1.09002 * 109.46750 * 59.99849 * 1 2 3 25 25 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 26 26 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 27 27 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 28 28 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 29 29 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 30 30 H 1.00905 * 110.99424 * 208.95193 * 14 2 1 31 31 H 1.08995 * 109.47098 * 299.99749 * 15 14 2 32 32 H 1.08997 * 109.46885 * 59.99536 * 15 14 2 33 33 H 1.08999 * 113.61772 * 334.57031 * 19 16 15 34 34 H 1.09005 * 113.61329 * 105.47195 * 19 16 15 35 35 H 1.08994 * 113.61959 * 270.88974 * 20 19 16 36 36 H 1.08998 * 113.61660 * 139.98069 * 20 19 16 37 37 H 1.09004 * 113.61420 * 254.52840 * 21 16 15 38 38 H 1.09002 * 113.61887 * 25.43204 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3232 2.5444 7 1 3.3686 -1.8030 3.2139 8 6 5.4189 -1.3646 2.8131 9 7 6.2699 -0.7849 1.9949 10 14 6.0416 -2.2452 4.3383 11 1 5.6431 -3.6745 4.2820 12 1 7.5221 -2.1465 4.3970 13 1 5.4546 -1.6148 5.5480 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5328 -3.5742 17 6 1.8950 -1.8081 -3.7952 18 7 1.3527 -2.7921 -3.9656 19 6 4.1283 -0.6527 -3.6270 20 6 4.0182 -0.3913 -5.1384 21 6 2.7002 0.3402 -4.8359 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7517 -1.7716 1.2055 26 1 1.6054 -0.2617 2.1369 27 1 3.8533 0.4370 1.3574 28 1 3.9995 -1.0727 0.4259 29 1 7.2209 -0.8143 2.1836 30 1 2.9173 -1.1205 -1.0288 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1181 33 1 4.6471 0.1373 -3.0839 34 1 4.4971 -1.6488 -3.3819 35 1 3.8890 -1.2976 -5.7301 36 1 4.8002 0.2611 -5.5269 37 1 1.9155 0.1460 -5.5672 38 1 2.8287 1.4015 -4.6233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172477213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = 25.139774 kcal Electronic energy + Delta-G solvation = -16658.566959 eV Core-core repulsion = 14114.891895 eV Total energy + Delta-G solvation = -2543.675064 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91091 -36.88673 -35.52781 -33.26124 -31.55987 -29.28958 -27.26130 -25.83394 -25.08243 -22.97248 -21.43177 -20.99667 -19.52668 -16.77730 -16.33829 -15.58447 -15.34672 -14.72877 -14.54329 -14.34340 -13.79315 -13.06147 -12.90984 -12.66176 -12.53094 -12.50782 -12.20763 -12.15332 -11.68853 -11.46071 -11.39320 -11.19086 -10.93555 -10.89993 -10.57905 -10.50052 -10.28041 -10.08858 -9.75833 -9.29202 -9.05265 -8.36978 -8.04468 -6.02366 -4.03961 2.88961 3.00803 3.32890 3.37027 3.40102 3.91977 4.27753 4.43761 4.45066 4.66898 4.79128 4.88968 5.31557 5.34464 5.46589 5.55253 5.60254 5.64034 5.70194 5.77914 5.81783 5.90066 5.97700 5.99865 6.16412 6.19104 6.34791 6.51100 6.52330 6.89708 7.06581 7.43538 7.59454 7.77045 7.81788 7.85467 7.97310 8.41140 9.02125 9.60276 11.08804 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.005850 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.354260 B = 4785.151228 C = 5382.371909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.040 0.960 4 C -0.116 4.116 5 C 0.022 3.978 6 C -0.520 4.520 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.690 5.690 15 C 0.078 3.922 16 C 0.005 3.995 17 C 0.250 3.750 18 N -0.439 5.439 19 C -0.123 4.123 20 C -0.144 4.144 21 C -0.117 4.117 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.013 0.987 28 H 0.015 0.985 29 H 0.260 0.740 30 H 0.354 0.646 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.545 5.578 -12.240 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.058 0.942 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.325 5.325 15 C -0.053 4.053 16 C 0.001 3.999 17 C -0.068 4.068 18 N -0.113 5.113 19 C -0.162 4.162 20 C -0.181 4.181 21 C -0.156 4.156 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.176 0.824 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.801 3.849 -12.676 14.891 hybrid contribution 1.397 0.390 1.246 1.912 sum -5.404 4.239 -11.430 13.335 Atomic orbital electron populations 1.21797 0.95804 1.01714 1.00159 1.21590 0.94455 0.96088 0.90362 0.94163 1.21838 0.99715 0.99481 0.94314 1.19117 0.88715 0.96829 0.96894 1.21203 0.91918 1.34330 1.08342 0.92776 1.25001 0.97058 0.95592 0.96679 1.69937 1.02345 1.44293 1.36961 0.86670 0.77567 0.80304 0.83550 1.20249 1.21305 1.20270 1.60596 1.34936 1.32397 1.04539 1.21933 1.00826 0.93615 0.88912 1.19269 0.95556 0.87445 0.97638 1.27929 0.93128 0.93538 0.92199 1.81164 1.09312 1.11266 1.09587 1.23087 0.92138 1.04207 0.96726 1.22900 0.97736 1.00781 0.96715 1.22976 0.98384 0.99365 0.94890 0.92495 0.92964 0.93815 0.92536 0.92675 0.96910 0.96646 0.92995 0.82381 0.90670 0.93145 0.87809 0.90325 0.90209 0.90455 0.90796 0.88100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.42 37.16 0.35 -1.64 16 2 C 0.08 1.40 2.65 -67.71 -0.18 1.22 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.26 16 4 C -0.12 -2.34 4.74 -26.73 -0.13 -2.47 16 5 C 0.02 0.53 4.80 -27.88 -0.13 0.40 16 6 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.69 -11.04 5.71 -106.73 -0.61 -11.64 16 15 C 0.08 0.97 4.94 -3.83 -0.02 0.95 16 16 C 0.00 0.05 1.03 -156.49 -0.16 -0.11 16 17 C 0.25 3.66 13.61 -20.75 -0.28 3.38 16 18 N -0.44 -7.54 18.54 42.17 0.78 -6.76 16 19 C -0.12 -1.33 7.20 -25.92 -0.19 -1.51 16 20 C -0.14 -1.24 7.79 -25.94 -0.20 -1.44 16 21 C -0.12 -0.97 7.21 -25.94 -0.19 -1.16 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.35 6.34 6.47 -39.29 -0.25 6.08 16 31 H 0.07 0.87 7.43 -51.93 -0.39 0.49 16 32 H 0.05 0.59 7.85 -51.93 -0.41 0.18 16 33 H 0.10 1.08 7.96 -51.93 -0.41 0.67 16 34 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 35 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -30.54 315.06 -7.25 -37.79 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.35 Total: 0.48 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -1.54 Total: -15.67 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.91 Total: -43.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.54 -7.25 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.934 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds