Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47031 * 2 1 4 4 C 1.53001 * 109.46911 * 240.00515 * 2 1 3 5 5 C 1.53006 * 109.47173 * 65.54075 * 4 2 1 6 6 C 1.50694 * 109.47206 * 174.62573 * 5 4 2 7 7 H 1.07996 * 119.99946 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00142 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99739 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47030 * 269.99696 * 10 8 6 12 12 H 1.48497 * 109.47087 * 149.99943 * 10 8 6 13 13 H 1.48500 * 109.46968 * 29.99938 * 10 8 6 14 14 N 1.46897 * 109.47388 * 120.00905 * 2 1 3 15 15 C 1.48532 * 111.00086 * 179.60829 * 14 2 1 16 16 C 1.54940 * 103.22576 * 159.71696 * 15 14 2 17 17 C 1.54596 * 102.92317 * 322.58357 * 16 15 14 18 18 C 1.52998 * 110.30622 * 140.87736 * 17 16 15 19 19 C 1.47201 * 110.39159 * 263.00077 * 17 16 15 20 20 N 5.16674 * 114.63869 * 62.50827 * 2 1 3 21 21 C 1.47910 * 110.99468 * 297.00016 * 14 2 1 22 22 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46747 * 299.99420 * 1 2 3 24 24 H 1.08996 * 109.47258 * 59.99614 * 1 2 3 25 25 H 1.09003 * 109.47165 * 305.54647 * 4 2 1 26 26 H 1.09000 * 109.47177 * 185.54047 * 4 2 1 27 27 H 1.09001 * 109.46787 * 54.62451 * 5 4 2 28 28 H 1.09001 * 109.46792 * 294.62666 * 5 4 2 29 29 H 0.96997 * 119.99921 * 0.02562 * 9 8 6 30 30 H 1.08995 * 110.66173 * 278.15295 * 15 14 2 31 31 H 1.09000 * 110.66438 * 41.27853 * 15 14 2 32 32 H 1.09006 * 110.71969 * 204.22434 * 16 15 14 33 33 H 1.09001 * 110.72243 * 80.94733 * 16 15 14 34 34 H 1.09000 * 109.47146 * 304.27613 * 18 17 16 35 35 H 1.08997 * 109.47336 * 64.28278 * 18 17 16 36 36 H 1.09006 * 109.46615 * 184.28441 * 18 17 16 37 37 H 1.08999 * 109.91599 * 333.50858 * 21 14 2 38 38 H 1.09005 * 109.91503 * 94.60910 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6469 0.0762 -2.4946 6 6 2.2606 -0.5619 -3.7141 7 1 2.8704 -1.4473 -3.6112 8 6 2.0444 -0.0148 -4.9612 9 7 1.3022 1.0637 -5.0864 10 14 2.8057 -0.8054 -6.4727 11 1 4.1453 -0.2138 -6.7191 12 1 1.9337 -0.5635 -7.6501 13 1 2.9433 -2.2672 -6.2505 14 7 2.0198 -0.6927 1.1993 15 6 3.5045 -0.7207 1.2288 16 6 3.8246 -0.9783 2.7228 17 6 2.7392 -0.1568 3.4555 18 6 2.2325 -0.9201 4.6809 19 6 3.2725 1.1553 3.8565 20 7 3.6840 2.1679 4.1660 21 6 1.6054 0.0184 2.4283 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.5978 -1.7161 -1.3005 26 1 3.1255 -0.8079 -1.2012 27 1 2.0083 1.1001 -2.3995 28 1 0.5615 0.0818 -2.5948 29 1 0.9072 1.4744 -4.3014 30 1 3.8863 -1.5313 0.6082 31 1 3.9138 0.2370 0.9072 32 1 4.8202 -0.6117 2.9727 33 1 3.7319 -2.0382 2.9598 34 1 1.8750 -1.9031 4.3744 35 1 3.0449 -1.0362 5.3982 36 1 1.4163 -0.3646 5.1430 37 1 1.4592 1.0770 2.2134 38 1 0.6815 -0.4133 2.8134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509008.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = -13.590759 kcal Electronic energy + Delta-G solvation = -16751.458270 eV Core-core repulsion = 14206.103724 eV Total energy + Delta-G solvation = -2545.354546 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95248 -38.04950 -36.60810 -35.13139 -32.67162 -31.28924 -29.23984 -27.46917 -26.23692 -24.34127 -22.89059 -22.74600 -20.86479 -19.00123 -18.24457 -16.86513 -16.17652 -15.83528 -15.64089 -15.36536 -15.14894 -14.81613 -14.55837 -14.23461 -14.07398 -13.83387 -13.72457 -13.36283 -13.02548 -12.80446 -12.75692 -12.49802 -12.39169 -12.10919 -11.94913 -11.88709 -11.79163 -11.76958 -11.58514 -11.42269 -10.62160 -10.52861 -9.47980 -8.68337 -6.38356 1.52479 1.57427 1.61838 1.63093 1.79647 2.56478 2.62211 3.07478 3.16759 3.45665 3.57259 3.85578 4.00784 4.08274 4.27431 4.35236 4.39550 4.54099 4.69860 4.77251 4.79905 4.83369 4.84530 4.91238 4.98946 5.03458 5.06496 5.09170 5.13504 5.28841 5.36306 5.44054 5.56562 5.86950 5.95399 6.06572 6.20444 6.42074 6.59538 7.43812 8.72458 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.041253 B = 0.004742 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.569233 B = 5903.038336 C = 5999.533273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.079 3.921 3 H 0.016 0.984 4 C -0.080 4.080 5 C 0.012 3.988 6 C -0.617 4.617 7 H 0.051 0.949 8 C -0.041 4.041 9 N -0.940 5.940 10 Si 1.120 2.880 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.266 1.266 14 N -0.502 5.502 15 C 0.023 3.977 16 C -0.097 4.097 17 C 0.027 3.973 18 C -0.128 4.128 19 C 0.237 3.763 20 N -0.487 5.487 21 C 0.046 3.954 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.059 0.941 26 H 0.048 0.952 27 H -0.023 1.023 28 H -0.003 1.003 29 H 0.254 0.746 30 H 0.092 0.908 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.033 0.967 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.402 -7.990 18.903 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 H 0.034 0.966 4 C -0.118 4.118 5 C -0.026 4.026 6 C -0.655 4.655 7 H 0.069 0.931 8 C -0.238 4.238 9 N -0.578 5.578 10 Si 0.941 3.059 11 H -0.200 1.200 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.226 5.226 15 C -0.104 4.104 16 C -0.136 4.136 17 C 0.023 3.977 18 C -0.186 4.186 19 C -0.080 4.080 20 N -0.163 5.163 21 C -0.083 4.083 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.060 0.940 25 H 0.077 0.923 26 H 0.067 0.933 27 H -0.005 1.005 28 H 0.015 0.985 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.924 -6.836 17.738 19.107 hybrid contribution -0.008 1.187 1.129 1.638 sum 1.916 -5.649 18.867 19.787 Atomic orbital electron populations 1.21774 0.93370 1.02814 1.01326 1.21776 0.96669 0.94088 0.90388 0.96586 1.21340 0.99533 0.98731 0.92209 1.19180 0.95048 0.94072 0.94287 1.22543 1.34218 1.14356 0.94359 0.93083 1.27456 0.95636 0.95565 1.05096 1.70895 1.32791 1.21037 1.33067 0.82912 0.75733 0.75574 0.71721 1.19980 1.20818 1.19078 1.64942 1.08874 1.48006 1.00751 1.23375 0.88236 1.00468 0.98368 1.22710 0.97072 1.02293 0.91495 1.19331 0.95989 0.83970 0.98442 1.21899 1.02095 1.00958 0.93654 1.29655 0.92136 0.94566 0.91659 1.81241 1.10779 1.13230 1.11025 1.23144 0.98525 0.97276 0.89357 0.91158 0.91143 0.93991 0.92263 0.93304 1.00486 0.98490 0.93662 0.88987 0.95852 0.89827 0.85672 0.87910 0.90617 0.91049 0.94894 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.91 71.98 0.64 -3.47 16 2 C 0.08 2.64 1.82 44.92 0.08 2.73 16 3 H 0.02 0.60 7.99 -2.39 -0.02 0.58 16 4 C -0.08 -3.29 4.59 30.60 0.14 -3.15 16 5 C 0.01 0.61 3.92 29.85 0.12 0.73 16 6 C -0.62 -35.76 9.11 25.60 0.23 -35.53 16 7 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 8 C -0.04 -2.39 5.46 84.66 0.46 -1.93 16 9 N -0.94 -59.43 13.65 21.45 0.29 -59.14 16 10 Si 1.12 50.83 29.90 68.60 2.05 52.88 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 14 N -0.50 -12.72 5.11 -857.83 -4.38 -17.10 16 15 C 0.02 0.55 5.39 86.65 0.47 1.02 16 16 C -0.10 -1.48 6.14 31.80 0.20 -1.29 16 17 C 0.03 0.43 0.88 -53.11 -0.05 0.38 16 18 C -0.13 -1.14 8.19 71.98 0.59 -0.55 16 19 C 0.24 5.40 13.59 89.44 1.22 6.61 16 20 N -0.49 -14.16 18.54 20.01 0.37 -13.79 16 21 C 0.05 0.91 4.77 86.44 0.41 1.32 16 22 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.07 1.74 7.24 -2.38 -0.02 1.72 16 24 H 0.04 1.47 6.70 -2.39 -0.02 1.46 16 25 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.05 1.99 6.65 -2.39 -0.02 1.98 16 27 H -0.02 -1.32 8.01 -2.39 -0.02 -1.34 16 28 H 0.00 -0.17 6.71 -2.39 -0.02 -0.19 16 29 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 30 H 0.09 2.21 7.53 -2.39 -0.02 2.19 16 31 H 0.02 0.66 8.00 -2.39 -0.02 0.64 16 32 H 0.08 1.22 7.84 -2.38 -0.02 1.20 16 33 H 0.13 1.28 7.84 -2.39 -0.02 1.27 16 34 H 0.10 0.61 8.11 -2.39 -0.02 0.59 16 35 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.03 0.77 7.15 -2.39 -0.02 0.76 16 38 H 0.12 1.83 7.69 -2.38 -0.02 1.81 16 Total: -1.00 -70.98 306.28 3.96 -67.02 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.12 Total: 3.27 kcal Atomic # 6 Polarization: -37.64 SS G_CDS: 4.51 Total: -33.14 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -3.72 Total: -90.03 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -70.98 3.96 -67.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509008.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.426 kcal (2) G-P(sol) polarization free energy of solvation -70.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds