Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47031 * 2 1 4 4 C 1.53001 * 109.46911 * 240.00515 * 2 1 3 5 5 C 1.53006 * 109.47173 * 65.54075 * 4 2 1 6 6 C 1.50694 * 109.47206 * 174.62573 * 5 4 2 7 7 H 1.07996 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00142 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99739 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47030 * 269.99696 * 10 8 6 12 12 H 1.48497 * 109.47087 * 149.99943 * 10 8 6 13 13 H 1.48500 * 109.46968 * 29.99938 * 10 8 6 14 14 N 1.46897 * 109.47388 * 120.00905 * 2 1 3 15 15 C 1.48532 * 111.00086 * 179.60829 * 14 2 1 16 16 C 1.54940 * 103.22576 * 159.71696 * 15 14 2 17 17 C 1.54596 * 102.92317 * 322.58357 * 16 15 14 18 18 C 1.52998 * 110.30622 * 140.87736 * 17 16 15 19 19 C 1.47201 * 110.39159 * 263.00077 * 17 16 15 20 20 N 5.16674 * 114.63869 * 62.50827 * 2 1 3 21 21 C 1.47910 * 110.99468 * 297.00016 * 14 2 1 22 22 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46747 * 299.99420 * 1 2 3 24 24 H 1.08996 * 109.47258 * 59.99614 * 1 2 3 25 25 H 1.09003 * 109.47165 * 305.54647 * 4 2 1 26 26 H 1.09000 * 109.47177 * 185.54047 * 4 2 1 27 27 H 1.09001 * 109.46787 * 54.62451 * 5 4 2 28 28 H 1.09001 * 109.46792 * 294.62666 * 5 4 2 29 29 H 0.96997 * 119.99921 * 0.02562 * 9 8 6 30 30 H 1.08995 * 110.66173 * 278.15295 * 15 14 2 31 31 H 1.09000 * 110.66438 * 41.27853 * 15 14 2 32 32 H 1.09006 * 110.71969 * 204.22434 * 16 15 14 33 33 H 1.09001 * 110.72243 * 80.94733 * 16 15 14 34 34 H 1.09000 * 109.47146 * 304.27613 * 18 17 16 35 35 H 1.08997 * 109.47336 * 64.28278 * 18 17 16 36 36 H 1.09006 * 109.46615 * 184.28441 * 18 17 16 37 37 H 1.08999 * 109.91599 * 333.50858 * 21 14 2 38 38 H 1.09005 * 109.91503 * 94.60910 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6469 0.0762 -2.4946 6 6 2.2606 -0.5619 -3.7141 7 1 2.8704 -1.4473 -3.6112 8 6 2.0444 -0.0148 -4.9612 9 7 1.3022 1.0637 -5.0864 10 14 2.8057 -0.8054 -6.4727 11 1 4.1453 -0.2138 -6.7191 12 1 1.9337 -0.5635 -7.6501 13 1 2.9433 -2.2672 -6.2505 14 7 2.0198 -0.6927 1.1993 15 6 3.5045 -0.7207 1.2288 16 6 3.8246 -0.9783 2.7228 17 6 2.7392 -0.1568 3.4555 18 6 2.2325 -0.9201 4.6809 19 6 3.2725 1.1553 3.8565 20 7 3.6840 2.1679 4.1660 21 6 1.6054 0.0184 2.4283 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.5978 -1.7161 -1.3005 26 1 3.1255 -0.8079 -1.2012 27 1 2.0083 1.1001 -2.3995 28 1 0.5615 0.0818 -2.5948 29 1 0.9072 1.4744 -4.3014 30 1 3.8863 -1.5313 0.6082 31 1 3.9138 0.2370 0.9072 32 1 4.8202 -0.6117 2.9727 33 1 3.7319 -2.0382 2.9598 34 1 1.8750 -1.9031 4.3744 35 1 3.0449 -1.0362 5.3982 36 1 1.4163 -0.3646 5.1430 37 1 1.4592 1.0770 2.2134 38 1 0.6815 -0.4133 2.8134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = 6.776863 kcal Electronic energy + Delta-G solvation = -16750.575063 eV Core-core repulsion = 14206.103724 eV Total energy + Delta-G solvation = -2544.471340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97054 -36.85265 -35.23970 -33.31903 -31.39498 -30.00689 -27.89409 -26.48569 -24.58648 -22.85959 -21.95092 -21.25370 -19.48395 -17.44950 -16.72193 -15.79585 -15.00511 -14.53692 -14.33767 -13.88729 -13.71381 -13.60744 -13.42888 -13.16486 -12.82233 -12.58335 -12.25305 -12.12293 -12.04777 -11.59816 -11.35548 -11.23201 -11.10884 -11.01743 -10.93836 -10.69500 -10.26788 -10.10737 -9.79738 -9.66659 -8.50345 -8.34295 -8.28532 -6.33721 -4.02323 2.53144 2.56736 3.44778 3.48471 3.52517 3.64209 4.14063 4.28866 4.42012 4.56683 4.58648 5.10532 5.17826 5.24892 5.36493 5.43080 5.45562 5.48137 5.57879 5.62085 5.73685 5.80481 5.83946 5.89919 5.95981 6.15982 6.27528 6.48343 6.56716 6.59806 6.88497 7.04991 7.24346 7.35555 7.44714 7.58073 8.25616 8.49758 8.91642 9.69830 11.06962 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041253 B = 0.004742 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.569233 B = 5903.038336 C = 5999.533273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 H 0.037 0.963 4 C -0.094 4.094 5 C 0.009 3.991 6 C -0.600 4.600 7 H 0.048 0.952 8 C 0.014 3.986 9 N -0.915 5.915 10 Si 1.070 2.930 11 H -0.289 1.289 12 H -0.284 1.284 13 H -0.288 1.288 14 N -0.507 5.507 15 C 0.032 3.968 16 C -0.108 4.108 17 C 0.020 3.980 18 C -0.132 4.132 19 C 0.217 3.783 20 N -0.435 5.435 21 C 0.049 3.951 22 H 0.062 0.938 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.002 0.998 28 H 0.011 0.989 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 -5.837 17.522 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 H 0.055 0.945 4 C -0.132 4.132 5 C -0.028 4.028 6 C -0.638 4.638 7 H 0.067 0.933 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.899 3.101 11 H -0.215 1.215 12 H -0.210 1.210 13 H -0.215 1.215 14 N -0.231 5.231 15 C -0.095 4.095 16 C -0.147 4.147 17 C 0.016 3.984 18 C -0.191 4.191 19 C -0.101 4.101 20 N -0.110 5.110 21 C -0.081 4.081 22 H 0.081 0.919 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.654 -4.678 16.320 17.057 hybrid contribution 0.080 0.504 1.537 1.620 sum 1.735 -4.174 17.857 18.420 Atomic orbital electron populations 1.21841 0.94409 1.02330 1.01233 1.22052 0.95890 0.95547 0.90254 0.94506 1.21570 0.99653 0.99352 0.92612 1.19256 0.96262 0.94870 0.92452 1.22084 1.34393 1.14271 0.93058 0.93336 1.25841 0.95985 0.95857 1.01296 1.70755 1.31097 1.19603 1.33711 0.83525 0.76023 0.75162 0.75393 1.21543 1.21022 1.21451 1.64955 1.08241 1.48662 1.01238 1.23284 0.88918 1.01678 0.95658 1.22695 0.96846 1.00645 0.94550 1.19153 0.96652 0.85076 0.97493 1.21854 1.01490 1.00636 0.95085 1.29090 0.93398 0.94500 0.93118 1.81222 1.09058 1.11641 1.09066 1.23006 0.96792 0.98201 0.90088 0.91931 0.93832 0.91456 0.92366 0.93084 0.97946 0.97113 0.92152 0.88781 0.93559 0.90547 0.88540 0.89762 0.91755 0.91708 0.93329 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.91 37.16 0.33 -1.85 16 2 C 0.07 1.17 1.82 -67.71 -0.12 1.05 16 3 H 0.04 0.66 7.99 -51.93 -0.41 0.25 16 4 C -0.09 -1.90 4.59 -26.73 -0.12 -2.03 16 5 C 0.01 0.23 3.92 -27.88 -0.11 0.12 16 6 C -0.60 -17.14 9.11 -34.44 -0.31 -17.45 16 7 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 9 N -0.92 -28.26 13.65 55.43 0.76 -27.50 16 10 Si 1.07 25.49 29.90 -169.99 -5.08 20.41 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 14 N -0.51 -6.83 5.11 -222.49 -1.14 -7.97 16 15 C 0.03 0.40 5.39 -1.90 -0.01 0.39 16 16 C -0.11 -0.99 6.14 -24.87 -0.15 -1.14 16 17 C 0.02 0.19 0.88 -155.94 -0.14 0.05 16 18 C -0.13 -0.87 8.19 37.16 0.30 -0.56 16 19 C 0.22 2.62 13.59 -20.76 -0.28 2.34 16 20 N -0.44 -6.40 18.54 42.15 0.78 -5.62 16 21 C 0.05 0.54 4.77 -2.75 -0.01 0.52 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.57 7.24 -51.93 -0.38 0.19 16 24 H 0.07 1.15 6.70 -51.93 -0.35 0.81 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 1.03 6.65 -51.93 -0.35 0.69 16 27 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 28 H 0.01 0.28 6.71 -51.93 -0.35 -0.07 16 29 H 0.27 8.24 7.22 -40.82 -0.29 7.94 16 30 H 0.09 1.19 7.53 -51.93 -0.39 0.79 16 31 H 0.05 0.64 8.00 -51.93 -0.42 0.23 16 32 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 33 H 0.10 0.72 7.84 -51.93 -0.41 0.31 16 34 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 38 H 0.10 0.90 7.69 -51.93 -0.40 0.50 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -31.94 306.28 -7.04 -38.98 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -6.25 Total: -4.67 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.73 Total: -18.25 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.40 Total: -41.09 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.94 -7.04 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.760 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds