Wall clock time and date at job start Sun Mar 29 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47417 * 2 1 4 4 C 1.53006 * 109.47378 * 119.99902 * 2 1 3 5 5 C 1.53000 * 109.46769 * 295.00107 * 4 2 1 6 6 C 1.50707 * 109.46783 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99591 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47384 * 59.99721 * 10 8 6 12 12 H 1.48503 * 109.47295 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47250 * 299.99958 * 10 8 6 14 14 N 1.46501 * 109.47192 * 239.99704 * 2 1 3 15 15 C 1.36292 * 126.49193 * 299.34174 * 14 2 1 16 16 C 1.35273 * 107.05123 * 180.29127 * 15 14 2 17 17 N 1.33358 * 108.37696 * 359.73765 * 16 15 14 18 18 C 1.31501 * 109.23235 * 359.97438 * 17 16 15 19 19 C 1.47674 * 125.84048 * 180.02562 * 18 17 16 20 20 N 1.30378 * 120.00381 * 93.65061 * 19 18 17 21 21 N 1.37949 * 119.99927 * 273.64638 * 19 18 17 22 22 H 1.09002 * 109.47105 * 300.00082 * 1 2 3 23 23 H 1.09000 * 109.47500 * 60.00089 * 1 2 3 24 24 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46527 * 55.00106 * 4 2 1 26 26 H 1.08999 * 109.47013 * 174.99738 * 4 2 1 27 27 H 1.09004 * 109.47104 * 299.99339 * 5 4 2 28 28 H 1.08994 * 109.47230 * 59.99826 * 5 4 2 29 29 H 0.96994 * 120.00181 * 180.02562 * 9 8 6 30 30 H 1.08002 * 126.46799 * 0.03116 * 15 14 2 31 31 H 1.08004 * 125.80720 * 179.71567 * 16 15 14 32 32 H 0.97004 * 119.99438 * 354.48778 * 20 19 18 33 33 H 0.96996 * 120.00210 * 180.02562 * 21 19 18 34 34 H 0.97007 * 119.99657 * 359.71966 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 1 2.6909 -1.5639 3.6287 8 6 1.8919 -0.1132 4.9754 9 7 1.2185 1.0103 5.0936 10 14 2.5147 -0.9936 6.5006 11 1 3.9946 -1.0998 6.4413 12 1 2.1219 -0.2266 7.7100 13 1 1.9230 -2.3543 6.5630 14 7 2.0183 -0.6907 -1.1961 15 6 1.7823 -1.9894 -1.5353 16 6 2.4209 -2.2160 -2.7061 17 7 3.0271 -1.0884 -3.0794 18 6 2.7934 -0.1540 -2.1840 19 6 3.2899 1.2358 -2.2349 20 7 2.5512 2.1732 -2.7596 21 7 4.5353 1.5424 -1.7270 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7197 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 2.0699 1.0676 2.4494 28 1 0.5490 0.1472 2.5389 29 1 1.0455 1.3819 5.9727 30 1 1.1994 -2.7040 -0.9731 31 1 2.4373 -3.1511 -3.2463 32 1 1.7111 1.9458 -3.1882 33 1 4.8613 2.4553 -1.7600 34 1 5.0833 0.8456 -1.3328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:45 Heat of formation + Delta-G solvation = 63.759809 kcal Electronic energy + Delta-G solvation = -16509.356902 eV Core-core repulsion = 13863.816185 eV Total energy + Delta-G solvation = -2645.540717 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.02651 -36.70644 -36.40094 -33.24618 -31.51383 -31.21544 -29.22316 -28.83333 -25.55532 -23.51143 -22.61706 -21.48482 -19.99284 -19.38451 -17.85328 -16.80860 -16.16804 -15.47732 -14.81693 -14.66215 -14.54318 -14.26768 -14.06745 -13.44413 -12.98102 -12.51323 -12.30420 -12.20069 -11.61078 -11.40712 -10.96970 -10.80364 -10.75187 -10.10997 -10.04061 -9.76885 -9.70526 -9.45395 -9.15902 -8.53277 -8.48281 -8.34683 -6.13846 -4.17520 1.97275 2.25132 2.93113 3.11265 3.24746 3.30054 3.31989 3.69588 4.34408 4.39926 4.81814 4.96563 5.17096 5.22515 5.37404 5.44737 5.62302 5.84285 5.88712 5.92259 6.17358 6.22929 6.36865 6.47044 6.73282 6.79825 7.17267 7.24074 7.45528 7.54897 7.55813 7.82777 8.03847 8.23606 8.41970 8.88002 9.47592 10.97218 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.005754 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.995349 B = 4865.312593 C = 5104.371550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.098 0.902 4 C -0.114 4.114 5 C 0.026 3.974 6 C -0.526 4.526 7 H 0.055 0.945 8 C 0.060 3.940 9 N -0.893 5.893 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 N -0.419 5.419 15 C -0.027 4.027 16 C -0.040 4.040 17 N -0.462 5.462 18 C 0.153 3.847 19 C 0.518 3.482 20 N -0.753 5.753 21 N -0.831 5.831 22 H 0.091 0.909 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.176 0.824 31 H 0.171 0.829 32 H 0.349 0.651 33 H 0.409 0.591 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -3.076 -11.384 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.116 0.884 4 C -0.152 4.152 5 C -0.011 4.011 6 C -0.564 4.564 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.532 5.532 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 N -0.099 5.099 15 C -0.165 4.165 16 C -0.192 4.192 17 N -0.182 5.182 18 C -0.111 4.111 19 C 0.229 3.771 20 N -0.386 5.386 21 N -0.382 5.382 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.194 0.806 31 H 0.189 0.811 32 H 0.165 0.835 33 H 0.240 0.760 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 1.922 -1.747 -11.924 12.203 hybrid contribution -0.416 -1.520 1.714 2.328 sum 1.506 -3.267 -10.210 10.825 Atomic orbital electron populations 1.22172 0.93072 1.03062 1.03257 1.21997 0.95897 0.97270 0.82857 0.88410 1.22050 1.00331 0.99663 0.93156 1.19118 0.97157 0.95093 0.89781 1.21112 1.35694 1.08643 0.90940 0.92689 1.25002 0.95063 0.94959 0.99200 1.69937 1.39919 1.19318 1.24020 0.86629 0.79336 0.79688 0.82211 1.20181 1.21165 1.20170 1.46029 1.36339 1.09802 1.17732 1.22854 1.06857 0.86668 1.00140 1.22278 1.02463 0.97758 0.96666 1.70264 1.22058 0.99438 1.26429 1.22568 1.02570 0.96266 0.89671 1.18395 0.86903 0.82498 0.89310 1.69305 1.14345 1.32970 1.21983 1.42078 1.15387 1.13933 1.66794 0.89026 0.92866 0.91879 0.92266 0.92520 0.96371 0.95823 0.92740 0.80638 0.81149 0.83504 0.75966 0.76279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.01 37.16 0.33 -1.97 16 2 C 0.12 1.93 3.02 -67.93 -0.20 1.72 16 3 H 0.10 1.65 7.36 -51.93 -0.38 1.27 16 4 C -0.11 -2.12 4.62 -26.73 -0.12 -2.25 16 5 C 0.03 0.61 4.73 -27.88 -0.13 0.48 16 6 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 7 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 10 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 14 N -0.42 -6.26 2.63 -107.30 -0.28 -6.55 16 15 C -0.03 -0.37 10.69 -16.63 -0.18 -0.55 16 16 C -0.04 -0.55 11.84 -17.95 -0.21 -0.76 16 17 N -0.46 -7.37 11.26 -11.24 -0.13 -7.49 16 18 C 0.15 2.37 7.51 -154.60 -1.16 1.21 16 19 C 0.52 7.62 7.22 -154.22 -1.11 6.51 16 20 N -0.75 -11.53 14.13 32.49 0.46 -11.07 16 21 N -0.83 -9.82 9.03 32.44 0.29 -9.53 16 22 H 0.09 1.44 6.57 -51.93 -0.34 1.10 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.85 7.97 -51.93 -0.41 0.44 16 25 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.58 6.56 -51.93 -0.34 0.24 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 31 H 0.17 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.35 5.15 8.76 -40.82 -0.36 4.80 16 33 H 0.41 4.15 8.95 -40.82 -0.37 3.79 16 34 H 0.41 4.30 8.86 -40.82 -0.36 3.94 16 LS Contribution 294.10 15.07 4.43 4.43 Total: -1.00 -30.52 294.10 -7.35 -37.87 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -4.64 Total: 9.89 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -3.20 Total: -8.44 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 1.08 Total: -59.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.52 -7.35 -37.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.632 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds