Wall clock time and date at job start Sun Mar 29 2020 21:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46580 * 2 1 4 4 C 1.52992 * 109.47279 * 239.99696 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 N 1.46499 * 109.46700 * 119.99201 * 2 1 3 15 15 C 1.36287 * 126.48809 * 60.02788 * 14 2 1 16 16 C 1.35273 * 107.05479 * 179.97438 * 15 14 2 17 17 N 1.33367 * 108.37441 * 0.02562 * 16 15 14 18 18 C 1.31503 * 109.22838 * 359.73892 * 17 16 15 19 19 C 1.47674 * 125.84036 * 180.26758 * 18 17 16 20 20 N 1.30374 * 119.99848 * 180.16605 * 19 18 17 21 21 N 1.37937 * 119.99920 * 0.16595 * 19 18 17 22 22 H 1.09001 * 109.46924 * 60.00575 * 1 2 3 23 23 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47832 * 300.00368 * 1 2 3 25 25 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 26 26 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 29 29 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 30 30 H 1.08000 * 126.47206 * 359.96361 * 15 14 2 31 31 H 1.08004 * 125.81506 * 180.02562 * 16 15 14 32 32 H 0.96996 * 120.00020 * 180.02562 * 20 19 18 33 33 H 0.97007 * 120.00514 * 359.97438 * 21 19 18 34 34 H 0.97006 * 120.00283 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6353 0.0688 -2.4953 6 6 2.1383 -0.6414 -3.7256 7 1 2.6909 -1.5642 -3.6285 8 6 1.8920 -0.1136 -4.9754 9 7 1.2186 1.0098 -5.0936 10 14 2.5148 -0.9943 -6.5004 11 1 1.9230 -2.3549 -6.5627 12 1 2.1221 -0.2274 -7.7099 13 1 3.9948 -1.1005 -6.4411 14 7 2.0182 -0.6905 1.1963 15 6 1.7722 -1.9857 1.5416 16 6 2.4098 -2.2120 2.7130 17 7 3.0295 -1.0889 3.0781 18 6 2.8103 -0.1596 2.1738 19 6 3.3294 1.2224 2.2106 20 7 3.0371 2.0543 1.2504 21 7 4.1237 1.6330 3.2610 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6054 -1.7199 -1.2950 26 1 3.1263 -0.7995 -1.2053 27 1 2.0699 1.0673 -2.4494 28 1 0.5490 0.1469 -2.5390 29 1 1.0457 1.3813 -5.9728 30 1 1.1799 -2.6970 0.9852 31 1 2.4160 -3.1435 3.2595 32 1 3.3783 2.9619 1.2744 33 1 4.3409 1.0141 3.9757 34 1 4.4650 2.5407 3.2851 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:44 Heat of formation + Delta-G solvation = 67.804793 kcal Electronic energy + Delta-G solvation = -16519.191970 eV Core-core repulsion = 13873.826657 eV Total energy + Delta-G solvation = -2645.365314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.90698 -36.97452 -36.15794 -33.12647 -31.34010 -30.75466 -29.34384 -28.63079 -25.35619 -23.67573 -22.57427 -21.32982 -19.72825 -19.02303 -17.23283 -16.81811 -16.41817 -15.81214 -15.18421 -14.47612 -14.30490 -13.73447 -13.60463 -13.19419 -12.87943 -12.51412 -12.20535 -12.12565 -11.41983 -11.22328 -10.86152 -10.69738 -10.64591 -10.08472 -9.89836 -9.66533 -9.29111 -9.23767 -8.97394 -8.76251 -8.35168 -8.10691 -6.01319 -4.03698 1.64268 2.79472 2.88711 3.32778 3.37154 3.39825 3.59580 3.79670 4.24046 4.45146 5.11857 5.18725 5.34615 5.50611 5.53334 5.60873 5.78879 5.94258 6.09052 6.27158 6.42237 6.45095 6.61400 6.76688 6.88200 6.94090 7.02456 7.37559 7.64166 7.65143 7.78093 7.97553 8.07834 8.39694 8.43489 9.02185 9.60113 11.09838 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.005724 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.623816 B = 4890.506926 C = 5190.351711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 H 0.151 0.849 4 C -0.111 4.111 5 C 0.027 3.973 6 C -0.522 4.522 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.398 5.398 15 C -0.026 4.026 16 C -0.038 4.038 17 N -0.471 5.471 18 C 0.208 3.792 19 C 0.507 3.493 20 N -0.754 5.754 21 N -0.876 5.876 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.261 0.739 30 H 0.177 0.823 31 H 0.172 0.828 32 H 0.340 0.660 33 H 0.403 0.597 34 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.694 -1.242 15.415 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.002 4.002 3 H 0.168 0.832 4 C -0.150 4.150 5 C -0.010 4.010 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.203 1.203 14 N -0.077 5.077 15 C -0.166 4.166 16 C -0.190 4.190 17 N -0.192 5.192 18 C -0.051 4.051 19 C 0.225 3.775 20 N -0.392 5.392 21 N -0.429 5.429 22 H 0.107 0.893 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.194 0.806 31 H 0.189 0.811 32 H 0.158 0.842 33 H 0.233 0.767 34 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.414 -1.013 14.912 15.013 hybrid contribution 0.655 -0.050 -0.728 0.980 sum 2.069 -1.062 14.184 14.374 Atomic orbital electron populations 1.22134 0.93914 1.02251 1.02897 1.22667 0.95173 1.00913 0.81493 0.83210 1.21990 1.00099 0.99143 0.93743 1.19090 0.96959 0.95309 0.89658 1.21168 1.35271 1.08483 0.91101 0.92835 1.24993 0.95219 0.94994 0.99072 1.69949 1.40228 1.19386 1.23757 0.86662 0.79312 0.79683 0.82371 1.20240 1.21247 1.20273 1.45873 1.33945 1.09617 1.18230 1.22915 1.06574 0.87148 0.99951 1.22201 1.02366 0.97680 0.96778 1.70055 1.22884 1.00072 1.26198 1.20250 1.01928 0.93107 0.89805 1.18818 0.85875 0.88787 0.84040 1.69774 1.34160 1.09407 1.25829 1.43406 1.56608 1.16634 1.26283 0.89341 0.92687 0.93155 0.93092 0.92906 0.96078 0.95978 0.92911 0.80607 0.81094 0.84223 0.76750 0.77091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.01 37.16 0.33 -2.17 16 2 C 0.10 1.76 2.97 -67.93 -0.20 1.56 16 3 H 0.15 2.90 5.07 -51.93 -0.26 2.63 16 4 C -0.11 -2.32 4.63 -26.74 -0.12 -2.45 16 5 C 0.03 0.70 4.73 -27.88 -0.13 0.56 16 6 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.40 -6.59 2.63 -107.31 -0.28 -6.87 16 15 C -0.03 -0.37 10.69 -16.63 -0.18 -0.55 16 16 C -0.04 -0.52 11.84 -17.94 -0.21 -0.73 16 17 N -0.47 -7.29 10.95 -11.24 -0.12 -7.41 16 18 C 0.21 3.40 7.80 -154.60 -1.21 2.20 16 19 C 0.51 7.41 8.13 -154.23 -1.25 6.16 16 20 N -0.75 -11.67 11.08 32.48 0.36 -11.31 16 21 N -0.88 -9.09 9.03 32.43 0.29 -8.80 16 22 H 0.09 1.54 6.56 -51.93 -0.34 1.20 16 23 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 6.56 -51.93 -0.34 0.23 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 31 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 32 H 0.34 4.48 8.81 -40.82 -0.36 4.12 16 33 H 0.40 3.92 8.59 -40.82 -0.35 3.57 16 34 H 0.40 3.06 8.84 -40.82 -0.36 2.70 16 LS Contribution 289.27 15.07 4.36 4.36 Total: -1.00 -31.72 289.27 -7.57 -39.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -4.50 Total: 8.92 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.38 Total: -8.90 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.98 Total: -60.31 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.72 -7.57 -39.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.093 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds