Wall clock time and date at job start Sun Mar 29 2020 21:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47043 * 2.62066 * 3 2 1 5 5 C 1.53006 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46893 * 109.47165 * 180.02562 * 5 4 3 7 7 C 1.46905 * 111.00246 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.47500 * 204.99866 * 7 6 5 9 9 C 1.53000 * 109.47200 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46989 * 60.00030 * 9 8 7 11 11 C 1.50694 * 109.47168 * 59.99989 * 10 9 8 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99792 * 179.72330 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53000 * 109.47124 * 299.99675 * 10 9 8 20 20 C 1.53000 * 109.46922 * 60.00284 * 19 10 9 21 21 H 1.09003 * 109.47069 * 242.62456 * 3 2 1 22 22 H 1.09002 * 109.47355 * 122.62052 * 3 2 1 23 23 H 1.08996 * 109.47510 * 60.00438 * 4 3 2 24 24 H 1.09000 * 109.47510 * 299.99975 * 4 3 2 25 25 H 1.08994 * 109.47345 * 59.99849 * 5 4 3 26 26 H 1.09002 * 109.46966 * 299.99830 * 5 4 3 27 27 H 1.00900 * 111.00244 * 303.94730 * 6 5 4 28 28 H 1.08998 * 109.46545 * 324.99920 * 7 6 5 29 29 H 1.08995 * 109.47132 * 59.99890 * 8 7 6 30 30 H 1.09007 * 109.46935 * 300.00130 * 8 7 6 31 31 H 1.08998 * 109.46768 * 300.00007 * 9 8 7 32 32 H 1.09000 * 109.47156 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46926 * 179.97438 * 10 9 8 34 34 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47131 * 180.02562 * 19 10 9 36 36 H 1.08998 * 109.47544 * 300.00581 * 19 10 9 37 37 H 1.09000 * 109.47156 * 179.97438 * 20 19 10 38 38 H 1.09007 * 109.47356 * 59.99868 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4401 -0.0660 5 6 4.6486 -1.4395 -0.0653 6 7 5.1389 -2.8227 -0.1293 7 6 6.6074 -2.8613 -0.1311 8 6 7.0829 -4.1520 -0.8009 9 6 8.6124 -4.1918 -0.8034 10 6 9.1261 -4.1457 0.6371 11 6 8.5939 -5.3323 1.3984 12 1 7.9530 -6.0476 0.9045 13 6 8.9251 -5.5047 2.7257 14 7 8.4563 -6.5374 3.3916 15 14 10.0330 -4.2672 3.5803 16 1 9.2029 -3.1939 4.1840 17 1 10.8095 -4.9507 4.6456 18 1 10.9672 -3.6729 2.5906 19 6 8.6506 -2.8549 1.3070 20 6 7.1211 -2.8151 1.3094 21 1 2.9711 0.4734 0.9126 22 1 2.9711 0.5548 -0.8656 23 1 2.7556 -1.9129 -0.9785 24 1 2.7555 -1.9943 0.7996 25 1 5.0114 -0.9669 0.8474 26 1 5.0121 -0.8852 -0.9307 27 1 4.7634 -3.3748 0.6272 28 1 6.9926 -2.0030 -0.6815 29 1 6.7174 -4.1847 -1.8273 30 1 6.6976 -5.0103 -0.2505 31 1 8.9973 -3.3335 -1.3541 32 1 8.9512 -5.1111 -1.2810 33 1 10.2157 -4.1745 0.6354 34 1 8.6896 -6.6589 4.3253 35 1 9.0169 -2.8218 2.3330 36 1 9.0354 -1.9966 0.7563 37 1 6.7823 -1.8957 1.7870 38 1 6.7361 -3.6734 1.8601 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:00 Heat of formation + Delta-G solvation = -18.451814 kcal Electronic energy + Delta-G solvation = -16704.862211 eV Core-core repulsion = 14159.296874 eV Total energy + Delta-G solvation = -2545.565337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95180 -38.05202 -36.70600 -34.56158 -33.45221 -31.48228 -30.22559 -27.19602 -25.73271 -23.41273 -22.42569 -22.13378 -20.42620 -18.42565 -18.11036 -17.07212 -16.55443 -16.07363 -15.66622 -15.33857 -15.18395 -14.86022 -14.41691 -14.34784 -13.88795 -13.77769 -13.49943 -13.32214 -13.00027 -12.69815 -12.55914 -12.28634 -12.18668 -12.06305 -11.74351 -11.69027 -11.54585 -11.48892 -10.92633 -10.75628 -10.63828 -10.52634 -9.07892 -8.20107 -6.19288 1.31823 1.38439 1.47834 1.81902 1.88057 2.38542 3.07597 3.16775 3.48316 4.04573 4.14032 4.20438 4.32870 4.43877 4.45991 4.63689 4.70824 4.75186 4.81159 4.87151 4.87711 4.93290 4.98105 5.03485 5.12806 5.27156 5.34875 5.40358 5.56142 5.56521 5.58581 5.67361 5.82067 5.90649 6.36685 6.45394 6.60979 6.67592 6.87260 7.44126 8.96673 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.033255 B = 0.005081 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.777158 B = 5509.547523 C = 5768.165782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.237 3.763 3 C -0.017 4.017 4 C -0.109 4.109 5 C 0.058 3.942 6 N -0.696 5.696 7 C 0.109 3.891 8 C -0.092 4.092 9 C -0.094 4.094 10 C 0.001 3.999 11 C -0.489 4.489 12 H 0.036 0.964 13 C 0.009 3.991 14 N -0.956 5.956 15 Si 0.944 3.056 16 H -0.270 1.270 17 H -0.309 1.309 18 H -0.249 1.249 19 C -0.115 4.115 20 C -0.128 4.128 21 H 0.134 0.866 22 H 0.141 0.859 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.336 0.664 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.017 0.983 34 H 0.260 0.740 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 15.556 -7.560 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.079 4.079 3 C -0.057 4.057 4 C -0.148 4.148 5 C -0.071 4.071 6 N -0.325 5.325 7 C -0.001 4.001 8 C -0.130 4.130 9 C -0.132 4.132 10 C -0.018 4.018 11 C -0.527 4.527 12 H 0.054 0.946 13 C -0.187 4.187 14 N -0.598 5.598 15 Si 0.772 3.228 16 H -0.196 1.196 17 H -0.237 1.237 18 H -0.173 1.173 19 C -0.153 4.153 20 C -0.167 4.167 21 H 0.151 0.849 22 H 0.159 0.841 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.109 0.891 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.894 15.457 -8.116 18.426 hybrid contribution 0.985 -0.235 2.003 2.245 sum -4.909 15.223 -6.112 17.123 Atomic orbital electron populations 1.81262 1.15487 1.10822 1.11627 1.29977 0.96001 0.91089 0.90878 1.19514 0.78534 0.99203 1.08448 1.21417 0.95162 0.95011 1.03250 1.22035 0.93908 0.89330 1.01781 1.60635 1.07408 1.12617 1.51800 1.21348 0.86802 0.98092 0.93843 1.21312 0.94851 0.97369 0.99504 1.21330 0.95807 1.00340 0.95747 1.19243 0.95309 0.92870 0.94395 1.21299 1.28368 1.07918 0.95091 0.94615 1.25789 0.97387 0.96959 0.98515 1.70067 1.47802 1.31713 1.10185 0.85918 0.79750 0.78980 0.78107 1.19631 1.23746 1.17258 1.21743 0.96550 0.98447 0.98523 1.22000 0.95987 1.00159 0.98568 0.84860 0.84108 0.90962 0.92176 0.94138 0.89129 0.84625 0.89297 0.91750 0.94617 0.91241 0.93935 0.96534 0.93132 0.95659 0.91166 0.92164 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.90 18.54 20.00 0.37 -12.53 16 2 C 0.24 3.98 15.43 89.44 1.38 5.36 16 3 C -0.02 -0.12 5.70 28.79 0.16 0.04 16 4 C -0.11 -1.36 5.43 30.60 0.17 -1.20 16 5 C 0.06 0.89 5.48 86.31 0.47 1.36 16 6 N -0.70 -16.72 6.25 -491.58 -3.07 -19.79 16 7 C 0.11 3.08 2.47 44.91 0.11 3.19 16 8 C -0.09 -3.12 5.30 30.59 0.16 -2.96 16 9 C -0.09 -3.37 5.41 30.59 0.17 -3.21 16 10 C 0.00 0.03 2.18 -11.54 -0.03 0.00 16 11 C -0.49 -26.46 7.19 25.60 0.18 -26.28 16 12 H 0.04 2.17 6.95 -2.91 -0.02 2.15 16 13 C 0.01 0.51 5.45 84.66 0.46 0.97 16 14 N -0.96 -59.28 13.96 21.45 0.30 -58.98 16 15 Si 0.94 44.49 24.37 68.60 1.67 46.16 16 16 H -0.27 -12.10 6.87 99.48 0.68 -11.42 16 17 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 18 H -0.25 -10.83 6.53 99.48 0.65 -10.18 16 19 C -0.11 -4.31 4.94 30.59 0.15 -4.16 16 20 C -0.13 -4.35 4.95 30.60 0.15 -4.20 16 21 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 22 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 0.59 7.44 -2.39 -0.02 0.57 16 26 H 0.09 1.11 8.05 -2.39 -0.02 1.09 16 27 H 0.34 8.94 8.47 -89.69 -0.76 8.18 16 28 H 0.09 2.14 7.80 -2.39 -0.02 2.12 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.03 1.48 6.62 -2.38 -0.02 1.46 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.02 0.74 7.20 -2.39 -0.02 0.72 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.03 1.04 3.27 -2.39 -0.01 1.03 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 37 H 0.06 1.73 7.46 -2.39 -0.02 1.72 16 38 H 0.04 1.74 7.21 -2.38 -0.02 1.72 16 Total: -1.00 -69.48 297.48 3.02 -66.46 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.20 Total: 9.75 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.55 Total: -31.07 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -2.40 Total: -91.31 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.67 Total: 46.16 kcal Total: -69.48 3.02 -66.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.009 kcal (2) G-P(sol) polarization free energy of solvation -69.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds