Wall clock time and date at job start Sun Mar 29 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47417 * 2 1 4 4 C 1.53006 * 109.47378 * 119.99902 * 2 1 3 5 5 C 1.53000 * 109.46769 * 295.00107 * 4 2 1 6 6 C 1.50707 * 109.46783 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99591 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00055 * 180.02562 * 6 5 4 9 9 N 1.31519 * 119.99855 * 359.97438 * 8 6 5 10 10 Si 1.86790 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47384 * 59.99721 * 10 8 6 12 12 H 1.48503 * 109.47295 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47250 * 299.99958 * 10 8 6 14 14 N 1.46501 * 109.47192 * 239.99704 * 2 1 3 15 15 C 1.36292 * 126.49193 * 299.34174 * 14 2 1 16 16 C 1.35273 * 107.05123 * 180.29127 * 15 14 2 17 17 N 1.33358 * 108.37696 * 359.73765 * 16 15 14 18 18 C 1.31501 * 109.23235 * 359.97438 * 17 16 15 19 19 C 1.47674 * 125.84048 * 180.02562 * 18 17 16 20 20 N 1.30378 * 120.00381 * 93.65061 * 19 18 17 21 21 N 1.37949 * 119.99927 * 273.64638 * 19 18 17 22 22 H 1.09002 * 109.47105 * 300.00082 * 1 2 3 23 23 H 1.09000 * 109.47500 * 60.00089 * 1 2 3 24 24 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.46527 * 55.00106 * 4 2 1 26 26 H 1.08999 * 109.47013 * 174.99738 * 4 2 1 27 27 H 1.09004 * 109.47104 * 299.99339 * 5 4 2 28 28 H 1.08994 * 109.47230 * 59.99826 * 5 4 2 29 29 H 0.96994 * 120.00181 * 180.02562 * 9 8 6 30 30 H 1.08002 * 126.46799 * 0.03116 * 15 14 2 31 31 H 1.08004 * 125.80720 * 179.71567 * 16 15 14 32 32 H 0.97004 * 119.99438 * 354.48778 * 20 19 18 33 33 H 0.96996 * 120.00210 * 180.02562 * 21 19 18 34 34 H 0.97007 * 119.99657 * 359.71966 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0690 2.4953 6 6 2.1382 -0.6411 3.7258 7 1 2.6909 -1.5639 3.6287 8 6 1.8919 -0.1132 4.9754 9 7 1.2185 1.0103 5.0936 10 14 2.5147 -0.9936 6.5006 11 1 3.9946 -1.0998 6.4413 12 1 2.1219 -0.2266 7.7100 13 1 1.9230 -2.3543 6.5630 14 7 2.0183 -0.6907 -1.1961 15 6 1.7823 -1.9894 -1.5353 16 6 2.4209 -2.2160 -2.7061 17 7 3.0271 -1.0884 -3.0794 18 6 2.7934 -0.1540 -2.1840 19 6 3.2899 1.2358 -2.2349 20 7 2.5512 2.1732 -2.7596 21 7 4.5353 1.5424 -1.7270 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7197 1.2951 26 1 3.1263 -0.7995 1.2055 27 1 2.0699 1.0676 2.4494 28 1 0.5490 0.1472 2.5389 29 1 1.0455 1.3819 5.9727 30 1 1.1994 -2.7040 -0.9731 31 1 2.4373 -3.1511 -3.2463 32 1 1.7111 1.9458 -3.1882 33 1 4.8613 2.4553 -1.7600 34 1 5.0833 0.8456 -1.3328 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484030.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:45 Heat of formation + Delta-G solvation = 43.855807 kcal Electronic energy + Delta-G solvation = -16510.220005 eV Core-core repulsion = 13863.816185 eV Total energy + Delta-G solvation = -2646.403819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.133 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.16011 -37.83493 -37.76127 -35.12968 -32.78245 -32.56599 -30.44784 -30.19480 -27.26632 -24.92933 -23.87349 -22.87088 -21.28793 -20.60598 -19.13628 -18.38593 -17.59362 -16.67317 -16.45066 -15.98756 -15.95396 -15.42771 -15.25569 -14.65043 -14.41778 -14.10432 -13.87824 -13.34031 -13.24411 -12.93207 -12.63073 -12.53627 -12.24878 -11.73829 -11.66151 -11.34430 -11.09670 -10.84743 -10.62005 -10.55271 -9.59106 -9.43391 -8.22251 -6.32860 0.84712 1.11283 1.40936 1.42072 1.50197 1.78492 2.01726 2.39678 2.62854 3.12128 3.32252 3.52082 3.86719 3.91045 4.05385 4.44258 4.50170 4.56056 4.69198 4.72369 4.85272 4.87979 5.02764 5.07022 5.30075 5.46285 5.65124 5.74109 5.79708 6.00225 6.20471 6.23439 6.56933 6.82852 6.93074 7.35482 7.36684 8.88885 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.030428 B = 0.005754 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.995349 B = 4865.312593 C = 5104.371550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.085 0.915 4 C -0.097 4.097 5 C 0.031 3.969 6 C -0.544 4.544 7 H 0.059 0.941 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.266 1.266 14 N -0.421 5.421 15 C -0.028 4.028 16 C -0.044 4.044 17 N -0.483 5.483 18 C 0.140 3.860 19 C 0.511 3.489 20 N -0.769 5.769 21 N -0.820 5.820 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.050 0.950 27 H -0.009 1.009 28 H 0.011 0.989 29 H 0.264 0.736 30 H 0.202 0.798 31 H 0.200 0.800 32 H 0.348 0.652 33 H 0.417 0.583 34 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.835 -4.681 -11.542 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.103 0.897 4 C -0.135 4.135 5 C -0.006 4.006 6 C -0.582 4.582 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.191 1.191 14 N -0.102 5.102 15 C -0.165 4.165 16 C -0.194 4.194 17 N -0.203 5.203 18 C -0.123 4.123 19 C 0.223 3.777 20 N -0.404 5.404 21 N -0.372 5.372 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.217 0.783 32 H 0.164 0.836 33 H 0.250 0.750 34 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.225 -3.369 -12.093 12.749 hybrid contribution -0.484 -1.042 1.718 2.067 sum 1.742 -4.411 -10.375 11.408 Atomic orbital electron populations 1.22107 0.91907 1.03976 1.03014 1.21642 0.96632 0.96233 0.82259 0.89706 1.21750 0.99963 0.99497 0.92268 1.18967 0.96006 0.94214 0.91456 1.21587 1.35439 1.08914 0.92246 0.92268 1.25875 0.95270 0.95659 1.02525 1.70062 1.41295 1.20869 1.24738 0.85587 0.78992 0.78766 0.78255 1.19436 1.21018 1.19108 1.45921 1.36606 1.10426 1.17272 1.23360 1.06626 0.86225 1.00289 1.22816 1.01641 0.98122 0.96841 1.70275 1.22820 1.00335 1.26851 1.22676 1.03074 0.96565 0.89974 1.18592 0.87507 0.82432 0.89205 1.69331 1.14723 1.33260 1.23039 1.42079 1.14531 1.14681 1.65921 0.90631 0.91698 0.90386 0.91233 0.93093 0.99038 0.97079 0.92727 0.78138 0.78309 0.83589 0.75035 0.75524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 9.01 71.98 0.65 -3.61 16 2 C 0.13 4.16 3.02 44.99 0.14 4.30 16 3 H 0.08 2.86 7.36 -2.38 -0.02 2.85 16 4 C -0.10 -3.52 4.62 30.60 0.14 -3.38 16 5 C 0.03 1.49 4.73 29.85 0.14 1.63 16 6 C -0.54 -29.01 9.11 25.60 0.23 -28.77 16 7 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 8 C 0.01 0.28 5.46 84.65 0.46 0.74 16 9 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 10 Si 0.96 42.37 29.54 68.60 2.03 44.39 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 13 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 14 N -0.42 -11.92 2.63 -493.37 -1.30 -13.22 16 15 C -0.03 -0.69 10.69 83.32 0.89 0.20 16 16 C -0.04 -1.08 11.84 83.78 0.99 -0.09 16 17 N -0.48 -14.59 11.26 -189.46 -2.13 -16.72 16 18 C 0.14 4.18 7.51 136.43 1.02 5.20 16 19 C 0.51 14.76 7.22 136.29 0.98 15.75 16 20 N -0.77 -23.33 14.13 -51.14 -0.72 -24.05 16 21 N -0.82 -18.84 9.03 -51.29 -0.46 -19.30 16 22 H 0.07 2.37 6.57 -2.39 -0.02 2.36 16 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.08 1.93 7.97 -2.39 -0.02 1.91 16 25 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 28 H 0.01 0.55 6.56 -2.39 -0.02 0.53 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.20 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.35 10.24 8.76 -92.71 -0.81 9.42 16 33 H 0.42 8.19 8.95 -92.71 -0.83 7.36 16 34 H 0.41 8.40 8.86 -92.70 -0.82 7.58 16 Total: -1.00 -64.34 294.10 2.02 -62.32 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: -1.33 Total: 28.39 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.65 Total: -8.03 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -4.33 Total: -127.08 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -64.34 2.02 -62.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484030.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.180 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds