Wall clock time and date at job start Sun Mar 29 2020 21:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47375 * 2 1 4 4 H 1.09003 * 109.47484 * 304.99869 * 3 2 1 5 5 C 1.47201 * 109.47510 * 185.00040 * 3 2 1 6 6 N 3.43545 * 154.82763 * 351.56396 * 2 1 3 7 7 N 1.46900 * 109.47477 * 65.00257 * 3 2 1 8 8 C 1.46898 * 111.00182 * 205.00152 * 7 3 2 9 9 C 1.52999 * 109.47222 * 85.00080 * 8 7 3 10 10 C 1.52997 * 109.46991 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47131 * 299.99311 * 10 9 8 12 12 C 1.50693 * 109.47292 * 299.99946 * 11 10 9 13 13 H 1.08005 * 119.99924 * 119.99568 * 12 11 10 14 14 C 1.37875 * 120.00332 * 299.99866 * 12 11 10 15 15 N 1.31513 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47117 * 60.00635 * 16 14 12 18 18 H 1.48503 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47600 * 300.00064 * 16 14 12 20 20 C 1.53002 * 109.46972 * 60.00459 * 11 10 9 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 11 10 22 22 H 1.08997 * 109.46976 * 299.99982 * 1 2 3 23 23 H 1.09007 * 109.46997 * 59.99433 * 1 2 3 24 24 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46728 * 240.00054 * 2 1 3 26 26 H 1.08995 * 109.46925 * 120.00123 * 2 1 3 27 27 H 1.00903 * 110.99682 * 328.95261 * 7 3 2 28 28 H 1.08993 * 109.47084 * 324.99163 * 8 7 3 29 29 H 1.09002 * 109.46719 * 299.99704 * 9 8 7 30 30 H 1.08993 * 109.47839 * 59.99546 * 9 8 7 31 31 H 1.09001 * 109.47289 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.47611 * 59.99933 * 10 9 8 33 33 H 1.09000 * 109.47054 * 180.02562 * 11 10 9 34 34 H 0.96997 * 119.99786 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47070 * 179.97438 * 20 11 10 36 36 H 1.08996 * 109.47407 * 59.99513 * 20 11 10 37 37 H 1.09001 * 109.47502 * 300.00518 * 21 20 11 38 38 H 1.09001 * 109.47289 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4454 -0.2144 7 7 1.6515 2.0992 1.2552 8 6 1.5728 3.5562 1.0846 9 6 0.1941 3.9318 0.5379 10 6 0.1119 5.4493 0.3608 11 6 0.3280 6.1329 1.7124 12 6 -0.7360 5.6817 2.6794 13 1 -0.4569 5.1773 3.5927 14 6 -2.0659 5.9127 2.3983 15 7 -2.4059 6.5264 1.2859 16 14 -3.3848 5.3527 3.5968 17 1 -3.1752 6.0158 4.9088 18 1 -4.7230 5.7169 3.0658 19 1 -3.3049 3.8798 3.7681 20 6 1.7067 5.7573 2.2592 21 6 1.7889 4.2398 2.4363 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 0.7799 1.7282 1.6027 28 1 2.3423 3.8821 0.3850 29 1 0.0399 3.4444 -0.4248 30 1 -0.5755 3.6058 1.2375 31 1 -0.8702 5.7170 -0.0291 32 1 0.8814 5.7758 -0.3387 33 1 0.2690 7.2140 1.5863 34 1 -3.3415 6.6885 1.0880 35 1 1.8609 6.2447 3.2219 36 1 2.4763 6.0836 1.5597 37 1 1.0193 3.9134 3.1357 38 1 2.7710 3.9722 2.8262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:39 Heat of formation + Delta-G solvation = 1.006342 kcal Electronic energy + Delta-G solvation = -17320.901953 eV Core-core repulsion = 14776.180385 eV Total energy + Delta-G solvation = -2544.721568 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.86772 -36.93111 -35.24027 -32.96347 -31.45650 -29.56738 -28.44575 -26.24857 -24.48053 -21.93241 -21.48960 -20.77717 -18.76225 -17.41870 -16.12623 -15.79637 -15.27154 -14.60447 -14.00133 -13.81556 -13.46930 -13.19204 -13.11005 -12.77021 -12.49088 -12.31837 -11.84898 -11.81468 -11.53469 -11.38497 -11.05223 -10.99420 -10.91943 -10.79166 -10.61341 -10.34627 -10.10342 -9.71988 -9.21065 -9.05495 -8.71574 -8.33738 -8.06802 -5.97123 -4.01578 2.83081 2.89342 3.29514 3.35551 3.38083 3.99843 4.42406 4.44684 4.79553 4.94896 5.17260 5.32942 5.38818 5.50873 5.58962 5.76373 5.81389 5.92284 5.99882 6.14943 6.29462 6.39422 6.41339 6.50491 6.72087 6.73906 6.87635 7.01004 7.15806 7.24389 7.41323 7.50556 7.56517 7.73309 7.75722 7.93845 8.15243 8.49185 9.01263 9.61614 11.08615 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.007382 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.835540 B = 3792.223185 C = 4322.325775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.120 4.120 3 C 0.177 3.823 4 H 0.090 0.910 5 C 0.228 3.772 6 N -0.444 5.444 7 N -0.680 5.680 8 C 0.089 3.911 9 C -0.126 4.126 10 C -0.105 4.105 11 C 0.043 3.957 12 C -0.500 4.500 13 H 0.055 0.945 14 C 0.061 3.939 15 N -0.892 5.892 16 Si 0.884 3.116 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.278 1.278 20 C -0.108 4.108 21 C -0.091 4.091 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.357 0.643 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.013 0.987 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.048 0.952 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -10.209 -2.968 11.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.159 4.159 3 C 0.064 3.936 4 H 0.107 0.893 5 C -0.091 4.091 6 N -0.120 5.120 7 N -0.315 5.315 8 C -0.019 4.019 9 C -0.165 4.165 10 C -0.143 4.143 11 C 0.024 3.976 12 C -0.538 4.538 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.531 5.531 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.204 1.204 20 C -0.146 4.146 21 C -0.129 4.129 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.147 -10.140 -2.945 11.746 hybrid contribution -2.047 -0.118 0.162 2.057 sum 3.100 -10.258 -2.783 11.071 Atomic orbital electron populations 1.21844 0.94282 1.02480 1.02876 1.21652 0.96907 0.93722 1.03624 1.18965 0.82295 0.97121 0.95243 0.89295 1.29252 0.95040 0.92582 0.92255 1.81128 1.12917 1.08863 1.09140 1.60534 1.39567 1.05835 1.25546 1.21742 0.97442 0.84496 0.98260 1.22030 0.96492 0.99281 0.98682 1.21457 1.01794 0.92572 0.98509 1.18690 0.90414 0.95769 0.92679 1.21126 0.90652 1.37113 1.04947 0.92665 1.24938 0.98519 0.95373 0.95140 1.69857 1.17047 1.42313 1.23906 0.86793 0.81221 0.79092 0.81681 1.20427 1.21504 1.20373 1.21566 0.99072 0.94513 0.99452 1.21329 1.00191 0.95520 0.95863 0.91734 0.92070 0.91878 0.90736 0.90236 0.82020 0.91993 0.95058 0.90592 0.89062 0.96847 0.95832 0.93136 0.93369 0.94969 0.91023 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.74 37.16 0.36 -0.97 16 2 C -0.12 -1.08 5.48 -26.73 -0.15 -1.22 16 3 C 0.18 2.08 2.32 -70.50 -0.16 1.92 16 4 H 0.09 1.00 7.11 -51.93 -0.37 0.63 16 5 C 0.23 3.26 14.61 -20.76 -0.30 2.96 16 6 N -0.44 -7.38 18.54 42.15 0.78 -6.60 16 7 N -0.68 -9.36 6.02 -102.70 -0.62 -9.98 16 8 C 0.09 1.49 2.27 -67.71 -0.15 1.33 16 9 C -0.13 -2.33 4.94 -26.73 -0.13 -2.46 16 10 C -0.10 -2.30 5.23 -26.73 -0.14 -2.44 16 11 C 0.04 1.01 2.59 -91.78 -0.24 0.77 16 12 C -0.50 -12.69 6.61 -34.44 -0.23 -12.92 16 13 H 0.06 1.39 6.71 -52.48 -0.35 1.04 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 15 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 16 Si 0.88 20.33 29.54 -169.99 -5.02 15.31 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.11 -2.19 5.41 -26.73 -0.14 -2.33 16 21 C -0.09 -1.67 5.30 -26.73 -0.14 -1.82 16 22 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.36 4.57 6.21 -39.29 -0.24 4.33 16 28 H 0.06 1.07 7.62 -51.93 -0.40 0.67 16 29 H 0.03 0.51 7.43 -51.93 -0.39 0.13 16 30 H 0.08 1.55 7.20 -51.93 -0.37 1.17 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 299.52 15.07 4.51 4.51 Total: -1.00 -27.61 299.52 -7.29 -34.90 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.05 Total: 1.22 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.52 Total: -15.68 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.79 Total: -40.27 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.61 -7.29 -34.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.909 kcal (2) G-P(sol) polarization free energy of solvation -27.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds