Wall clock time and date at job start Sun Mar 29 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.52997 * 109.46982 * 184.99911 * 4 2 1 6 6 C 1.50705 * 109.46952 * 179.97438 * 5 4 2 7 7 H 1.07997 * 119.99927 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00011 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99897 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00004 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47128 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47048 * 119.99728 * 10 8 6 13 13 H 1.48498 * 109.47151 * 239.99657 * 10 8 6 14 14 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 15 15 C 1.46899 * 111.00029 * 85.00270 * 14 2 1 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 2 17 17 N 1.46500 * 109.47473 * 179.97438 * 16 15 14 18 18 C 1.36341 * 125.63785 * 269.69842 * 17 16 15 19 19 C 1.34849 * 108.21665 * 179.82817 * 18 17 16 20 20 C 1.40888 * 107.41794 * 0.42143 * 19 18 17 21 21 C 1.34847 * 107.41968 * 359.74118 * 20 19 18 22 22 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 24 24 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 25 25 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 26 26 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 27 27 H 1.08995 * 109.47413 * 299.99524 * 5 4 2 28 28 H 1.09004 * 109.46999 * 59.99995 * 5 4 2 29 29 H 0.97007 * 119.99656 * 180.02562 * 9 8 6 30 30 H 1.00902 * 111.00190 * 321.03970 * 14 2 1 31 31 H 1.09002 * 109.47043 * 299.99792 * 15 14 2 32 32 H 1.09001 * 109.47354 * 59.99854 * 15 14 2 33 33 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 34 34 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 35 35 H 1.08000 * 125.88602 * 359.95130 * 18 17 16 36 36 H 1.08005 * 126.29032 * 180.15800 * 19 18 17 37 37 H 1.08001 * 126.28917 * 179.73956 * 20 19 18 38 38 H 1.07995 * 125.89464 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3136 6 6 4.0671 -1.3234 2.5443 7 1 3.3686 -1.8040 3.2134 8 6 5.4183 -1.3595 2.8162 9 7 6.2688 -0.7748 2.0012 10 14 6.0410 -2.2402 4.3413 11 1 4.8911 -2.8129 5.0864 12 1 6.9636 -3.3325 3.9402 13 1 6.7633 -1.2760 5.2095 14 7 2.0196 -0.6925 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5961 -0.5327 -3.5742 17 7 2.6582 0.3798 -4.7187 18 6 1.6534 0.6020 -5.6130 19 6 2.0850 1.5055 -6.5162 20 6 3.4080 1.8467 -6.1723 21 6 3.7325 1.1429 -5.0688 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.6054 -0.2619 2.1369 26 1 1.7516 -1.7717 1.2054 27 1 3.9994 -1.0729 0.4259 28 1 3.8531 0.4369 1.3573 29 1 7.2196 -0.8005 2.1923 30 1 1.4495 -1.4979 -1.4101 31 1 1.0870 0.6165 -2.5525 32 1 2.7588 1.0463 -2.1182 33 1 3.5916 -0.9261 -3.3684 34 1 1.9201 -1.3565 -3.8032 35 1 0.6791 0.1362 -5.5991 36 1 1.5216 1.8930 -7.3522 37 1 4.0451 2.5437 -6.6963 38 1 4.6798 1.1780 -4.5513 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172478460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:21 Heat of formation + Delta-G solvation = 15.459228 kcal Electronic energy + Delta-G solvation = -16201.089329 eV Core-core repulsion = 13656.994485 eV Total energy + Delta-G solvation = -2544.094844 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.96821 -38.74864 -35.67378 -34.56287 -32.43010 -30.64352 -29.63665 -27.81941 -26.95756 -23.79044 -23.04700 -21.52905 -21.31914 -20.71808 -18.41291 -18.19309 -16.85211 -16.46044 -16.22574 -15.81180 -14.93532 -14.75337 -14.52707 -14.35638 -13.97845 -13.88336 -13.57220 -13.21650 -13.11124 -13.00229 -12.90274 -12.86715 -12.54735 -12.30496 -12.22740 -11.80528 -11.54976 -11.22901 -10.97815 -10.49612 -9.52711 -9.24502 -9.04857 -8.14429 -6.24753 1.38906 1.40254 1.40422 1.53562 2.02815 2.16669 2.43527 3.18259 3.33224 3.76010 3.95520 4.05201 4.24256 4.28801 4.34277 4.40301 4.42940 4.53899 4.75859 4.76700 4.80520 4.84771 4.98196 5.02395 5.08745 5.26415 5.40784 5.44743 5.45471 5.59097 5.85770 6.01383 6.12116 6.13307 6.33983 6.35809 6.50838 6.59614 6.95465 7.43739 8.97069 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.004522 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.638340 B = 6190.525604 C = 6946.389660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.092 3.908 3 H 0.055 0.945 4 C -0.088 4.088 5 C 0.037 3.963 6 C -0.541 4.541 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.280 1.280 14 N -0.686 5.686 15 C 0.060 3.940 16 C 0.112 3.888 17 N -0.449 5.449 18 C -0.021 4.021 19 C -0.222 4.222 20 C -0.220 4.220 21 C -0.034 4.034 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.006 0.994 28 H -0.026 1.026 29 H 0.261 0.739 30 H 0.349 0.651 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.183 0.817 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 1.441 -13.221 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 H 0.073 0.927 4 C -0.126 4.126 5 C 0.000 4.000 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.206 1.206 14 N -0.319 5.319 15 C -0.070 4.070 16 C -0.010 4.010 17 N -0.124 5.124 18 C -0.151 4.151 19 C -0.246 4.246 20 C -0.244 4.244 21 C -0.164 4.164 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.025 0.975 28 H -0.008 1.008 29 H 0.069 0.931 30 H 0.169 0.831 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.129 0.871 35 H 0.201 0.799 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.885 1.310 -12.778 16.837 hybrid contribution 0.008 -0.013 0.595 0.595 sum -10.877 1.297 -12.183 16.384 Atomic orbital electron populations 1.22383 0.95131 1.02778 1.02428 1.21497 0.93484 0.96745 0.90017 0.92695 1.21458 0.96449 0.99309 0.95380 1.18848 0.92288 0.93731 0.95177 1.21848 0.92491 1.34237 1.09384 0.92570 1.25950 0.97447 0.96509 0.99971 1.70128 1.02554 1.45745 1.39008 0.85466 0.78425 0.78288 0.79256 1.18594 1.20448 1.20557 1.60276 1.58744 1.09823 1.03008 1.22097 0.99598 0.95399 0.89937 1.21782 1.04619 0.91460 0.83178 1.44265 1.12083 1.33958 1.22115 1.22301 0.95179 1.04170 0.93439 1.21192 0.96820 1.03531 1.03093 1.21177 0.98022 1.05491 0.99738 1.22167 0.93885 0.99471 1.00842 0.91407 0.91706 0.92089 0.93206 0.92930 0.97536 1.00793 0.93058 0.83147 0.93891 0.93076 0.89319 0.87081 0.79945 0.83361 0.83920 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 9.16 71.98 0.66 -3.29 16 2 C 0.09 2.94 2.59 44.91 0.12 3.06 16 3 H 0.05 1.93 7.80 -2.39 -0.02 1.91 16 4 C -0.09 -3.55 4.83 30.59 0.15 -3.40 16 5 C 0.04 1.97 4.86 29.85 0.15 2.11 16 6 C -0.54 -31.46 9.11 25.60 0.23 -31.22 16 7 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 8 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 9 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 10 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 11 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 14 N -0.69 -20.15 5.70 -491.57 -2.80 -22.95 16 15 C 0.06 1.53 5.81 86.30 0.50 2.03 16 16 C 0.11 2.49 6.35 86.38 0.55 3.04 16 17 N -0.45 -10.72 2.75 -524.49 -1.44 -12.16 16 18 C -0.02 -0.45 11.43 83.21 0.95 0.50 16 19 C -0.22 -4.99 10.86 22.14 0.24 -4.75 16 20 C -0.22 -5.37 10.86 22.14 0.24 -5.13 16 21 C -0.03 -0.87 11.43 83.21 0.95 0.09 16 22 H 0.07 1.44 8.13 -2.38 -0.02 1.42 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.25 7.45 -2.38 -0.02 1.23 16 25 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 28 H -0.03 -1.56 8.14 -2.38 -0.02 -1.58 16 29 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.35 8.49 8.47 -89.69 -0.76 7.73 16 31 H 0.04 0.99 7.44 -2.39 -0.02 0.97 16 32 H 0.05 1.59 8.06 -2.39 -0.02 1.57 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -68.12 317.57 3.51 -64.61 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.25 Total: 17.87 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 5.20 Total: -36.59 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -3.96 Total: -92.96 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -68.12 3.51 -64.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172478460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.065 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds