Wall clock time and date at job start Sun Mar 29 2020 22:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.46863 * 2 1 4 4 C 1.52996 * 109.47006 * 120.00216 * 2 1 3 5 5 C 1.52998 * 109.46929 * 185.00107 * 4 2 1 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 359.97438 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72505 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47050 * 59.99579 * 10 8 6 12 12 H 1.48496 * 109.47289 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46492 * 299.99554 * 10 8 6 14 14 N 1.46899 * 109.46699 * 240.00245 * 2 1 3 15 15 C 1.46898 * 111.00116 * 85.00212 * 14 2 1 16 16 C 1.52998 * 109.47037 * 179.97438 * 15 14 2 17 17 C 1.47199 * 112.84991 * 48.80218 * 16 15 14 18 18 N 4.85316 * 87.90591 * 234.85116 * 2 1 3 19 19 C 1.53780 * 113.61251 * 277.49290 * 16 15 14 20 20 C 1.53782 * 87.08398 * 220.01822 * 19 16 15 21 21 C 1.53780 * 113.61323 * 180.02562 * 16 15 14 22 22 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47043 * 299.99871 * 1 2 3 24 24 H 1.09002 * 109.46750 * 59.99849 * 1 2 3 25 25 H 1.09000 * 109.47441 * 65.00197 * 4 2 1 26 26 H 1.09002 * 109.47087 * 304.99643 * 4 2 1 27 27 H 1.09001 * 109.47671 * 60.00109 * 5 4 2 28 28 H 1.08998 * 109.47454 * 300.00107 * 5 4 2 29 29 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 30 30 H 1.00905 * 110.99424 * 208.95193 * 14 2 1 31 31 H 1.08995 * 109.47098 * 299.99749 * 15 14 2 32 32 H 1.08997 * 109.46885 * 59.99536 * 15 14 2 33 33 H 1.08999 * 113.61772 * 334.57031 * 19 16 15 34 34 H 1.09005 * 113.61329 * 105.47195 * 19 16 15 35 35 H 1.08994 * 113.61959 * 270.88974 * 20 19 16 36 36 H 1.08998 * 113.61660 * 139.98069 * 20 19 16 37 37 H 1.09004 * 113.61420 * 254.52840 * 21 16 15 38 38 H 1.09002 * 113.61887 * 25.43204 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 6 4.0672 -1.3232 2.5444 7 1 3.3686 -1.8030 3.2139 8 6 5.4189 -1.3646 2.8131 9 7 6.2699 -0.7849 1.9949 10 14 6.0416 -2.2452 4.3383 11 1 5.6431 -3.6745 4.2820 12 1 7.5221 -2.1465 4.3970 13 1 5.4546 -1.6148 5.5480 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5328 -3.5742 17 6 1.8950 -1.8081 -3.7952 18 7 1.3527 -2.7921 -3.9656 19 6 4.1283 -0.6527 -3.6270 20 6 4.0182 -0.3913 -5.1384 21 6 2.7002 0.3402 -4.8359 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.7517 -1.7716 1.2055 26 1 1.6054 -0.2617 2.1369 27 1 3.8533 0.4370 1.3574 28 1 3.9995 -1.0727 0.4259 29 1 7.2209 -0.8143 2.1836 30 1 2.9173 -1.1205 -1.0288 31 1 1.0871 0.6164 -2.5525 32 1 2.7588 1.0462 -2.1181 33 1 4.6471 0.1373 -3.0839 34 1 4.4971 -1.6488 -3.3819 35 1 3.8890 -1.2976 -5.7301 36 1 4.8002 0.2611 -5.5269 37 1 1.9155 0.1460 -5.5672 38 1 2.8287 1.4015 -4.6233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172477213.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:14 Heat of formation + Delta-G solvation = 7.092593 kcal Electronic energy + Delta-G solvation = -16659.349543 eV Core-core repulsion = 14114.891895 eV Total energy + Delta-G solvation = -2544.457649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81668 -38.24975 -36.71615 -35.21817 -33.05860 -30.90606 -28.30192 -26.94684 -26.59877 -24.11993 -23.10678 -21.89425 -20.98708 -18.53732 -17.60441 -16.76753 -16.57699 -16.43781 -15.77359 -15.46505 -14.91800 -14.48645 -14.37093 -14.15611 -13.84878 -13.74097 -13.45012 -13.15530 -13.06537 -12.93838 -12.81239 -12.68653 -12.39830 -12.33790 -11.88914 -11.66938 -11.58553 -11.34530 -11.19982 -11.05157 -10.89966 -10.51672 -9.28450 -8.18664 -6.27894 1.40077 1.41958 1.49700 1.77413 1.86398 2.41598 2.90706 3.14223 3.24019 3.61072 3.78111 3.92022 3.96630 4.12441 4.34465 4.51035 4.55164 4.70077 4.78946 4.80090 4.88384 4.89486 5.00136 5.04738 5.10552 5.12755 5.14208 5.17832 5.25527 5.45428 5.46706 5.55403 5.74415 5.86816 6.24896 6.29358 6.45987 6.67965 6.87406 7.40447 8.92063 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.005850 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.354260 B = 4785.151228 C = 5382.371909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.091 3.909 3 H 0.044 0.956 4 C -0.104 4.104 5 C 0.030 3.970 6 C -0.546 4.546 7 H 0.052 0.948 8 C 0.006 3.994 9 N -0.926 5.926 10 Si 0.957 3.043 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.268 1.268 14 N -0.702 5.702 15 C 0.078 3.922 16 C -0.003 4.003 17 C 0.267 3.733 18 N -0.491 5.491 19 C -0.129 4.129 20 C -0.136 4.136 21 C -0.100 4.100 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.056 0.944 27 H -0.008 1.008 28 H 0.001 0.999 29 H 0.263 0.737 30 H 0.339 0.661 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.878 6.774 -12.598 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.019 4.019 3 H 0.062 0.938 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.584 4.584 7 H 0.071 0.929 8 C -0.192 4.192 9 N -0.566 5.566 10 Si 0.782 3.218 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.193 1.193 14 N -0.335 5.335 15 C -0.053 4.053 16 C -0.007 4.007 17 C -0.050 4.050 18 N -0.167 5.167 19 C -0.167 4.167 20 C -0.174 4.174 21 C -0.138 4.138 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.010 0.990 28 H 0.020 0.980 29 H 0.072 0.928 30 H 0.159 0.841 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.155 5.054 -13.042 15.711 hybrid contribution 1.531 0.028 1.361 2.048 sum -5.625 5.083 -11.681 13.926 Atomic orbital electron populations 1.21723 0.93757 1.01463 1.01749 1.21495 0.95923 0.95513 0.88950 0.93792 1.21661 0.96574 0.99344 0.96633 1.18978 0.91704 0.94810 0.95240 1.21658 0.92463 1.34770 1.09497 0.92948 1.25842 0.97323 0.96302 0.99774 1.70046 1.02646 1.45286 1.38607 0.85630 0.77147 0.79143 0.79904 1.19766 1.20651 1.19336 1.60673 1.33995 1.33536 1.05279 1.22066 1.02136 0.93339 0.87715 1.19546 0.95404 0.86661 0.99051 1.28571 0.92059 0.93670 0.90672 1.81166 1.11161 1.12877 1.11463 1.23138 0.91578 1.03179 0.98839 1.22875 0.98731 1.01013 0.94747 1.23019 0.98095 1.00059 0.92672 0.93631 0.91795 0.91824 0.93745 0.92505 0.98969 0.98045 0.92805 0.84083 0.89150 0.91862 0.87303 0.92565 0.90880 0.88375 0.89995 0.85434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 9.42 71.98 0.68 -2.83 16 2 C 0.09 2.93 2.65 44.92 0.12 3.05 16 3 H 0.04 1.40 7.80 -2.38 -0.02 1.38 16 4 C -0.10 -4.25 4.74 30.59 0.15 -4.10 16 5 C 0.03 1.51 4.80 29.85 0.14 1.65 16 6 C -0.55 -30.90 9.11 25.60 0.23 -30.66 16 7 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 8 C 0.01 0.34 5.46 84.65 0.46 0.80 16 9 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 10 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 N -0.70 -22.11 5.71 -491.57 -2.81 -24.92 16 15 C 0.08 1.78 4.94 86.30 0.43 2.21 16 16 C 0.00 -0.06 1.03 -53.46 -0.06 -0.11 16 17 C 0.27 7.74 13.61 89.44 1.22 8.95 16 18 N -0.49 -17.08 18.54 20.01 0.37 -16.71 16 19 C -0.13 -2.67 7.20 31.12 0.22 -2.45 16 20 C -0.14 -2.06 7.79 31.11 0.24 -1.81 16 21 C -0.10 -1.35 7.21 31.11 0.22 -1.12 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.48 7.45 -2.39 -0.02 1.46 16 25 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.00 0.07 6.43 -2.39 -0.02 0.06 16 29 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.34 12.40 6.47 -89.69 -0.58 11.82 16 31 H 0.09 1.82 7.43 -2.39 -0.02 1.80 16 32 H 0.06 1.33 7.85 -2.39 -0.02 1.31 16 33 H 0.11 2.15 7.96 -2.39 -0.02 2.13 16 34 H 0.06 1.40 8.09 -2.38 -0.02 1.38 16 35 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 36 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 38 H 0.13 1.11 8.10 -2.39 -0.02 1.10 16 Total: -1.00 -66.31 315.06 4.38 -61.93 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.45 Total: 14.32 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.06 Total: -26.43 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -2.15 Total: -96.04 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -66.31 4.38 -61.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172477213.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.021 kcal (2) G-P(sol) polarization free energy of solvation -66.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds