Wall clock time and date at job start Sun Mar 29 2020 22:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46609 * 2 1 4 4 C 1.52996 * 109.47135 * 240.00254 * 2 1 3 5 5 C 1.52997 * 109.46947 * 174.99568 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46898 * 109.47244 * 119.99657 * 2 1 3 15 15 C 1.46894 * 111.00329 * 275.00457 * 14 2 1 16 16 C 1.52998 * 109.47198 * 180.02562 * 15 14 2 17 17 N 1.46502 * 109.47154 * 180.02562 * 16 15 14 18 18 C 1.36345 * 125.63600 * 269.69267 * 17 16 15 19 19 C 1.34850 * 108.21821 * 179.83156 * 18 17 16 20 20 C 1.40893 * 107.41810 * 0.42363 * 19 18 17 21 21 C 1.34852 * 107.41483 * 359.73596 * 20 19 18 22 22 H 1.09001 * 109.46609 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47067 * 299.99482 * 1 2 3 24 24 H 1.08998 * 109.47395 * 60.00534 * 1 2 3 25 25 H 1.09001 * 109.47372 * 54.99878 * 4 2 1 26 26 H 1.09004 * 109.47108 * 294.99622 * 4 2 1 27 27 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 28 28 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 29 29 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 30 30 H 1.00900 * 110.99534 * 151.04459 * 14 2 1 31 31 H 1.08997 * 109.47269 * 300.00119 * 15 14 2 32 32 H 1.09002 * 109.47227 * 60.00167 * 15 14 2 33 33 H 1.09007 * 109.47032 * 299.99580 * 16 15 14 34 34 H 1.08991 * 109.47451 * 59.99736 * 16 15 14 35 35 H 1.07993 * 125.88724 * 359.95869 * 18 17 16 36 36 H 1.07996 * 126.29302 * 180.16539 * 19 18 17 37 37 H 1.08000 * 126.29465 * 179.73518 * 20 19 18 38 38 H 1.08005 * 125.88766 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3137 6 6 4.0673 -1.3240 -2.5439 7 1 3.3689 -1.8044 -3.2130 8 6 5.4186 -1.3610 -2.8151 9 7 5.8570 -1.9810 -3.8889 10 14 6.6266 -0.5294 -1.6581 11 1 7.0614 -1.4961 -0.6180 12 1 7.8089 -0.0647 -2.4272 13 1 5.9699 0.6337 -1.0092 14 7 2.0198 -0.6924 1.1994 15 6 2.0825 0.2226 2.3469 16 6 2.5963 -0.5328 3.5741 17 7 2.6583 0.3796 4.7186 18 6 3.7344 1.1385 5.0723 19 6 3.4078 1.8464 6.1725 20 6 2.0848 1.5051 6.5163 21 6 1.6514 0.6060 5.6096 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6054 -0.2617 -2.1370 26 1 1.7518 -1.7715 -1.2056 27 1 3.9995 -1.0726 -0.4260 28 1 3.8532 0.4372 -1.3573 29 1 6.8077 -2.0067 -4.0799 30 1 2.9174 -1.1204 1.0287 31 1 2.7588 1.0463 2.1182 32 1 1.0871 0.6163 2.5525 33 1 1.9202 -1.3567 3.8030 34 1 3.5917 -0.9261 3.3683 35 1 4.6838 1.1689 4.5585 36 1 4.0449 2.5435 6.6965 37 1 1.5213 1.8924 7.3523 38 1 0.6748 0.1450 5.5920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:19 Heat of formation + Delta-G solvation = 17.266684 kcal Electronic energy + Delta-G solvation = -16308.945837 eV Core-core repulsion = 13764.929370 eV Total energy + Delta-G solvation = -2544.016467 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97221 -38.85557 -35.68495 -34.59027 -32.59169 -31.06434 -29.64008 -28.01872 -27.04773 -23.69690 -22.81814 -21.34256 -21.28575 -20.71935 -18.99022 -18.22177 -16.95105 -16.63567 -16.33836 -15.68169 -15.06292 -14.96724 -14.54788 -14.47695 -14.25387 -13.88852 -13.48027 -13.29826 -13.20950 -12.98072 -12.90678 -12.86591 -12.55553 -12.38737 -11.95526 -11.84443 -11.56927 -11.40903 -11.15623 -10.78631 -9.54208 -9.46552 -9.05309 -8.31553 -6.35817 1.31725 1.34620 1.38380 1.45108 2.01544 2.16362 2.32664 3.03428 3.27195 3.75029 3.93054 3.99387 4.22031 4.27881 4.36225 4.39431 4.40087 4.51356 4.68486 4.75469 4.79521 4.81914 4.86466 4.97280 5.00955 5.08003 5.38479 5.40802 5.44510 5.48159 5.51277 5.64256 6.04948 6.11432 6.26605 6.32537 6.36114 6.52923 6.72794 7.28782 8.85507 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.024807 B = 0.005337 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.446088 B = 5244.673805 C = 6175.823209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.089 3.911 3 H 0.036 0.964 4 C -0.099 4.099 5 C -0.009 4.009 6 C -0.532 4.532 7 H 0.031 0.969 8 C 0.004 3.996 9 N -0.952 5.952 10 Si 0.951 3.049 11 H -0.262 1.262 12 H -0.286 1.286 13 H -0.250 1.250 14 N -0.684 5.684 15 C 0.053 3.947 16 C 0.109 3.891 17 N -0.449 5.449 18 C -0.033 4.033 19 C -0.220 4.220 20 C -0.223 4.223 21 C -0.020 4.020 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.012 0.988 29 H 0.266 0.734 30 H 0.344 0.656 31 H 0.023 0.977 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 6.419 19.398 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 H 0.054 0.946 4 C -0.137 4.137 5 C -0.047 4.047 6 C -0.570 4.570 7 H 0.049 0.951 8 C -0.193 4.193 9 N -0.592 5.592 10 Si 0.774 3.226 11 H -0.187 1.187 12 H -0.212 1.212 13 H -0.174 1.174 14 N -0.318 5.318 15 C -0.077 4.077 16 C -0.013 4.013 17 N -0.124 5.124 18 C -0.163 4.163 19 C -0.245 4.245 20 C -0.247 4.247 21 C -0.150 4.150 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.111 0.889 35 H 0.186 0.814 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.514 5.887 19.165 21.782 hybrid contribution 1.634 0.645 -0.494 1.825 sum -6.880 6.532 18.671 20.943 Atomic orbital electron populations 1.21722 0.93242 1.02306 1.01567 1.21541 0.96531 0.95202 0.88824 0.94563 1.21536 0.95519 1.00219 0.96397 1.19538 0.94506 0.95568 0.95072 1.21496 0.92646 1.34206 1.08693 0.95070 1.26031 1.00694 0.95640 0.96903 1.70072 1.15304 1.45283 1.28578 0.85651 0.77954 0.79908 0.79059 1.18672 1.21207 1.17380 1.60559 1.33959 1.32723 1.04556 1.22230 1.01204 0.93892 0.90400 1.21812 1.04316 0.91673 0.83455 1.44256 1.11890 1.34094 1.22201 1.22190 0.93824 0.99351 1.00917 1.21177 0.97906 1.05469 0.99936 1.21192 0.96965 1.03604 1.02957 1.22280 0.95153 1.04159 0.93437 0.92202 0.92183 0.92043 0.92555 0.92509 0.95971 0.97012 0.92503 0.83602 0.95876 0.90197 0.87157 0.88935 0.81437 0.83953 0.83585 0.80245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 9.42 71.98 0.68 -2.50 16 2 C 0.09 2.60 2.65 44.92 0.12 2.71 16 3 H 0.04 1.10 7.80 -2.39 -0.02 1.08 16 4 C -0.10 -3.69 4.74 30.59 0.15 -3.54 16 5 C -0.01 -0.42 3.87 29.85 0.12 -0.30 16 6 C -0.53 -30.40 9.66 25.60 0.25 -30.15 16 7 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 8 C 0.00 0.23 5.47 84.65 0.46 0.70 16 9 N -0.95 -59.60 13.96 21.44 0.30 -59.30 16 10 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 13 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 14 N -0.68 -18.21 6.31 -491.59 -3.10 -21.31 16 15 C 0.05 1.19 5.81 86.30 0.50 1.69 16 16 C 0.11 2.11 6.35 86.38 0.55 2.66 16 17 N -0.45 -9.52 2.75 -524.48 -1.44 -10.96 16 18 C -0.03 -0.73 11.43 83.21 0.95 0.22 16 19 C -0.22 -4.84 10.86 22.14 0.24 -4.60 16 20 C -0.22 -4.66 10.86 22.14 0.24 -4.42 16 21 C -0.02 -0.41 11.43 83.21 0.95 0.54 16 22 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.29 7.45 -2.39 -0.02 1.27 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.02 0.94 5.85 -2.39 -0.01 0.92 16 28 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.34 9.94 6.47 -89.69 -0.58 9.36 16 31 H 0.02 0.58 8.05 -2.39 -0.02 0.56 16 32 H 0.08 1.74 7.44 -2.39 -0.02 1.72 16 33 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.17 3.19 8.06 -2.91 -0.02 3.16 16 36 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.18 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.54 311.43 3.22 -62.32 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.38 Total: 20.84 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 5.20 Total: -37.00 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.24 Total: -91.57 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -65.54 3.22 -62.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.584 kcal (2) G-P(sol) polarization free energy of solvation -65.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds