Wall clock time and date at job start Sun Mar 29 2020 21:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46953 * 2 1 4 4 H 1.08999 * 109.47173 * 54.99750 * 3 2 1 5 5 C 1.47196 * 109.47171 * 175.00083 * 3 2 1 6 6 N 3.43553 * 154.82378 * 8.43164 * 2 1 3 7 7 N 1.46906 * 109.46945 * 294.99845 * 3 2 1 8 8 C 1.46902 * 110.99573 * 155.00126 * 7 3 2 9 9 C 1.52999 * 109.47083 * 274.99770 * 8 7 3 10 10 C 1.53008 * 109.46872 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47309 * 60.00115 * 10 9 8 12 12 C 1.50693 * 109.46919 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99773 * 120.00294 * 12 11 10 14 14 C 1.37876 * 120.00315 * 299.99636 * 12 11 10 15 15 N 1.31519 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46868 * 60.00581 * 16 14 12 18 18 H 1.48498 * 109.47057 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47377 * 300.00383 * 16 14 12 20 20 C 1.53002 * 109.46983 * 300.00318 * 11 10 9 21 21 C 1.52995 * 109.47438 * 59.99508 * 20 11 10 22 22 H 1.08997 * 109.46989 * 60.00434 * 1 2 3 23 23 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47282 * 300.00007 * 1 2 3 25 25 H 1.09002 * 109.47282 * 239.99993 * 2 1 3 26 26 H 1.08998 * 109.47260 * 120.00042 * 2 1 3 27 27 H 1.00896 * 111.00309 * 31.04538 * 7 3 2 28 28 H 1.08995 * 109.47359 * 35.00383 * 8 7 3 29 29 H 1.09003 * 109.46954 * 300.00265 * 9 8 7 30 30 H 1.09000 * 109.47023 * 60.00485 * 9 8 7 31 31 H 1.09001 * 109.46807 * 300.00044 * 10 9 8 32 32 H 1.08996 * 109.46660 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.46607 * 59.99534 * 11 10 9 34 34 H 0.96997 * 120.00357 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46545 * 299.99823 * 20 11 10 36 36 H 1.09004 * 109.47206 * 180.02562 * 20 11 10 37 37 H 1.09004 * 109.47017 * 179.97438 * 21 20 11 38 38 H 1.09003 * 109.46995 * 60.00590 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5070 1.4443 0.1209 6 7 4.6392 1.4457 0.2143 7 7 1.6513 2.0992 -1.2553 8 6 1.5725 3.5562 -1.0846 9 6 0.1938 3.9318 -0.5379 10 6 0.1115 5.4493 -0.3607 11 6 0.3277 6.1330 -1.7123 12 6 0.2460 7.6276 -1.5378 13 1 1.0929 8.2479 -1.7915 14 6 -0.9099 8.2032 -1.0546 15 7 -1.9411 7.4477 -0.7453 16 14 -1.0108 10.0558 -0.8377 17 1 -0.8007 10.7199 -2.1492 18 1 -2.3495 10.4199 -0.3080 19 1 0.0371 10.5004 0.1158 20 6 1.7064 5.7573 -2.2591 21 6 1.7887 4.2399 -2.4362 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.7798 1.7282 -1.6028 28 1 2.3421 3.8822 -0.3850 29 1 -0.5757 3.6057 -1.2376 30 1 0.0397 3.4444 0.4249 31 1 0.8811 5.7757 0.3388 32 1 -0.8705 5.7168 0.0292 33 1 -0.4419 5.8065 -2.4118 34 1 -2.7542 7.8526 -0.4050 35 1 2.4759 6.0838 -1.5596 36 1 1.8606 6.2448 -3.2218 37 1 2.7708 3.9724 -2.8262 38 1 1.0191 3.9135 -3.1358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:37 Heat of formation + Delta-G solvation = -2.199291 kcal Electronic energy + Delta-G solvation = -16957.073986 eV Core-core repulsion = 14412.213411 eV Total energy + Delta-G solvation = -2544.860575 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.93808 -36.90754 -35.28741 -33.18327 -31.53205 -29.72181 -28.64723 -26.51857 -24.08556 -22.03256 -21.58233 -20.70942 -18.85697 -17.50635 -16.33300 -15.93580 -15.70558 -14.58043 -13.93051 -13.76239 -13.52596 -13.28387 -13.15718 -12.80875 -12.56347 -12.36233 -12.11850 -11.95098 -11.65456 -11.43095 -11.26329 -11.04053 -10.94958 -10.76180 -10.46872 -10.33547 -10.18397 -9.97746 -9.40897 -9.06114 -8.70763 -8.37771 -8.19131 -5.97570 -4.03253 2.76547 2.83819 3.32275 3.36779 3.39991 3.91772 4.31450 4.45090 4.70203 4.85490 5.07695 5.27817 5.30233 5.35646 5.47234 5.60048 5.72574 5.81568 5.85810 6.03880 6.13690 6.22031 6.28105 6.36534 6.59398 6.62584 6.79429 6.87546 7.05176 7.16663 7.25030 7.39726 7.50609 7.66934 7.75516 8.02754 8.15201 8.48809 9.00790 9.61409 11.07905 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036959 B = 0.005558 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.416438 B = 5036.820906 C = 5379.744581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C 0.178 3.822 4 H 0.091 0.909 5 C 0.226 3.774 6 N -0.440 5.440 7 N -0.680 5.680 8 C 0.086 3.914 9 C -0.143 4.143 10 C -0.106 4.106 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.109 4.109 21 C -0.100 4.100 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.355 0.645 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.259 0.741 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -13.112 1.462 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C 0.065 3.935 4 H 0.108 0.892 5 C -0.094 4.094 6 N -0.116 5.116 7 N -0.315 5.315 8 C -0.023 4.023 9 C -0.182 4.182 10 C -0.145 4.145 11 C 0.031 3.969 12 C -0.551 4.551 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.148 4.148 21 C -0.138 4.138 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.824 -13.089 1.412 13.709 hybrid contribution -1.339 1.201 0.636 1.908 sum 2.485 -11.888 2.048 12.316 Atomic orbital electron populations 1.21841 0.94311 1.02545 1.02726 1.21661 0.96874 0.93684 1.03754 1.18963 0.82410 0.97123 0.95047 0.89192 1.29202 0.95005 0.92744 0.92425 1.81148 1.12883 1.08681 1.08936 1.60521 1.39358 1.05695 1.25922 1.21788 0.97582 0.84527 0.98368 1.22291 0.95975 1.00836 0.99055 1.21565 1.03318 0.89456 1.00154 1.18648 0.90870 0.94705 0.92723 1.21216 0.98982 0.92121 1.42748 0.92893 1.24953 0.95782 0.97713 0.95497 1.69855 1.03765 1.34672 1.44833 0.86719 0.77026 0.86150 0.78462 1.20340 1.21361 1.20375 1.21639 1.00559 0.92472 1.00098 1.21477 1.00523 0.96476 0.95343 0.91907 0.91802 0.92032 0.90200 0.90608 0.82246 0.91141 0.92427 0.94016 0.94893 0.88972 0.95695 0.93079 0.93566 0.93268 0.93083 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.74 37.16 0.36 -0.75 16 2 C -0.12 -0.96 5.48 -26.73 -0.15 -1.10 16 3 C 0.18 1.92 2.32 -70.50 -0.16 1.76 16 4 H 0.09 0.93 7.11 -51.93 -0.37 0.56 16 5 C 0.23 3.10 14.61 -20.76 -0.30 2.79 16 6 N -0.44 -7.14 18.54 42.16 0.78 -6.36 16 7 N -0.68 -8.41 6.02 -102.69 -0.62 -9.03 16 8 C 0.09 1.33 2.27 -67.71 -0.15 1.18 16 9 C -0.14 -2.41 5.16 -26.73 -0.14 -2.54 16 10 C -0.11 -2.35 4.98 -26.73 -0.13 -2.48 16 11 C 0.05 1.17 2.10 -91.77 -0.19 0.97 16 12 C -0.51 -13.83 8.56 -34.44 -0.29 -14.13 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 16 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 C -0.11 -2.23 5.14 -26.73 -0.14 -2.37 16 21 C -0.10 -1.70 5.53 -26.73 -0.15 -1.85 16 22 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 23 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.35 3.84 6.21 -39.29 -0.24 3.60 16 28 H 0.07 1.18 7.62 -51.93 -0.40 0.78 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.04 0.62 7.43 -51.93 -0.39 0.24 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 304.39 15.07 4.59 4.59 Total: -1.00 -28.80 304.39 -7.42 -36.22 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.23 Total: -0.32 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.54 Total: -16.94 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.79 Total: -39.60 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.80 -7.42 -36.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.023 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds