Wall clock time and date at job start Sun Mar 29 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 C 1.50705 * 109.46952 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99897 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47128 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47048 * 119.99728 * 10 8 6 13 13 H 1.48498 * 109.47151 * 239.99657 * 10 8 6 14 14 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 15 15 C 1.46899 * 111.00029 * 85.00270 * 14 2 1 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 2 17 17 N 1.46500 * 109.47473 * 179.97438 * 16 15 14 18 18 C 1.36341 * 125.63785 * 269.69842 * 17 16 15 19 19 C 1.34849 * 108.21665 * 179.82817 * 18 17 16 20 20 C 1.40888 * 107.41794 * 0.42143 * 19 18 17 21 21 C 1.34847 * 107.41968 * 359.74118 * 20 19 18 22 22 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 24 24 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 25 25 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 26 26 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 27 27 H 1.08995 * 109.47413 * 299.99524 * 5 4 2 28 28 H 1.09004 * 109.46999 * 59.99995 * 5 4 2 29 29 H 0.97007 * 119.99656 * 180.02562 * 9 8 6 30 30 H 1.00902 * 111.00190 * 321.03970 * 14 2 1 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 2 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 2 33 33 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 34 34 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 35 35 H 1.08000 * 125.88602 * 359.95130 * 18 17 16 36 36 H 1.08005 * 126.29032 * 180.15800 * 19 18 17 37 37 H 1.08001 * 126.28917 * 179.73956 * 20 19 18 38 38 H 1.07995 * 125.89464 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5443 7 1 3.3686 -1.8040 3.2134 8 6 5.4183 -1.3595 2.8162 9 7 6.2688 -0.7748 2.0012 10 14 6.0410 -2.2402 4.3413 11 1 4.8911 -2.8129 5.0864 12 1 6.9636 -3.3325 3.9402 13 1 6.7633 -1.2760 5.2095 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5327 -3.5742 17 7 2.6582 0.3798 -4.7187 18 6 1.6534 0.6020 -5.6130 19 6 2.0850 1.5055 -6.5162 20 6 3.4080 1.8467 -6.1723 21 6 3.7325 1.1429 -5.0688 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 -0.2619 2.1369 26 1 1.7516 -1.7717 1.2054 27 1 3.9994 -1.0729 0.4259 28 1 3.8531 0.4369 1.3573 29 1 7.2196 -0.8005 2.1923 30 1 1.4495 -1.4979 -1.4101 31 1 1.0870 0.6165 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 3.5916 -0.9261 -3.3684 34 1 1.9201 -1.3565 -3.8032 35 1 0.6791 0.1362 -5.5991 36 1 1.5216 1.8930 -7.3522 37 1 4.0451 2.5437 -6.6963 38 1 4.6798 1.1780 -4.5513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172478460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:21 Heat of formation + Delta-G solvation = 33.650354 kcal Electronic energy + Delta-G solvation = -16200.300502 eV Core-core repulsion = 13656.994485 eV Total energy + Delta-G solvation = -2543.306018 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04881 -37.46639 -34.15828 -32.84428 -30.94362 -29.13421 -28.72648 -26.78643 -25.05005 -22.61265 -21.36879 -20.41699 -20.11820 -19.64575 -17.29297 -16.14047 -15.67150 -15.01439 -14.74102 -14.42172 -13.90018 -13.57869 -13.29054 -12.91932 -12.71609 -12.43588 -12.26081 -12.07506 -12.01649 -11.85209 -11.36820 -11.20515 -11.18729 -10.87308 -10.44490 -10.27060 -9.68444 -9.26092 -8.93353 -8.57364 -8.27295 -8.12742 -8.03075 -5.91289 -3.92504 2.32868 2.96289 3.09622 3.34558 3.41994 3.45898 4.45262 4.51990 4.71042 4.99124 5.10045 5.26683 5.29334 5.33675 5.44433 5.45359 5.50943 5.60348 5.66638 5.75867 5.90669 6.04507 6.20376 6.30962 6.32781 6.36386 6.60195 6.82747 7.03526 7.22572 7.28947 7.34731 7.43818 7.65837 7.82047 8.03929 8.18679 8.54578 9.16547 9.70482 11.19839 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.004522 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.638340 B = 6190.525604 C = 6946.389660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 H 0.072 0.928 4 C -0.098 4.098 5 C 0.029 3.971 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.669 5.669 15 C 0.048 3.952 16 C 0.105 3.895 17 N -0.443 5.443 18 C -0.020 4.020 19 C -0.207 4.207 20 C -0.209 4.209 21 C -0.008 4.008 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.032 0.968 28 H 0.007 0.993 29 H 0.258 0.742 30 H 0.335 0.665 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.156 0.844 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 2.344 -13.236 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.024 4.024 3 H 0.091 0.909 4 C -0.136 4.136 5 C -0.008 4.008 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 N -0.299 5.299 15 C -0.082 4.082 16 C -0.018 4.018 17 N -0.118 5.118 18 C -0.150 4.150 19 C -0.231 4.231 20 C -0.234 4.234 21 C -0.138 4.138 22 H 0.073 0.927 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.153 0.847 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.195 2.217 -12.787 15.905 hybrid contribution -0.538 -0.324 0.639 0.896 sum -9.733 1.892 -12.148 15.681 Atomic orbital electron populations 1.22536 0.98442 1.01601 1.01389 1.21743 0.91022 0.98399 0.91198 0.90939 1.21637 1.00664 0.98392 0.92938 1.19006 0.88242 0.96526 0.97064 1.21382 0.91885 1.33990 1.08427 0.93030 1.25000 0.97139 0.95767 0.96537 1.69988 1.02136 1.44443 1.36923 0.86620 0.78828 0.79534 0.83496 1.19868 1.21110 1.21145 1.60445 1.57875 1.08900 1.02700 1.22253 0.99531 0.96337 0.90088 1.21859 1.04803 0.91207 0.83883 1.44173 1.11920 1.33867 1.21871 1.21789 0.94491 1.04573 0.94164 1.20854 0.96862 1.03179 1.02250 1.20874 0.97297 1.05449 0.99778 1.21950 0.93250 0.98543 1.00100 0.92691 0.92059 0.93793 0.93368 0.93389 0.94998 0.97490 0.93278 0.84694 0.95329 0.90313 0.87950 0.89685 0.82663 0.85126 0.84990 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.16 37.16 0.34 -2.02 16 2 C 0.09 1.39 2.59 -67.71 -0.18 1.22 16 3 H 0.07 1.26 7.80 -51.93 -0.40 0.85 16 4 C -0.10 -1.99 4.83 -26.73 -0.13 -2.12 16 5 C 0.03 0.74 4.86 -27.88 -0.14 0.61 16 6 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 7 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 10 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 N -0.67 -10.03 5.70 -106.72 -0.61 -10.64 16 15 C 0.05 0.63 5.81 -3.83 -0.02 0.61 16 16 C 0.10 1.21 6.35 -4.04 -0.03 1.19 16 17 N -0.44 -5.49 2.75 -117.13 -0.32 -5.81 16 18 C -0.02 -0.24 11.43 -16.75 -0.19 -0.43 16 19 C -0.21 -2.48 10.86 -39.78 -0.43 -2.91 16 20 C -0.21 -2.61 10.86 -39.78 -0.43 -3.04 16 21 C -0.01 -0.10 11.43 -16.75 -0.19 -0.29 16 22 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.52 7.45 -51.92 -0.39 0.13 16 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 30 H 0.34 4.39 8.47 -39.29 -0.33 4.06 16 31 H 0.03 0.36 7.44 -51.93 -0.39 -0.03 16 32 H 0.08 1.18 8.06 -51.93 -0.42 0.77 16 33 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.16 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -31.37 317.57 -8.76 -40.13 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.52 Total: 2.02 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -1.81 Total: -20.83 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.19 Total: -43.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.37 -8.76 -40.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.780 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds