Wall clock time and date at job start Sun Mar 29 2020 22:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47003 * 2 1 4 4 C 1.53002 * 109.47528 * 120.00237 * 2 1 3 5 5 C 1.53001 * 109.46762 * 295.00420 * 4 2 1 6 6 C 1.50703 * 109.46853 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00178 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99779 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00328 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47380 * 89.99145 * 10 8 6 12 12 H 1.48498 * 109.47217 * 209.99343 * 10 8 6 13 13 H 1.48502 * 109.46623 * 329.99399 * 10 8 6 14 14 N 1.46502 * 109.47531 * 240.00495 * 2 1 3 15 15 C 1.36339 * 125.63218 * 299.97848 * 14 2 1 16 16 C 1.34858 * 108.21971 * 180.02562 * 15 14 2 17 17 C 1.40892 * 107.41188 * 359.76279 * 16 15 14 18 18 C 1.34853 * 107.41931 * 0.38500 * 17 16 15 19 19 C 1.50697 * 125.88946 * 179.88573 * 18 17 16 20 20 C 1.52997 * 109.47466 * 84.68560 * 19 18 17 21 21 N 1.46899 * 109.47254 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47162 * 59.99412 * 1 2 3 23 23 H 1.09001 * 109.46555 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46973 * 299.99732 * 1 2 3 25 25 H 1.08999 * 109.46443 * 55.00194 * 4 2 1 26 26 H 1.08996 * 109.47184 * 175.00327 * 4 2 1 27 27 H 1.08994 * 109.47107 * 299.99475 * 5 4 2 28 28 H 1.08996 * 109.47347 * 60.00007 * 5 4 2 29 29 H 0.96996 * 119.99815 * 180.02562 * 9 8 6 30 30 H 1.07999 * 125.89563 * 0.04934 * 15 14 2 31 31 H 1.07994 * 126.29246 * 180.02562 * 16 15 14 32 32 H 1.08003 * 126.28974 * 180.23742 * 17 16 15 33 33 H 1.09002 * 109.47120 * 324.68313 * 19 18 17 34 34 H 1.08998 * 109.46862 * 204.69115 * 19 18 17 35 35 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 36 36 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 37 37 H 1.00908 * 110.99847 * 56.04959 * 21 20 19 38 38 H 1.00900 * 111.00464 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0688 2.4953 6 6 2.1372 -0.6419 3.7258 7 1 2.6893 -1.5651 3.6287 8 6 1.8906 -0.1143 4.9755 9 7 1.2179 1.0096 5.0937 10 14 2.5121 -0.9956 6.5007 11 1 3.8735 -0.5058 6.8353 12 1 1.5953 -0.7247 7.6370 13 1 2.5616 -2.4571 6.2421 14 7 2.0184 -0.6905 -1.1962 15 6 1.7612 -1.9885 -1.5248 16 6 2.3808 -2.2588 -2.6917 17 6 3.0403 -1.0829 -3.1011 18 6 2.8057 -0.1415 -2.1646 19 6 3.3195 1.2750 -2.1877 20 6 2.3788 2.1453 -3.0235 21 7 2.8794 3.5261 -3.0455 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6055 -1.7198 1.2950 26 1 3.1264 -0.7994 1.2055 27 1 2.0698 1.0673 2.4494 28 1 0.5490 0.1470 2.5390 29 1 1.0448 1.3810 5.9728 30 1 1.1640 -2.6807 -0.9500 31 1 2.3697 -3.2017 -3.2179 32 1 3.6279 -0.9591 -3.9988 33 1 4.3170 1.2925 -2.6269 34 1 3.3641 1.6619 -1.1697 35 1 1.3814 2.1277 -2.5842 36 1 2.3344 1.7582 -4.0415 37 1 3.8277 3.5615 -3.3886 38 1 2.2751 4.1213 -3.5920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:59 Heat of formation + Delta-G solvation = 3.813105 kcal Electronic energy + Delta-G solvation = -16689.124825 eV Core-core repulsion = 14144.524967 eV Total energy + Delta-G solvation = -2544.599858 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.24427 -37.32385 -36.41601 -34.89602 -31.99738 -31.82638 -29.78179 -27.42287 -27.20351 -24.37702 -23.28130 -22.33024 -20.91810 -19.59088 -18.64476 -17.71340 -16.69654 -16.53266 -16.07012 -15.76114 -15.64887 -15.02155 -14.62154 -14.46292 -13.98653 -13.89392 -13.60308 -13.20174 -12.99315 -12.95099 -12.86228 -12.59925 -12.57207 -12.44554 -12.09244 -12.00581 -11.64739 -11.47505 -11.23465 -10.56550 -9.63548 -9.42742 -8.84100 -8.22578 -6.33345 1.38912 1.39636 1.41535 1.50883 2.08565 2.18012 2.39774 3.11030 3.54806 3.67698 3.98492 4.04910 4.14025 4.19473 4.25910 4.39724 4.56767 4.60423 4.65145 4.72595 4.78048 4.80308 4.94253 5.00823 5.05607 5.13961 5.14782 5.44919 5.46467 5.51543 5.66999 5.79980 6.20003 6.20544 6.23748 6.47334 6.56276 6.62810 6.81959 7.35809 8.88831 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026859 B = 0.005504 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.238542 B = 5086.091435 C = 5623.745135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.134 3.866 3 H 0.089 0.911 4 C -0.099 4.099 5 C 0.031 3.969 6 C -0.546 4.546 7 H 0.055 0.945 8 C 0.005 3.995 9 N -0.929 5.929 10 Si 0.961 3.039 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.265 1.265 14 N -0.435 5.435 15 C -0.025 4.025 16 C -0.214 4.214 17 C -0.210 4.210 18 C 0.002 3.998 19 C -0.047 4.047 20 C 0.078 3.922 21 N -0.860 5.860 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.042 0.958 27 H -0.007 1.007 28 H 0.010 0.990 29 H 0.265 0.735 30 H 0.164 0.836 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.350 0.650 38 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -0.559 -17.035 17.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.137 4.137 5 C -0.006 4.006 6 C -0.584 4.584 7 H 0.073 0.927 8 C -0.193 4.193 9 N -0.569 5.569 10 Si 0.786 3.214 11 H -0.199 1.199 12 H -0.205 1.205 13 H -0.189 1.189 14 N -0.110 5.110 15 C -0.155 4.155 16 C -0.238 4.238 17 C -0.234 4.234 18 C -0.111 4.111 19 C -0.085 4.085 20 C -0.053 4.053 21 N -0.392 5.392 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.011 0.989 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.164 0.836 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.215 -0.274 -15.817 15.866 hybrid contribution 0.258 -0.444 0.127 0.529 sum 1.473 -0.718 -15.690 15.775 Atomic orbital electron populations 1.22059 0.92754 1.03150 1.02701 1.21442 0.95961 0.96519 0.82850 0.89329 1.21743 0.99437 0.99229 0.93306 1.18972 0.95913 0.94237 0.91520 1.21625 1.35464 1.08811 0.92479 0.92705 1.25891 0.95216 0.95715 1.02506 1.70072 1.41281 1.20859 1.24705 0.85505 0.78269 0.79133 0.78514 1.19913 1.20496 1.18943 1.44442 1.38490 1.10335 1.17689 1.22013 1.07212 0.86342 0.99935 1.21069 1.04910 0.99852 0.97988 1.20843 1.07870 0.93436 1.01300 1.20558 1.01503 0.96912 0.92084 1.20049 0.99528 0.87885 1.01054 1.21583 0.97579 0.88135 0.98037 1.58637 1.08076 1.09040 1.63464 0.91417 0.91558 0.91150 0.92365 0.93874 0.98896 0.97131 0.92659 0.81879 0.83369 0.83568 0.88777 0.92362 0.92708 0.94132 0.83686 0.83400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.66 8.99 71.98 0.65 -4.01 16 2 C 0.13 4.62 2.97 44.99 0.13 4.75 16 3 H 0.09 3.15 6.52 -2.38 -0.02 3.14 16 4 C -0.10 -4.10 4.61 30.60 0.14 -3.96 16 5 C 0.03 1.60 4.73 29.85 0.14 1.74 16 6 C -0.55 -30.98 9.11 25.60 0.23 -30.75 16 7 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 8 C 0.01 0.29 5.46 84.65 0.46 0.75 16 9 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 10 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 14 N -0.43 -13.76 2.62 -487.61 -1.28 -15.03 16 15 C -0.02 -0.74 10.45 83.22 0.87 0.13 16 16 C -0.21 -5.86 10.86 22.14 0.24 -5.62 16 17 C -0.21 -5.68 10.76 22.14 0.24 -5.44 16 18 C 0.00 0.05 6.14 41.08 0.25 0.31 16 19 C -0.05 -1.17 5.63 29.85 0.17 -1.00 16 20 C 0.08 1.68 6.77 86.30 0.58 2.26 16 21 N -0.86 -16.08 9.62 -186.72 -1.80 -17.87 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 23 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 24 H 0.07 2.42 6.56 -2.39 -0.02 2.40 16 25 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.01 0.56 6.56 -2.39 -0.02 0.54 16 29 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.16 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 32 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.70 6.85 -2.39 -0.02 1.68 16 35 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.35 5.26 8.99 -89.69 -0.81 4.45 16 38 H 0.35 5.24 9.08 -89.69 -0.81 4.42 16 Total: -1.00 -63.72 312.50 2.77 -60.95 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -0.58 Total: 22.09 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 4.11 Total: -40.83 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -2.79 Total: -88.41 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.72 2.77 -60.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.768 kcal (2) G-P(sol) polarization free energy of solvation -63.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds