Wall clock time and date at job start Sun Mar 29 2020 21:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46953 * 2 1 4 4 H 1.08999 * 109.47173 * 54.99750 * 3 2 1 5 5 C 1.47196 * 109.47171 * 175.00083 * 3 2 1 6 6 N 3.43553 * 154.82378 * 8.43164 * 2 1 3 7 7 N 1.46906 * 109.46945 * 294.99845 * 3 2 1 8 8 C 1.46902 * 110.99573 * 155.00126 * 7 3 2 9 9 C 1.52999 * 109.47083 * 274.99770 * 8 7 3 10 10 C 1.53008 * 109.46872 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47309 * 60.00115 * 10 9 8 12 12 C 1.50693 * 109.46919 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99773 * 120.00294 * 12 11 10 14 14 C 1.37876 * 120.00315 * 299.99636 * 12 11 10 15 15 N 1.31519 * 119.99852 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46868 * 60.00581 * 16 14 12 18 18 H 1.48498 * 109.47057 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47377 * 300.00383 * 16 14 12 20 20 C 1.53002 * 109.46983 * 300.00318 * 11 10 9 21 21 C 1.52995 * 109.47438 * 59.99508 * 20 11 10 22 22 H 1.08997 * 109.46989 * 60.00434 * 1 2 3 23 23 H 1.09000 * 109.46787 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47282 * 300.00007 * 1 2 3 25 25 H 1.09002 * 109.47282 * 239.99993 * 2 1 3 26 26 H 1.08998 * 109.47260 * 120.00042 * 2 1 3 27 27 H 1.00896 * 111.00309 * 31.04538 * 7 3 2 28 28 H 1.08995 * 109.47359 * 35.00383 * 8 7 3 29 29 H 1.09003 * 109.46954 * 300.00265 * 9 8 7 30 30 H 1.09000 * 109.47023 * 60.00485 * 9 8 7 31 31 H 1.09001 * 109.46807 * 300.00044 * 10 9 8 32 32 H 1.08996 * 109.46660 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.46607 * 59.99534 * 11 10 9 34 34 H 0.96997 * 120.00357 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46545 * 299.99823 * 20 11 10 36 36 H 1.09004 * 109.47206 * 180.02562 * 20 11 10 37 37 H 1.09004 * 109.47017 * 179.97438 * 21 20 11 38 38 H 1.09003 * 109.46995 * 60.00590 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5070 1.4443 0.1209 6 7 4.6392 1.4457 0.2143 7 7 1.6513 2.0992 -1.2553 8 6 1.5725 3.5562 -1.0846 9 6 0.1938 3.9318 -0.5379 10 6 0.1115 5.4493 -0.3607 11 6 0.3277 6.1330 -1.7123 12 6 0.2460 7.6276 -1.5378 13 1 1.0929 8.2479 -1.7915 14 6 -0.9099 8.2032 -1.0546 15 7 -1.9411 7.4477 -0.7453 16 14 -1.0108 10.0558 -0.8377 17 1 -0.8007 10.7199 -2.1492 18 1 -2.3495 10.4199 -0.3080 19 1 0.0371 10.5004 0.1158 20 6 1.7064 5.7573 -2.2591 21 6 1.7887 4.2399 -2.4362 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.7798 1.7282 -1.6028 28 1 2.3421 3.8822 -0.3850 29 1 -0.5757 3.6057 -1.2376 30 1 0.0397 3.4444 0.4249 31 1 0.8811 5.7757 0.3388 32 1 -0.8705 5.7168 0.0292 33 1 -0.4419 5.8065 -2.4118 34 1 -2.7542 7.8526 -0.4050 35 1 2.4759 6.0838 -1.5596 36 1 1.8606 6.2448 -3.2218 37 1 2.7708 3.9724 -2.8262 38 1 1.0191 3.9135 -3.1358 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331503.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:36 Heat of formation + Delta-G solvation = -18.979310 kcal Electronic energy + Delta-G solvation = -16957.801623 eV Core-core repulsion = 14412.213411 eV Total energy + Delta-G solvation = -2545.588211 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.16584 -38.21070 -36.47320 -34.79262 -32.91319 -31.28221 -29.98733 -27.70950 -25.82113 -23.22914 -22.67405 -22.21620 -20.46558 -18.48245 -18.35916 -16.93807 -16.91893 -16.45680 -15.09924 -14.92014 -14.69516 -14.54351 -14.50039 -14.20805 -13.97490 -13.75671 -13.45910 -13.04843 -12.90961 -12.85111 -12.57386 -12.49273 -12.32483 -12.12888 -11.80979 -11.77868 -11.69434 -11.59475 -11.14208 -10.78309 -10.55538 -10.33676 -9.43456 -8.04710 -6.17719 1.42557 1.42599 1.50296 1.69641 1.79387 2.45373 2.95052 3.21089 3.30469 3.92138 4.00264 4.10585 4.21357 4.41997 4.47133 4.61274 4.63074 4.72691 4.80793 4.86879 4.93730 5.03014 5.11933 5.21061 5.25351 5.26248 5.37505 5.43492 5.50926 5.52719 5.63837 5.72994 5.98519 6.09365 6.26424 6.40414 6.47467 6.64205 6.94315 7.49713 8.98350 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.036959 B = 0.005558 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.416438 B = 5036.820906 C = 5379.744581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.178 3.822 4 H 0.103 0.897 5 C 0.244 3.756 6 N -0.488 5.488 7 N -0.676 5.676 8 C 0.099 3.901 9 C -0.130 4.130 10 C -0.100 4.100 11 C 0.046 3.954 12 C -0.538 4.538 13 H 0.045 0.955 14 C 0.016 3.984 15 N -0.913 5.913 16 Si 0.946 3.054 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.103 4.103 21 C -0.094 4.094 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.368 0.632 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.021 0.979 32 H 0.060 0.940 33 H -0.002 1.002 34 H 0.260 0.740 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.061 0.939 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -14.408 1.713 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.065 3.935 4 H 0.120 0.880 5 C -0.075 4.075 6 N -0.166 5.166 7 N -0.312 5.312 8 C -0.011 4.011 9 C -0.169 4.169 10 C -0.139 4.139 11 C 0.027 3.973 12 C -0.576 4.576 13 H 0.063 0.937 14 C -0.182 4.182 15 N -0.553 5.553 16 Si 0.772 3.228 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.142 4.142 21 C -0.132 4.132 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.192 0.808 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.016 0.984 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.666 -14.399 1.654 14.951 hybrid contribution -1.310 1.614 0.544 2.148 sum 2.356 -12.786 2.199 13.186 Atomic orbital electron populations 1.21851 0.93401 1.03482 1.02619 1.21654 0.97441 0.91448 1.04603 1.19240 0.80639 0.99091 0.94552 0.87967 1.29761 0.95486 0.91227 0.91017 1.81167 1.14491 1.10442 1.10475 1.60356 1.40195 1.03635 1.26986 1.21491 0.96148 0.86499 0.96930 1.22147 0.97125 0.96949 1.00698 1.21352 1.00897 0.93210 0.98450 1.18627 0.91972 0.93380 0.93281 1.21619 0.98949 0.94060 1.42946 0.93693 1.25642 0.95577 1.01694 0.95328 1.69981 1.04023 1.36083 1.45177 0.85807 0.77130 0.81438 0.78438 1.19952 1.20799 1.20021 1.21510 0.98113 0.95227 0.99313 1.21380 1.01308 0.93899 0.96572 0.92132 0.90451 0.91983 0.89937 0.89280 0.80757 0.92063 0.92149 0.91475 0.96006 0.92189 0.98409 0.93104 0.94202 0.93807 0.92032 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.74 71.98 0.70 -0.96 16 2 C -0.11 -1.40 5.48 30.59 0.17 -1.23 16 3 C 0.18 3.31 2.32 43.11 0.10 3.41 16 4 H 0.10 1.76 7.11 -2.39 -0.02 1.75 16 5 C 0.24 6.21 14.61 89.44 1.31 7.52 16 6 N -0.49 -15.32 18.54 20.01 0.37 -14.95 16 7 N -0.68 -14.76 6.02 -478.81 -2.88 -17.65 16 8 C 0.10 2.87 2.27 44.91 0.10 2.97 16 9 C -0.13 -4.18 5.16 30.60 0.16 -4.02 16 10 C -0.10 -4.45 4.98 30.60 0.15 -4.30 16 11 C 0.05 2.23 2.10 -11.54 -0.02 2.20 16 12 C -0.54 -29.62 8.56 25.60 0.22 -29.40 16 13 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 14 C 0.02 0.89 5.30 84.65 0.45 1.34 16 15 N -0.91 -51.61 11.32 21.45 0.24 -51.37 16 16 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 20 C -0.10 -4.22 5.14 30.59 0.16 -4.06 16 21 C -0.09 -3.05 5.53 30.59 0.17 -2.88 16 22 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 23 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.37 6.72 6.21 -89.70 -0.56 6.16 16 28 H 0.06 1.93 7.62 -2.39 -0.02 1.91 16 29 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 30 H 0.07 1.83 7.43 -2.39 -0.02 1.81 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 33 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 34 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -62.86 304.39 3.89 -58.97 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.47 Total: 8.87 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 3.66 Total: -29.42 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -2.27 Total: -83.96 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.86 3.89 -58.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331503.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.994 kcal (2) G-P(sol) polarization free energy of solvation -62.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds