Wall clock time and date at job start Sun Mar 29 2020 22:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.52999 * 109.47639 * 119.99906 * 2 1 3 5 5 C 1.52996 * 109.47040 * 295.03741 * 4 2 1 6 6 C 1.50707 * 109.47123 * 185.17025 * 5 4 2 7 7 H 1.08000 * 119.99634 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00301 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47136 * 180.02562 * 10 8 6 12 12 H 1.48508 * 109.46834 * 60.00536 * 10 8 6 13 13 H 1.48495 * 109.47304 * 300.00619 * 10 8 6 14 14 N 1.46900 * 109.47046 * 240.00054 * 2 1 3 15 15 C 1.47893 * 111.00214 * 299.55145 * 14 2 1 16 16 C 1.53994 * 107.06081 * 214.15532 * 15 14 2 17 17 C 1.54589 * 105.13874 * 1.22426 * 16 15 14 18 18 C 1.53001 * 110.72455 * 140.31469 * 17 16 15 19 19 C 1.47202 * 110.72595 * 263.42242 * 17 16 15 20 20 N 5.24615 * 114.01786 * 256.66355 * 2 1 3 21 21 C 1.48532 * 111.00134 * 182.15316 * 14 2 1 22 22 H 1.08992 * 109.47384 * 60.00149 * 1 2 3 23 23 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46919 * 299.99797 * 1 2 3 25 25 H 1.08999 * 109.47127 * 175.03340 * 4 2 1 26 26 H 1.08997 * 109.47007 * 55.03308 * 4 2 1 27 27 H 1.08996 * 109.47381 * 65.16578 * 5 4 2 28 28 H 1.09004 * 109.47331 * 305.16635 * 5 4 2 29 29 H 0.97001 * 119.99795 * 0.02562 * 9 8 6 30 30 H 1.08999 * 109.91682 * 333.50930 * 15 14 2 31 31 H 1.09006 * 109.91654 * 94.60485 * 15 14 2 32 32 H 1.09001 * 110.30765 * 120.13894 * 16 15 14 33 33 H 1.09001 * 110.30576 * 242.30761 * 16 15 14 34 34 H 1.09002 * 109.46959 * 61.45607 * 18 17 16 35 35 H 1.09001 * 109.47189 * 181.45311 * 18 17 16 36 36 H 1.09002 * 109.47071 * 301.45659 * 18 17 16 37 37 H 1.08998 * 110.67482 * 278.15981 * 21 14 2 38 38 H 1.09004 * 110.66929 * 41.28922 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6346 0.0685 2.4953 6 6 2.2439 -0.5717 3.7161 7 1 2.8584 -1.4538 3.6133 8 6 2.0166 -0.0312 4.9640 9 7 1.2679 1.0427 5.0891 10 14 2.7713 -0.8251 6.4771 11 1 2.3778 -0.0586 7.6866 12 1 4.2509 -0.8252 6.3502 13 1 2.2847 -2.2229 6.5975 14 7 2.0196 -0.6925 -1.1994 15 6 1.5543 -2.0960 -1.2283 16 6 2.6722 -2.9293 -1.8821 17 6 3.8017 -1.9194 -2.1888 18 6 5.1719 -2.5350 -1.8983 19 6 3.7247 -1.4599 -3.5851 20 7 3.6653 -1.1053 -4.6627 21 6 3.5035 -0.7576 -1.2080 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.1265 -0.7988 1.2058 26 1 1.6060 -1.7199 1.2948 27 1 0.5486 0.0679 2.5884 28 1 1.9911 1.0948 2.4071 29 1 0.8751 1.4543 4.3034 30 1 1.3741 -2.4484 -0.2127 31 1 0.6389 -2.1717 -1.8153 32 1 3.0263 -3.6949 -1.1918 33 1 2.3130 -3.3868 -2.8040 34 1 5.3228 -3.4043 -2.5383 35 1 5.9506 -1.7984 -2.0965 36 1 5.2187 -2.8408 -0.8531 37 1 3.9275 0.1761 -1.5774 38 1 3.8843 -0.9870 -0.2128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:04 Heat of formation + Delta-G solvation = -7.129567 kcal Electronic energy + Delta-G solvation = -16980.922486 eV Core-core repulsion = 14435.848118 eV Total energy + Delta-G solvation = -2545.074368 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.08339 -38.01839 -36.39956 -35.10603 -32.52475 -30.61312 -30.15649 -26.68185 -26.56234 -24.19859 -23.56441 -22.88687 -20.19224 -18.95828 -18.21462 -16.90989 -16.13843 -15.84215 -15.60382 -15.29902 -15.05931 -14.82746 -14.57322 -14.10759 -14.00106 -13.67218 -13.52761 -13.47780 -13.19373 -12.75519 -12.68296 -12.44251 -12.26532 -12.21938 -11.98816 -11.95764 -11.82167 -11.58567 -11.52782 -11.26559 -10.70866 -10.48212 -9.25614 -8.62394 -6.34243 1.55080 1.63212 1.70606 1.78112 1.81966 2.60222 2.84400 3.01592 3.20774 3.48553 3.63387 3.96803 4.01588 4.12579 4.31445 4.37142 4.44444 4.61868 4.64321 4.67248 4.77711 4.81915 4.90534 4.95311 4.98329 5.05228 5.09420 5.18436 5.22789 5.22913 5.31489 5.49154 5.56881 5.95367 6.03277 6.07479 6.24684 6.56643 6.63513 7.48034 8.77017 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.033733 B = 0.005535 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.856322 B = 5057.198168 C = 5510.939609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 H 0.066 0.934 4 C -0.119 4.119 5 C 0.014 3.986 6 C -0.615 4.615 7 H 0.052 0.948 8 C -0.041 4.041 9 N -0.942 5.942 10 Si 1.115 2.885 11 H -0.288 1.288 12 H -0.268 1.268 13 H -0.268 1.268 14 N -0.521 5.521 15 C 0.021 3.979 16 C -0.109 4.109 17 C 0.034 3.966 18 C -0.134 4.134 19 C 0.253 3.747 20 N -0.488 5.488 21 C 0.037 3.963 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.059 0.941 27 H -0.008 1.008 28 H -0.018 1.018 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -9.794 -11.769 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 H 0.085 0.915 4 C -0.158 4.158 5 C -0.024 4.024 6 C -0.653 4.653 7 H 0.071 0.929 8 C -0.238 4.238 9 N -0.579 5.579 10 Si 0.936 3.064 11 H -0.213 1.213 12 H -0.193 1.193 13 H -0.193 1.193 14 N -0.244 5.244 15 C -0.107 4.107 16 C -0.148 4.148 17 C 0.030 3.970 18 C -0.192 4.192 19 C -0.064 4.064 20 N -0.164 5.164 21 C -0.092 4.092 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.011 0.989 28 H 0.000 1.000 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.081 -8.830 -12.257 15.938 hybrid contribution -0.239 0.019 -0.531 0.583 sum 4.842 -8.811 -12.789 16.267 Atomic orbital electron populations 1.21745 0.94136 1.02140 1.01220 1.21724 0.96086 0.97642 0.87614 0.91544 1.21995 1.00368 0.99206 0.94235 1.19121 0.94775 0.94359 0.94104 1.22531 1.33944 1.14591 0.94230 0.92944 1.27384 0.95675 0.95618 1.05098 1.70921 1.32695 1.21226 1.33097 0.82967 0.76200 0.75342 0.71870 1.21334 1.19278 1.19325 1.65117 1.07471 1.14950 1.36851 1.23054 0.99127 0.87572 1.00921 1.22599 0.92724 0.96923 1.02546 1.19216 0.99955 0.96300 0.81517 1.21861 0.91445 1.01482 1.04449 1.29144 0.91079 0.91785 0.94394 1.81186 1.10670 1.10262 1.14277 1.23510 0.89056 0.97967 0.98660 0.91725 0.92116 0.93623 0.92055 0.92228 0.98936 0.99965 0.93608 0.92369 0.90269 0.86950 0.89625 0.89971 0.91239 0.88840 0.90087 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.86 71.98 0.64 -3.53 16 2 C 0.08 2.49 2.54 44.91 0.11 2.60 16 3 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -4.44 3.99 30.59 0.12 -4.31 16 5 C 0.01 0.70 3.91 29.85 0.12 0.81 16 6 C -0.62 -33.92 9.11 25.60 0.23 -33.69 16 7 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 8 C -0.04 -2.32 5.46 84.66 0.46 -1.85 16 9 N -0.94 -58.08 13.65 21.45 0.29 -57.78 16 10 Si 1.11 49.00 29.90 68.60 2.05 51.05 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 14 N -0.52 -13.79 5.27 -857.87 -4.52 -18.31 16 15 C 0.02 0.46 5.18 86.45 0.45 0.91 16 16 C -0.11 -1.76 6.05 31.47 0.19 -1.57 16 17 C 0.03 0.62 0.88 -52.78 -0.05 0.57 16 18 C -0.13 -1.64 8.46 71.98 0.61 -1.04 16 19 C 0.25 6.04 13.83 89.44 1.24 7.28 16 20 N -0.49 -14.40 18.54 20.01 0.37 -14.03 16 21 C 0.04 0.84 5.26 86.65 0.46 1.29 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.06 1.74 7.08 -2.39 -0.02 1.72 16 24 H 0.04 1.59 6.68 -2.39 -0.02 1.57 16 25 H 0.06 2.20 5.79 -2.39 -0.01 2.19 16 26 H 0.06 2.15 6.17 -2.39 -0.01 2.14 16 27 H -0.01 -0.40 6.69 -2.39 -0.02 -0.42 16 28 H -0.02 -0.97 8.01 -2.38 -0.02 -0.99 16 29 H 0.25 15.91 7.22 -92.71 -0.67 15.24 16 30 H 0.06 1.39 5.36 -2.39 -0.01 1.38 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.11 1.34 7.85 -2.39 -0.02 1.32 16 33 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 34 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.97 8.12 -2.39 -0.02 0.96 16 37 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 38 H 0.08 1.89 5.41 -2.38 -0.01 1.88 16 Total: -1.00 -67.62 300.92 3.91 -63.72 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.13 Total: 7.89 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 4.58 Total: -32.53 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.86 Total: -90.13 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Total: -67.62 3.91 -63.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.588 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds