Wall clock time and date at job start Sun Mar 29 2020 21:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47024 * 2 1 4 4 C 1.47197 * 109.46729 * 240.00198 * 2 1 3 5 5 N 2.60805 * 109.46859 * 240.00280 * 2 1 3 6 6 N 1.46901 * 109.47133 * 120.00239 * 2 1 3 7 7 C 1.46900 * 110.99698 * 174.31820 * 6 2 1 8 8 C 1.52997 * 109.47080 * 127.67590 * 7 6 2 9 9 C 1.53003 * 109.47251 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46902 * 299.99505 * 9 8 7 11 11 C 1.50695 * 109.47077 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99754 * 179.72943 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46853 * 90.00060 * 15 13 11 17 17 H 1.48491 * 109.47355 * 210.00418 * 15 13 11 18 18 H 1.48502 * 109.46965 * 330.00758 * 15 13 11 19 19 C 1.53008 * 109.47022 * 60.00085 * 10 9 8 20 20 C 1.52995 * 109.47067 * 299.99884 * 19 10 9 21 21 H 1.09001 * 109.46684 * 304.63792 * 1 2 3 22 22 H 1.09003 * 109.47427 * 64.63936 * 1 2 3 23 23 H 1.08999 * 109.47160 * 184.64272 * 1 2 3 24 24 H 1.09007 * 109.46720 * 186.99668 * 3 2 1 25 25 H 1.08992 * 109.47314 * 307.00201 * 3 2 1 26 26 H 1.09005 * 109.47091 * 67.00132 * 3 2 1 27 27 H 1.00896 * 111.00234 * 298.27388 * 6 2 1 28 28 H 1.08991 * 109.47340 * 7.66834 * 7 6 2 29 29 H 1.09004 * 109.47346 * 59.99471 * 8 7 6 30 30 H 1.08999 * 109.47031 * 299.99834 * 8 7 6 31 31 H 1.08996 * 109.47105 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.46724 * 59.99679 * 9 8 7 33 33 H 1.09002 * 109.47624 * 300.00156 * 10 9 8 34 34 H 0.97002 * 119.99719 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46863 * 59.99605 * 19 10 9 36 36 H 1.09004 * 109.46901 * 179.97438 * 19 10 9 37 37 H 1.09004 * 109.47295 * 300.00077 * 20 19 10 38 38 H 1.09003 * 109.47304 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1296 6 7 2.0197 -0.6925 1.1994 7 6 3.4818 -0.8308 1.1673 8 6 4.0740 -0.2895 2.4701 9 6 5.5968 -0.4340 2.4370 10 6 5.9656 -1.9110 2.2842 11 6 7.4654 -2.0534 2.2510 12 1 8.0929 -1.1781 2.3312 13 6 8.0367 -3.3013 2.1181 14 7 9.3456 -3.4250 2.0838 15 14 6.9515 -4.8155 1.9801 16 1 6.6458 -5.0767 0.5505 17 1 7.6596 -5.9863 2.5568 18 1 5.6861 -4.5870 2.7230 19 6 5.3734 -2.4525 0.9814 20 6 3.8507 -2.3079 1.0145 21 1 -0.3633 0.5841 0.8456 22 1 -0.3634 0.4402 -0.9286 23 1 -0.3633 -1.0243 0.0832 24 1 3.1229 1.4450 -0.1252 25 1 1.5780 1.9912 -0.8206 26 1 1.7825 1.9189 0.9460 27 1 1.7196 -0.2190 2.0383 28 1 3.8817 -0.2671 0.3246 29 1 3.6740 -0.8533 3.3129 30 1 3.8108 0.7626 2.5792 31 1 6.0187 -0.0480 3.3649 32 1 5.9969 0.1295 1.5941 33 1 5.5654 -2.4746 3.1270 34 1 9.7475 -4.3029 1.9907 35 1 5.7736 -1.8889 0.1386 36 1 5.6366 -3.5047 0.8724 37 1 3.4504 -2.8714 1.8574 38 1 3.4287 -2.6940 0.0866 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:39 Heat of formation + Delta-G solvation = 12.694164 kcal Electronic energy + Delta-G solvation = -17334.040518 eV Core-core repulsion = 14789.825772 eV Total energy + Delta-G solvation = -2544.214746 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.47242 -37.18038 -35.33326 -32.92268 -31.26204 -30.15979 -28.11101 -27.64949 -24.10669 -23.25314 -22.01145 -20.63275 -19.03848 -17.16688 -16.63842 -15.99086 -15.23135 -14.52595 -14.47642 -13.67167 -13.48299 -13.39682 -13.10241 -12.92014 -12.70864 -12.58448 -12.44129 -12.24728 -11.83560 -11.79012 -11.63598 -11.50440 -11.15201 -10.84412 -10.58520 -10.48683 -10.04934 -9.81711 -9.52497 -9.04255 -8.87862 -8.55521 -8.40597 -6.03317 -4.01846 2.69404 2.77893 3.32736 3.42440 3.44814 3.73767 4.06540 4.45816 4.58461 4.73421 5.09259 5.24105 5.24900 5.29728 5.39514 5.41796 5.46345 5.61611 5.75995 5.83534 5.96497 6.07066 6.10248 6.19497 6.21690 6.32908 6.54306 6.62490 6.70387 6.91901 6.99285 7.10063 7.21225 7.34773 7.58240 7.60897 7.83249 8.56812 9.00888 9.60237 11.10113 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.006827 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.641987 B = 4100.628018 C = 4395.660244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.209 3.791 3 C -0.180 4.180 4 C 0.219 3.781 5 N -0.422 5.422 6 N -0.673 5.673 7 C 0.085 3.915 8 C -0.129 4.129 9 C -0.095 4.095 10 C 0.015 3.985 11 C -0.513 4.513 12 H 0.072 0.928 13 C 0.069 3.931 14 N -0.904 5.904 15 Si 0.886 3.114 16 H -0.280 1.280 17 H -0.299 1.299 18 H -0.264 1.264 19 C -0.120 4.120 20 C -0.104 4.104 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.355 0.645 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.263 0.737 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.337 9.253 -0.723 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.114 3.886 3 C -0.240 4.240 4 C -0.100 4.100 5 N -0.097 5.097 6 N -0.307 5.307 7 C -0.024 4.024 8 C -0.168 4.168 9 C -0.134 4.134 10 C -0.004 4.004 11 C -0.551 4.551 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.227 1.227 18 H -0.189 1.189 19 C -0.158 4.158 20 C -0.143 4.143 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.176 0.824 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.741 7.692 -2.389 19.484 hybrid contribution -0.201 0.108 0.339 0.409 sum -17.942 7.800 -2.050 19.672 Atomic orbital electron populations 1.21837 0.90914 1.03900 1.02905 1.18439 0.95919 0.90267 0.83969 1.22597 1.02907 0.94819 1.03707 1.28796 0.93410 0.93553 0.94242 1.81205 1.08026 1.08261 1.12255 1.60746 1.12942 1.54246 1.02742 1.21703 0.84667 0.97779 0.98203 1.22015 0.98724 0.99146 0.96874 1.21391 0.91752 0.99156 1.01062 1.19149 0.96446 0.92015 0.92815 1.21087 0.89488 0.94450 1.50052 0.90991 1.25028 0.94752 0.98922 0.94552 1.69906 1.09616 1.23882 1.50819 0.86853 0.80825 0.82481 0.78141 1.20736 1.22657 1.18884 1.21978 0.92425 1.00249 1.01122 1.21596 0.97215 0.94548 1.00922 0.90630 0.91500 0.90774 0.91265 0.91186 0.90379 0.82392 0.92265 0.91529 0.93026 0.92453 0.92905 0.95509 0.92764 0.92638 0.93524 0.92047 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.73 37.16 0.32 -0.64 16 2 C 0.21 2.06 0.88 -134.39 -0.12 1.94 16 3 C -0.18 -1.45 8.25 37.16 0.31 -1.14 16 4 C 0.22 3.03 11.95 -20.76 -0.25 2.78 16 5 N -0.42 -7.07 18.54 42.16 0.78 -6.29 16 6 N -0.67 -7.54 6.00 -95.88 -0.57 -8.12 16 7 C 0.09 1.25 1.59 -67.71 -0.11 1.14 16 8 C -0.13 -1.86 5.02 -26.73 -0.13 -2.00 16 9 C -0.10 -1.80 5.14 -26.73 -0.14 -1.94 16 10 C 0.01 0.34 1.69 -91.77 -0.16 0.18 16 11 C -0.51 -14.48 9.14 -34.44 -0.31 -14.79 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 14 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 15 Si 0.89 22.69 24.37 -169.99 -4.14 18.55 16 16 H -0.28 -7.13 6.87 56.52 0.39 -6.74 16 17 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 18 H -0.26 -6.43 6.53 56.52 0.37 -6.07 16 19 C -0.12 -2.66 4.68 -26.73 -0.13 -2.79 16 20 C -0.10 -1.92 5.48 -26.73 -0.15 -2.06 16 21 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.68 6.77 -51.92 -0.35 0.33 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.35 3.10 8.09 -39.29 -0.32 2.78 16 28 H 0.06 0.92 5.55 -51.93 -0.29 0.63 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 35 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.87 7.61 -51.93 -0.40 0.48 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -32.19 295.72 -5.81 -37.99 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.15 Total: -1.78 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -0.95 Total: -17.40 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.98 Total: -41.81 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.19 -5.81 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.688 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds