Wall clock time and date at job start Sun Mar 29 2020 22:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47003 * 2 1 4 4 C 1.53002 * 109.47528 * 120.00237 * 2 1 3 5 5 C 1.53001 * 109.46762 * 295.00420 * 4 2 1 6 6 C 1.50703 * 109.46853 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00178 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99779 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00328 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47380 * 89.99145 * 10 8 6 12 12 H 1.48498 * 109.47217 * 209.99343 * 10 8 6 13 13 H 1.48502 * 109.46623 * 329.99399 * 10 8 6 14 14 N 1.46502 * 109.47531 * 240.00495 * 2 1 3 15 15 C 1.36339 * 125.63218 * 299.97848 * 14 2 1 16 16 C 1.34858 * 108.21971 * 180.02562 * 15 14 2 17 17 C 1.40892 * 107.41188 * 359.76279 * 16 15 14 18 18 C 1.34853 * 107.41931 * 0.38500 * 17 16 15 19 19 C 1.50697 * 125.88946 * 179.88573 * 18 17 16 20 20 C 1.52997 * 109.47466 * 84.68560 * 19 18 17 21 21 N 1.46899 * 109.47254 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47162 * 59.99412 * 1 2 3 23 23 H 1.09001 * 109.46555 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46973 * 299.99732 * 1 2 3 25 25 H 1.08999 * 109.46443 * 55.00194 * 4 2 1 26 26 H 1.08996 * 109.47184 * 175.00327 * 4 2 1 27 27 H 1.08994 * 109.47107 * 299.99475 * 5 4 2 28 28 H 1.08996 * 109.47347 * 60.00007 * 5 4 2 29 29 H 0.96996 * 119.99815 * 180.02562 * 9 8 6 30 30 H 1.07999 * 125.89563 * 0.04934 * 15 14 2 31 31 H 1.07994 * 126.29246 * 180.02562 * 16 15 14 32 32 H 1.08003 * 126.28974 * 180.23742 * 17 16 15 33 33 H 1.09002 * 109.47120 * 324.68313 * 19 18 17 34 34 H 1.08998 * 109.46862 * 204.69115 * 19 18 17 35 35 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 36 36 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 37 37 H 1.00908 * 110.99847 * 56.04959 * 21 20 19 38 38 H 1.00900 * 111.00464 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1372 -0.6419 3.7258 7 1 2.6893 -1.5651 3.6287 8 6 1.8906 -0.1143 4.9755 9 7 1.2179 1.0096 5.0937 10 14 2.5121 -0.9956 6.5007 11 1 3.8735 -0.5058 6.8353 12 1 1.5953 -0.7247 7.6370 13 1 2.5616 -2.4571 6.2421 14 7 2.0184 -0.6905 -1.1962 15 6 1.7612 -1.9885 -1.5248 16 6 2.3808 -2.2588 -2.6917 17 6 3.0403 -1.0829 -3.1011 18 6 2.8057 -0.1415 -2.1646 19 6 3.3195 1.2750 -2.1877 20 6 2.3788 2.1453 -3.0235 21 7 2.8794 3.5261 -3.0455 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6055 -1.7198 1.2950 26 1 3.1264 -0.7994 1.2055 27 1 2.0698 1.0673 2.4494 28 1 0.5490 0.1470 2.5390 29 1 1.0448 1.3810 5.9728 30 1 1.1640 -2.6807 -0.9500 31 1 2.3697 -3.2017 -3.2179 32 1 3.6279 -0.9591 -3.9988 33 1 4.3170 1.2925 -2.6269 34 1 3.3641 1.6619 -1.1697 35 1 1.3814 2.1277 -2.5842 36 1 2.3344 1.7582 -4.0415 37 1 3.8277 3.5615 -3.3886 38 1 2.2751 4.1213 -3.5920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:59 Heat of formation + Delta-G solvation = 21.529546 kcal Electronic energy + Delta-G solvation = -16688.356582 eV Core-core repulsion = 14144.524967 eV Total energy + Delta-G solvation = -2543.831615 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.05167 -35.79361 -35.45948 -32.89671 -30.85366 -30.27638 -28.35354 -26.36829 -25.34025 -22.70422 -22.30453 -20.81657 -19.58970 -18.31132 -16.97967 -16.07933 -15.77448 -14.93493 -14.64148 -14.45319 -14.28036 -13.83730 -13.36772 -12.95551 -12.63703 -12.22883 -12.16990 -11.91416 -11.79091 -11.54946 -11.39446 -11.21382 -11.01624 -10.84636 -10.60006 -10.49181 -9.83550 -9.53492 -9.18721 -8.83561 -8.39556 -8.19630 -7.68534 -6.05336 -4.07964 2.59462 3.29601 3.30599 3.33923 3.36105 3.39983 4.41741 4.43318 5.01797 5.07598 5.17160 5.23031 5.30879 5.43119 5.47619 5.59385 5.62959 5.79030 5.79624 5.97554 6.03516 6.07455 6.18883 6.39001 6.45029 6.58167 6.61659 6.67881 6.93527 6.96605 7.27059 7.35982 7.57854 7.63537 7.70981 7.79421 7.92894 8.35222 8.98093 9.56554 11.05889 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.005504 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.238542 B = 5086.091435 C = 5623.745135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.122 3.878 3 H 0.095 0.905 4 C -0.116 4.116 5 C 0.025 3.975 6 C -0.522 4.522 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 N -0.425 5.425 15 C -0.004 4.004 16 C -0.213 4.213 17 C -0.206 4.206 18 C 0.014 3.986 19 C -0.050 4.050 20 C 0.069 3.931 21 N -0.852 5.852 22 H 0.050 0.950 23 H 0.059 0.941 24 H 0.085 0.915 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.017 0.983 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.155 0.845 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.029 0.971 37 H 0.339 0.661 38 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 0.200 -16.089 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.113 0.887 4 C -0.154 4.154 5 C -0.013 4.013 6 C -0.560 4.560 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.206 1.206 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.099 5.099 15 C -0.136 4.136 16 C -0.238 4.238 17 C -0.231 4.231 18 C -0.099 4.099 19 C -0.088 4.088 20 C -0.062 4.062 21 N -0.381 5.381 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.173 0.827 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.151 0.849 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.687 0.490 -14.843 14.867 hybrid contribution 0.396 -0.694 -0.114 0.807 sum 1.084 -0.204 -14.957 14.997 Atomic orbital electron populations 1.22148 0.93870 1.02697 1.02691 1.21783 0.95209 0.97328 0.83553 0.88717 1.22029 1.00276 0.99554 0.93512 1.19124 0.97049 0.95100 0.90012 1.21193 1.35289 1.08514 0.91029 0.92700 1.25003 0.95150 0.95000 0.99151 1.69956 1.40234 1.19437 1.23751 0.86586 0.78712 0.80061 0.82625 1.20608 1.21162 1.19862 1.44513 1.37638 1.09909 1.17843 1.21686 1.06363 0.86390 0.99123 1.20732 1.05738 0.98951 0.98356 1.20519 1.07990 0.93782 1.00779 1.20134 1.01753 0.95863 0.92183 1.20025 0.98291 0.88677 1.01827 1.21756 0.98846 0.87591 0.98027 1.58691 1.07092 1.09629 1.62718 0.93104 0.92238 0.89591 0.92607 0.92681 0.96437 0.95921 0.92915 0.82717 0.85420 0.85678 0.90428 0.90253 0.91138 0.95257 0.84867 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.99 37.16 0.33 -2.13 16 2 C 0.12 2.09 2.97 -67.93 -0.20 1.89 16 3 H 0.09 1.64 6.52 -51.93 -0.34 1.31 16 4 C -0.12 -2.36 4.61 -26.73 -0.12 -2.48 16 5 C 0.02 0.61 4.73 -27.88 -0.13 0.48 16 6 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 7 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 14 N -0.43 -6.89 2.62 -105.47 -0.28 -7.17 16 15 C 0.00 -0.06 10.45 -16.75 -0.18 -0.24 16 16 C -0.21 -3.15 10.86 -39.78 -0.43 -3.59 16 17 C -0.21 -3.02 10.76 -39.78 -0.43 -3.45 16 18 C 0.01 0.21 6.14 -81.79 -0.50 -0.29 16 19 C -0.05 -0.65 5.63 -27.89 -0.16 -0.80 16 20 C 0.07 0.79 6.77 -3.83 -0.03 0.76 16 21 N -0.85 -8.56 9.62 -10.37 -0.10 -8.66 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 24 H 0.09 1.45 6.56 -51.93 -0.34 1.11 16 25 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 26 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.58 6.56 -51.93 -0.34 0.24 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.16 6.85 -51.93 -0.36 0.80 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.34 2.85 8.99 -39.29 -0.35 2.50 16 38 H 0.34 2.80 9.08 -39.29 -0.36 2.44 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -30.17 312.50 -8.47 -38.63 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.26 Total: 4.91 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: -2.25 Total: -23.21 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.36 Total: -41.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.17 -8.47 -38.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.163 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds