Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47043 * 2.62066 * 3 2 1 5 5 C 1.53006 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46893 * 109.47165 * 180.02562 * 5 4 3 7 7 C 1.46905 * 111.00246 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47500 * 204.99866 * 7 6 5 9 9 C 1.53000 * 109.47200 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46989 * 60.00030 * 9 8 7 11 11 C 1.50694 * 109.47168 * 59.99989 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99792 * 179.72330 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53000 * 109.47124 * 299.99675 * 10 9 8 20 20 C 1.53000 * 109.46922 * 60.00284 * 19 10 9 21 21 H 1.09003 * 109.47069 * 242.62456 * 3 2 1 22 22 H 1.09002 * 109.47355 * 122.62052 * 3 2 1 23 23 H 1.08996 * 109.47510 * 60.00438 * 4 3 2 24 24 H 1.09000 * 109.47510 * 299.99975 * 4 3 2 25 25 H 1.08994 * 109.47345 * 59.99849 * 5 4 3 26 26 H 1.09002 * 109.46966 * 299.99830 * 5 4 3 27 27 H 1.00900 * 111.00244 * 303.94730 * 6 5 4 28 28 H 1.08998 * 109.46545 * 324.99920 * 7 6 5 29 29 H 1.08995 * 109.47132 * 59.99890 * 8 7 6 30 30 H 1.09007 * 109.46935 * 300.00130 * 8 7 6 31 31 H 1.08998 * 109.46768 * 300.00007 * 9 8 7 32 32 H 1.09000 * 109.47156 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46926 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47131 * 180.02562 * 19 10 9 36 36 H 1.08998 * 109.47544 * 300.00581 * 19 10 9 37 37 H 1.09000 * 109.47156 * 179.97438 * 20 19 10 38 38 H 1.09007 * 109.47356 * 59.99868 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4401 -0.0660 5 6 4.6486 -1.4395 -0.0653 6 7 5.1389 -2.8227 -0.1293 7 6 6.6074 -2.8613 -0.1311 8 6 7.0829 -4.1520 -0.8009 9 6 8.6124 -4.1918 -0.8034 10 6 9.1261 -4.1457 0.6371 11 6 8.5939 -5.3323 1.3984 12 1 7.9530 -6.0476 0.9045 13 6 8.9251 -5.5047 2.7257 14 7 8.4563 -6.5374 3.3916 15 14 10.0330 -4.2672 3.5803 16 1 9.2029 -3.1939 4.1840 17 1 10.8095 -4.9507 4.6456 18 1 10.9672 -3.6729 2.5906 19 6 8.6506 -2.8549 1.3070 20 6 7.1211 -2.8151 1.3094 21 1 2.9711 0.4734 0.9126 22 1 2.9711 0.5548 -0.8656 23 1 2.7556 -1.9129 -0.9785 24 1 2.7555 -1.9943 0.7996 25 1 5.0114 -0.9669 0.8474 26 1 5.0121 -0.8852 -0.9307 27 1 4.7634 -3.3748 0.6272 28 1 6.9926 -2.0030 -0.6815 29 1 6.7174 -4.1847 -1.8273 30 1 6.6976 -5.0103 -0.2505 31 1 8.9973 -3.3335 -1.3541 32 1 8.9512 -5.1111 -1.2810 33 1 10.2157 -4.1745 0.6354 34 1 8.6896 -6.6589 4.3253 35 1 9.0169 -2.8218 2.3330 36 1 9.0354 -1.9966 0.7563 37 1 6.7823 -1.8957 1.7870 38 1 6.7361 -3.6734 1.8601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = 1.813693 kcal Electronic energy + Delta-G solvation = -16703.983433 eV Core-core repulsion = 14159.296874 eV Total energy + Delta-G solvation = -2544.686559 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.57956 -37.23640 -35.62453 -33.19875 -31.84901 -29.97060 -28.93266 -25.94361 -24.16073 -22.00103 -21.59965 -20.73198 -18.73057 -17.72159 -16.29991 -15.94979 -15.47579 -14.72853 -14.32888 -14.10694 -13.96300 -13.53364 -13.33651 -12.93024 -12.58569 -12.37840 -12.18644 -12.13680 -11.73797 -11.56041 -11.40370 -11.15485 -10.93666 -10.83414 -10.46331 -10.19212 -9.99034 -9.75827 -9.32762 -9.13154 -8.81763 -8.51130 -7.98427 -6.04956 -4.01662 2.54214 2.58257 3.25571 3.37634 3.39387 3.72679 4.39314 4.42326 4.74203 5.01780 5.04564 5.27172 5.27208 5.36614 5.44396 5.61584 5.62803 5.84092 5.95937 6.00475 6.14408 6.19182 6.29477 6.31929 6.42080 6.52868 6.66748 6.75937 7.03735 7.09161 7.11794 7.27632 7.35191 7.45815 7.51157 7.70419 7.83949 8.56849 9.00334 9.58773 11.08132 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.005081 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.777158 B = 5509.547523 C = 5768.165782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.210 3.790 3 C -0.026 4.026 4 C -0.116 4.116 5 C 0.059 3.941 6 N -0.689 5.689 7 C 0.098 3.902 8 C -0.096 4.096 9 C -0.096 4.096 10 C 0.006 3.994 11 C -0.500 4.500 12 H 0.076 0.924 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.884 3.116 16 H -0.282 1.282 17 H -0.300 1.300 18 H -0.268 1.268 19 C -0.113 4.113 20 C -0.133 4.133 21 H 0.108 0.892 22 H 0.109 0.891 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.072 0.928 27 H 0.343 0.657 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.024 0.976 34 H 0.262 0.738 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.956 12.144 -6.394 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.108 4.108 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.071 4.071 6 N -0.319 5.319 7 C -0.012 4.012 8 C -0.134 4.134 9 C -0.135 4.135 10 C -0.013 4.013 11 C -0.538 4.538 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.228 1.228 18 H -0.193 1.193 19 C -0.151 4.151 20 C -0.172 4.172 21 H 0.126 0.874 22 H 0.127 0.873 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.090 0.910 27 H 0.161 0.839 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.733 12.020 -6.920 15.418 hybrid contribution 1.259 0.908 1.719 2.316 sum -5.474 12.928 -5.201 14.972 Atomic orbital electron populations 1.81233 1.13225 1.08631 1.09101 1.29292 0.95406 0.93101 0.93000 1.19302 0.81339 1.00250 1.05746 1.21538 0.96219 0.93696 1.04037 1.21915 0.93120 0.91458 1.00606 1.60656 1.08987 1.10248 1.51976 1.21512 0.85306 0.98662 0.95679 1.21377 0.95691 0.97472 0.98813 1.21361 0.94963 0.99347 0.97789 1.19209 0.95929 0.93523 0.92589 1.21036 1.30261 1.07412 0.95115 0.90607 1.25009 0.95593 0.95157 0.97530 1.69905 1.45319 1.29149 1.09875 0.86894 0.81316 0.81113 0.79150 1.20877 1.22782 1.19276 1.21770 0.95138 0.98720 0.99449 1.22060 0.97361 1.00801 0.96962 0.87400 0.87253 0.90178 0.91105 0.94932 0.90962 0.83870 0.91874 0.93524 0.90630 0.94689 0.92756 0.95773 0.92863 0.93924 0.94765 0.94704 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.72 18.54 42.15 0.78 -4.93 16 2 C 0.21 1.97 15.43 -20.76 -0.32 1.65 16 3 C -0.03 -0.15 5.70 -29.52 -0.17 -0.31 16 4 C -0.12 -0.90 5.43 -26.73 -0.15 -1.05 16 5 C 0.06 0.57 5.48 -3.82 -0.02 0.55 16 6 N -0.69 -9.14 6.25 -106.73 -0.67 -9.80 16 7 C 0.10 1.53 2.47 -67.71 -0.17 1.36 16 8 C -0.10 -1.68 5.30 -26.73 -0.14 -1.82 16 9 C -0.10 -1.82 5.41 -26.73 -0.14 -1.96 16 10 C 0.01 0.14 2.18 -91.77 -0.20 -0.06 16 11 C -0.50 -13.17 7.19 -34.44 -0.25 -13.42 16 12 H 0.08 2.17 6.95 -52.49 -0.37 1.80 16 13 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 14 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 15 Si 0.88 21.53 24.37 -169.99 -4.14 17.38 16 16 H -0.28 -6.69 6.87 56.52 0.39 -6.30 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.27 -6.28 6.53 56.52 0.37 -5.91 16 19 C -0.11 -2.29 4.94 -26.73 -0.13 -2.42 16 20 C -0.13 -2.41 4.95 -26.73 -0.13 -2.55 16 21 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.03 0.32 7.44 -51.93 -0.39 -0.07 16 26 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 27 H 0.34 4.71 8.47 -39.29 -0.33 4.37 16 28 H 0.06 0.94 7.80 -51.93 -0.40 0.54 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.52 6.62 -51.93 -0.34 1.18 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.04 0.94 3.27 -51.93 -0.17 0.77 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.03 0.56 7.46 -51.93 -0.39 0.18 16 38 H 0.08 1.76 7.21 -51.93 -0.37 1.39 16 LS Contribution 297.48 15.07 4.48 4.48 Total: -1.00 -30.28 297.48 -6.81 -37.09 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.12 Total: 0.13 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -1.92 Total: -18.24 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.89 Total: -40.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -30.28 -6.81 -37.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.903 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds