Wall clock time and date at job start Sun Mar 29 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 N 1.46502 * 109.47154 * 180.02562 * 16 15 14 18 18 C 1.36345 * 125.63600 * 269.69267 * 17 16 15 19 19 C 1.34850 * 108.21821 * 179.83156 * 18 17 16 20 20 C 1.40893 * 107.41810 * 0.42363 * 19 18 17 21 21 C 1.34852 * 107.41483 * 359.73596 * 20 19 18 22 22 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 24 24 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 25 25 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 26 26 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 27 27 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 28 28 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 29 29 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 30 30 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 31 31 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 32 32 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 33 33 H 1.09007 * 109.47032 * 299.99580 * 16 15 14 34 34 H 1.08991 * 109.47451 * 59.99736 * 16 15 14 35 35 H 1.07993 * 125.88724 * 359.95869 * 18 17 16 36 36 H 1.07996 * 126.29302 * 180.16539 * 19 18 17 37 37 H 1.08000 * 126.29465 * 179.73518 * 20 19 18 38 38 H 1.08005 * 125.88766 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 5.8570 -1.9810 -3.8889 10 14 6.6266 -0.5294 -1.6581 11 1 7.0614 -1.4961 -0.6180 12 1 7.8089 -0.0647 -2.4272 13 1 5.9699 0.6337 -1.0092 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 7 2.6583 0.3796 4.7186 18 6 3.7344 1.1385 5.0723 19 6 3.4078 1.8464 6.1725 20 6 2.0848 1.5051 6.5163 21 6 1.6514 0.6060 5.6096 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6054 -0.2617 -2.1370 26 1 1.7518 -1.7715 -1.2056 27 1 3.9995 -1.0726 -0.4260 28 1 3.8532 0.4372 -1.3573 29 1 6.8077 -2.0067 -4.0799 30 1 2.9174 -1.1204 1.0287 31 1 2.7588 1.0463 2.1182 32 1 1.0871 0.6163 2.5525 33 1 1.9202 -1.3567 3.8030 34 1 3.5917 -0.9261 3.3683 35 1 4.6838 1.1689 4.5585 36 1 4.0449 2.5435 6.6965 37 1 1.5213 1.8924 7.3523 38 1 0.6748 0.1450 5.5920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:19 Heat of formation + Delta-G solvation = 35.167092 kcal Electronic energy + Delta-G solvation = -16308.169617 eV Core-core repulsion = 13764.929370 eV Total energy + Delta-G solvation = -2543.240247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.13764 -37.60865 -34.30900 -32.86945 -31.13804 -29.67200 -28.81343 -27.02236 -25.30981 -22.62985 -21.17462 -20.50113 -20.09711 -19.64135 -17.40039 -16.87799 -15.76409 -15.44959 -14.68450 -14.36544 -14.00929 -13.68371 -13.37840 -13.15733 -12.75881 -12.54174 -12.42603 -12.24142 -12.10768 -11.83546 -11.60957 -11.53988 -11.27605 -11.00076 -10.59604 -10.05089 -9.84895 -9.53439 -9.25590 -8.66496 -8.60897 -8.32940 -8.20216 -6.10289 -4.08603 2.23911 2.86685 3.01470 3.22883 3.31608 3.32903 4.35841 4.38229 4.61564 4.88956 5.02911 5.18095 5.20159 5.23166 5.28858 5.43082 5.52725 5.59060 5.67797 5.71633 5.75421 6.02234 6.14700 6.22889 6.27360 6.28850 6.34124 6.63459 6.75461 6.95005 7.11379 7.18258 7.20032 7.33666 7.38546 7.55813 7.72602 8.47987 8.95127 9.51872 11.03272 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.005337 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.446088 B = 5244.673805 C = 6175.823209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.039 0.961 4 C -0.106 4.106 5 C -0.015 4.015 6 C -0.520 4.520 7 H 0.073 0.927 8 C 0.067 3.933 9 N -0.902 5.902 10 Si 0.879 3.121 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.268 1.268 14 N -0.685 5.685 15 C 0.045 3.955 16 C 0.104 3.896 17 N -0.444 5.444 18 C -0.015 4.015 19 C -0.206 4.206 20 C -0.207 4.207 21 C -0.014 4.014 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.007 0.993 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.350 0.650 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.711 5.495 17.142 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.052 4.052 6 C -0.558 4.558 7 H 0.091 0.909 8 C -0.134 4.134 9 N -0.541 5.541 10 Si 0.706 3.294 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.193 1.193 14 N -0.320 5.320 15 C -0.085 4.085 16 C -0.018 4.018 17 N -0.119 5.119 18 C -0.145 4.145 19 C -0.231 4.231 20 C -0.232 4.232 21 C -0.144 4.144 22 H 0.079 0.921 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.026 0.974 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.171 0.829 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.176 4.957 16.893 19.411 hybrid contribution 1.598 0.964 0.261 1.884 sum -6.578 5.922 17.154 19.303 Atomic orbital electron populations 1.21782 0.95228 1.01996 1.00442 1.21661 0.95017 0.96042 0.90053 0.94283 1.21672 0.98060 1.00160 0.94530 1.19609 0.91912 0.96538 0.97135 1.21116 0.92944 1.34298 1.07440 0.90927 1.25039 0.98411 0.94900 0.95090 1.69909 1.14654 1.43306 1.26208 0.86797 0.80928 0.80364 0.81263 1.20265 1.21288 1.19307 1.60530 1.34446 1.32450 1.04557 1.22272 1.01134 0.94477 0.90615 1.21856 1.03852 0.91818 0.84292 1.44161 1.11774 1.33965 1.22010 1.21887 0.93156 0.99003 1.00472 1.20874 0.97347 1.05173 0.99702 1.20872 0.96808 1.03280 1.02230 1.21841 0.94446 1.04353 0.93807 0.92105 0.93770 0.92666 0.91876 0.91719 0.97445 0.96973 0.92685 0.82862 0.94779 0.90656 0.88354 0.89283 0.82425 0.84999 0.85003 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.42 37.16 0.35 -1.48 16 2 C 0.08 1.28 2.65 -67.71 -0.18 1.10 16 3 H 0.04 0.64 7.80 -51.93 -0.40 0.23 16 4 C -0.11 -2.02 4.74 -26.73 -0.13 -2.15 16 5 C -0.01 -0.33 3.87 -27.88 -0.11 -0.44 16 6 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 7 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 10 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 14 N -0.68 -9.91 6.31 -106.73 -0.67 -10.59 16 15 C 0.05 0.57 5.81 -3.83 -0.02 0.55 16 16 C 0.10 1.14 6.35 -4.04 -0.03 1.11 16 17 N -0.44 -5.21 2.75 -117.13 -0.32 -5.54 16 18 C -0.02 -0.18 11.43 -16.75 -0.19 -0.37 16 19 C -0.21 -2.43 10.86 -39.78 -0.43 -2.87 16 20 C -0.21 -2.37 10.86 -39.78 -0.43 -2.80 16 21 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.01 0.17 5.85 -51.93 -0.30 -0.14 16 28 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.35 5.45 6.47 -39.29 -0.25 5.19 16 31 H 0.03 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.08 0.94 7.44 -51.93 -0.39 0.55 16 33 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -30.42 311.43 -8.33 -38.75 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.34 Total: 3.61 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.79 Total: -20.80 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.22 Total: -42.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.42 -8.33 -38.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.917 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds