Wall clock time and date at job start Sun Mar 29 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47024 * 2 1 4 4 C 1.47197 * 109.46729 * 240.00198 * 2 1 3 5 5 N 2.60805 * 109.46859 * 240.00280 * 2 1 3 6 6 N 1.46901 * 109.47133 * 120.00239 * 2 1 3 7 7 C 1.46900 * 110.99698 * 174.31820 * 6 2 1 8 8 C 1.52997 * 109.47080 * 127.67590 * 7 6 2 9 9 C 1.53003 * 109.47251 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.46902 * 299.99505 * 9 8 7 11 11 C 1.50695 * 109.47077 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99993 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99754 * 179.72943 * 13 11 10 15 15 Si 1.86803 * 120.00083 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46853 * 90.00060 * 15 13 11 17 17 H 1.48491 * 109.47355 * 210.00418 * 15 13 11 18 18 H 1.48502 * 109.46965 * 330.00758 * 15 13 11 19 19 C 1.53008 * 109.47022 * 60.00085 * 10 9 8 20 20 C 1.52995 * 109.47067 * 299.99884 * 19 10 9 21 21 H 1.09001 * 109.46684 * 304.63792 * 1 2 3 22 22 H 1.09003 * 109.47427 * 64.63936 * 1 2 3 23 23 H 1.08999 * 109.47160 * 184.64272 * 1 2 3 24 24 H 1.09007 * 109.46720 * 186.99668 * 3 2 1 25 25 H 1.08992 * 109.47314 * 307.00201 * 3 2 1 26 26 H 1.09005 * 109.47091 * 67.00132 * 3 2 1 27 27 H 1.00896 * 111.00234 * 298.27388 * 6 2 1 28 28 H 1.08991 * 109.47340 * 7.66834 * 7 6 2 29 29 H 1.09004 * 109.47346 * 59.99471 * 8 7 6 30 30 H 1.08999 * 109.47031 * 299.99834 * 8 7 6 31 31 H 1.08996 * 109.47105 * 179.97438 * 9 8 7 32 32 H 1.08997 * 109.46724 * 59.99679 * 9 8 7 33 33 H 1.09002 * 109.47624 * 300.00156 * 10 9 8 34 34 H 0.97002 * 119.99719 * 179.97438 * 14 13 11 35 35 H 1.09002 * 109.46863 * 59.99605 * 19 10 9 36 36 H 1.09004 * 109.46901 * 179.97438 * 19 10 9 37 37 H 1.09004 * 109.47295 * 300.00077 * 20 19 10 38 38 H 1.09003 * 109.47304 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 -1.2019 5 7 2.3993 -1.2294 -2.1296 6 7 2.0197 -0.6925 1.1994 7 6 3.4818 -0.8308 1.1673 8 6 4.0740 -0.2895 2.4701 9 6 5.5968 -0.4340 2.4370 10 6 5.9656 -1.9110 2.2842 11 6 7.4654 -2.0534 2.2510 12 1 8.0929 -1.1781 2.3312 13 6 8.0367 -3.3013 2.1181 14 7 9.3456 -3.4250 2.0838 15 14 6.9515 -4.8155 1.9801 16 1 6.6458 -5.0767 0.5505 17 1 7.6596 -5.9863 2.5568 18 1 5.6861 -4.5870 2.7230 19 6 5.3734 -2.4525 0.9814 20 6 3.8507 -2.3079 1.0145 21 1 -0.3633 0.5841 0.8456 22 1 -0.3634 0.4402 -0.9286 23 1 -0.3633 -1.0243 0.0832 24 1 3.1229 1.4450 -0.1252 25 1 1.5780 1.9912 -0.8206 26 1 1.7825 1.9189 0.9460 27 1 1.7196 -0.2190 2.0383 28 1 3.8817 -0.2671 0.3246 29 1 3.6740 -0.8533 3.3129 30 1 3.8108 0.7626 2.5792 31 1 6.0187 -0.0480 3.3649 32 1 5.9969 0.1295 1.5941 33 1 5.5654 -2.4746 3.1270 34 1 9.7475 -4.3029 1.9907 35 1 5.7736 -1.8889 0.1386 36 1 5.6366 -3.5047 0.8724 37 1 3.4504 -2.8714 1.8574 38 1 3.4287 -2.6940 0.0866 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:38 Heat of formation + Delta-G solvation = -10.188845 kcal Electronic energy + Delta-G solvation = -17335.032800 eV Core-core repulsion = 14789.825772 eV Total energy + Delta-G solvation = -2545.207028 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57270 -38.51407 -36.50188 -34.77082 -32.78729 -31.65252 -29.50073 -28.22564 -25.88106 -24.26071 -23.39789 -22.17330 -20.58893 -18.80761 -18.11659 -17.23535 -16.57415 -15.86997 -15.52167 -15.04541 -14.97323 -14.78511 -14.53464 -14.47152 -13.81072 -13.71558 -13.63206 -13.30256 -13.04766 -12.89976 -12.83907 -12.56175 -12.42948 -12.14891 -12.05499 -11.95416 -11.94512 -11.64684 -11.18530 -10.93180 -10.74922 -10.59216 -9.44723 -8.32581 -6.34390 1.27033 1.30174 1.41401 1.66015 1.75510 2.29031 2.86449 3.03588 3.12906 3.85370 3.89578 3.94857 4.09084 4.29253 4.42445 4.47733 4.64016 4.69201 4.72504 4.78307 4.82551 4.84170 4.91387 4.99333 5.06214 5.15509 5.16618 5.29202 5.35048 5.40582 5.44376 5.60808 5.69746 5.80292 5.96488 6.31909 6.43104 6.64308 6.74211 7.31234 8.84550 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036325 B = 0.006827 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.641987 B = 4100.628018 C = 4395.660244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.207 3.793 3 C -0.178 4.178 4 C 0.236 3.764 5 N -0.486 5.486 6 N -0.669 5.669 7 C 0.094 3.906 8 C -0.117 4.117 9 C -0.094 4.094 10 C 0.014 3.986 11 C -0.516 4.516 12 H 0.034 0.966 13 C 0.010 3.990 14 N -0.952 5.952 15 Si 0.946 3.054 16 H -0.282 1.282 17 H -0.297 1.297 18 H -0.241 1.241 19 C -0.118 4.118 20 C -0.098 4.098 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.376 0.624 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.067 0.933 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.031 10.527 0.421 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.113 3.887 3 C -0.238 4.238 4 C -0.082 4.082 5 N -0.162 5.162 6 N -0.305 5.305 7 C -0.015 4.015 8 C -0.155 4.155 9 C -0.132 4.132 10 C -0.005 4.005 11 C -0.554 4.554 12 H 0.052 0.948 13 C -0.186 4.186 14 N -0.593 5.593 15 Si 0.774 3.226 16 H -0.209 1.209 17 H -0.225 1.225 18 H -0.164 1.164 19 C -0.156 4.156 20 C -0.137 4.137 21 H 0.126 0.874 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.201 0.799 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.472 8.993 -1.225 23.312 hybrid contribution 1.007 -0.203 -0.029 1.027 sum -20.465 8.790 -1.254 22.309 Atomic orbital electron populations 1.21869 0.88154 1.04132 1.04897 1.18848 0.97719 0.90579 0.81557 1.22620 1.01596 0.93489 1.06071 1.29767 0.91780 0.92267 0.94391 1.81216 1.10189 1.10371 1.14462 1.60528 1.10172 1.55588 1.04248 1.21420 0.87126 0.94816 0.98153 1.21918 0.94584 1.02029 0.96934 1.21312 0.95682 0.95652 1.00583 1.19136 0.92830 0.95371 0.93185 1.21517 0.92328 0.93049 1.48512 0.94759 1.25860 0.95872 1.02252 0.94616 1.70052 1.11599 1.24678 1.52993 0.85872 0.79889 0.78623 0.78220 1.20867 1.22516 1.16436 1.21855 0.95599 0.98409 0.99704 1.21505 0.93763 0.97692 1.00717 0.87420 0.90553 0.91688 0.93285 0.89835 0.87264 0.79948 0.93287 0.90305 0.88897 0.92524 0.93992 0.95449 0.92725 0.94401 0.95614 0.91406 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.73 71.98 0.63 -0.63 16 2 C 0.21 3.31 0.88 1.72 0.00 3.31 16 3 C -0.18 -2.10 8.25 71.98 0.59 -1.50 16 4 C 0.24 6.16 11.95 89.44 1.07 7.23 16 5 N -0.49 -16.22 18.54 20.01 0.37 -15.85 16 6 N -0.67 -12.12 6.00 -457.25 -2.74 -14.86 16 7 C 0.09 2.49 1.59 44.92 0.07 2.56 16 8 C -0.12 -2.89 5.02 30.59 0.15 -2.74 16 9 C -0.09 -3.42 5.14 30.59 0.16 -3.26 16 10 C 0.01 0.62 1.69 -11.54 -0.02 0.60 16 11 C -0.52 -30.02 9.14 25.60 0.23 -29.79 16 12 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 13 C 0.01 0.63 5.45 84.66 0.46 1.09 16 14 N -0.95 -61.56 13.96 21.45 0.30 -61.26 16 15 Si 0.95 47.56 24.37 68.60 1.67 49.23 16 16 H -0.28 -14.09 6.87 99.48 0.68 -13.41 16 17 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 18 H -0.24 -11.07 6.53 99.48 0.65 -10.42 16 19 C -0.12 -5.20 4.68 30.60 0.14 -5.06 16 20 C -0.10 -3.43 5.48 30.59 0.17 -3.26 16 21 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.81 6.77 -2.38 -0.02 0.79 16 25 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.38 4.31 8.09 -89.70 -0.73 3.58 16 28 H 0.05 1.42 5.55 -2.39 -0.01 1.41 16 29 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 34 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.03 1.23 3.27 -2.38 -0.01 1.22 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.04 1.38 7.61 -2.39 -0.02 1.36 16 Total: -1.00 -74.36 295.72 3.50 -70.86 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.23 Total: 3.34 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.66 Total: -31.46 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -2.07 Total: -91.98 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.23 kcal Total: -74.36 3.50 -70.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.674 kcal (2) G-P(sol) polarization free energy of solvation -74.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds