Wall clock time and date at job start Sun Mar 29 2020 21:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47375 * 2 1 4 4 H 1.09003 * 109.47484 * 304.99869 * 3 2 1 5 5 C 1.47201 * 109.47510 * 185.00040 * 3 2 1 6 6 N 3.43545 * 154.82763 * 351.56396 * 2 1 3 7 7 N 1.46900 * 109.47477 * 65.00257 * 3 2 1 8 8 C 1.46898 * 111.00182 * 205.00152 * 7 3 2 9 9 C 1.52999 * 109.47222 * 85.00080 * 8 7 3 10 10 C 1.52997 * 109.46991 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47131 * 299.99311 * 10 9 8 12 12 C 1.50693 * 109.47292 * 299.99946 * 11 10 9 13 13 H 1.08005 * 119.99924 * 119.99568 * 12 11 10 14 14 C 1.37875 * 120.00332 * 299.99866 * 12 11 10 15 15 N 1.31513 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99893 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47117 * 60.00635 * 16 14 12 18 18 H 1.48503 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47600 * 300.00064 * 16 14 12 20 20 C 1.53002 * 109.46972 * 60.00459 * 11 10 9 21 21 C 1.52997 * 109.46817 * 299.99733 * 20 11 10 22 22 H 1.08997 * 109.46976 * 299.99982 * 1 2 3 23 23 H 1.09007 * 109.46997 * 59.99433 * 1 2 3 24 24 H 1.08994 * 109.47593 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46728 * 240.00054 * 2 1 3 26 26 H 1.08995 * 109.46925 * 120.00123 * 2 1 3 27 27 H 1.00903 * 110.99682 * 328.95261 * 7 3 2 28 28 H 1.08993 * 109.47084 * 324.99163 * 8 7 3 29 29 H 1.09002 * 109.46719 * 299.99704 * 9 8 7 30 30 H 1.08993 * 109.47839 * 59.99546 * 9 8 7 31 31 H 1.09001 * 109.47289 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.47611 * 59.99933 * 10 9 8 33 33 H 1.09000 * 109.47054 * 180.02562 * 11 10 9 34 34 H 0.96997 * 119.99786 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47070 * 179.97438 * 20 11 10 36 36 H 1.08996 * 109.47407 * 59.99513 * 20 11 10 37 37 H 1.09001 * 109.47502 * 300.00518 * 21 20 11 38 38 H 1.09001 * 109.47289 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4454 -0.2144 7 7 1.6515 2.0992 1.2552 8 6 1.5728 3.5562 1.0846 9 6 0.1941 3.9318 0.5379 10 6 0.1119 5.4493 0.3608 11 6 0.3280 6.1329 1.7124 12 6 -0.7360 5.6817 2.6794 13 1 -0.4569 5.1773 3.5927 14 6 -2.0659 5.9127 2.3983 15 7 -2.4059 6.5264 1.2859 16 14 -3.3848 5.3527 3.5968 17 1 -3.1752 6.0158 4.9088 18 1 -4.7230 5.7169 3.0658 19 1 -3.3049 3.8798 3.7681 20 6 1.7067 5.7573 2.2592 21 6 1.7889 4.2398 2.4363 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 0.7799 1.7282 1.6027 28 1 2.3423 3.8821 0.3850 29 1 0.0399 3.4444 -0.4248 30 1 -0.5755 3.6058 1.2375 31 1 -0.8702 5.7170 -0.0291 32 1 0.8814 5.7758 -0.3387 33 1 0.2690 7.2140 1.5863 34 1 -3.3415 6.6885 1.0880 35 1 1.8609 6.2447 3.2219 36 1 2.4763 6.0836 1.5597 37 1 1.0193 3.9134 3.1357 38 1 2.7710 3.9722 2.8262 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:38 Heat of formation + Delta-G solvation = -14.600302 kcal Electronic energy + Delta-G solvation = -17321.578708 eV Core-core repulsion = 14776.180385 eV Total energy + Delta-G solvation = -2545.398323 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19315 -38.26613 -36.45006 -34.53608 -32.89521 -31.18673 -29.74766 -27.55154 -26.23287 -23.16442 -22.67366 -22.26991 -20.48914 -18.45898 -17.82175 -16.93669 -16.81336 -16.32480 -15.41456 -14.92903 -14.70858 -14.55766 -14.49856 -14.19036 -13.75132 -13.66531 -13.12289 -13.10854 -12.90084 -12.75196 -12.61817 -12.47065 -12.42400 -12.10197 -11.87362 -11.72282 -11.69173 -11.41286 -10.90677 -10.71892 -10.55521 -10.27251 -9.37062 -7.97174 -6.07459 1.46706 1.48786 1.54641 1.70980 1.80112 2.50901 2.96458 3.30866 3.35193 3.94858 4.07680 4.14705 4.27062 4.43214 4.50450 4.63638 4.71806 4.80838 4.84767 4.92061 4.94261 5.05729 5.14673 5.19483 5.25770 5.28436 5.47923 5.50921 5.57209 5.65869 5.71696 5.78658 6.00226 6.09445 6.28559 6.41911 6.52318 6.65090 7.02295 7.58553 9.07223 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.026869 B = 0.007382 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.835540 B = 3792.223185 C = 4322.325775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C 0.178 3.822 4 H 0.103 0.897 5 C 0.246 3.754 6 N -0.487 5.487 7 N -0.678 5.678 8 C 0.102 3.898 9 C -0.114 4.114 10 C -0.102 4.102 11 C 0.037 3.963 12 C -0.503 4.503 13 H 0.055 0.945 14 C 0.016 3.984 15 N -0.920 5.920 16 Si 0.940 3.060 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.265 1.265 20 C -0.104 4.104 21 C -0.085 4.085 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.365 0.635 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.021 0.979 33 H -0.017 1.017 34 H 0.256 0.744 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.059 0.941 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.005 -12.230 -2.935 12.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C 0.065 3.935 4 H 0.120 0.880 5 C -0.073 4.073 6 N -0.165 5.165 7 N -0.314 5.314 8 C -0.007 4.007 9 C -0.153 4.153 10 C -0.141 4.141 11 C 0.019 3.981 12 C -0.542 4.542 13 H 0.073 0.927 14 C -0.182 4.182 15 N -0.560 5.560 16 Si 0.767 3.233 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.190 1.190 20 C -0.142 4.142 21 C -0.123 4.123 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.189 0.811 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.001 0.999 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.173 -12.179 -2.901 13.547 hybrid contribution -2.043 0.560 0.144 2.123 sum 3.131 -11.620 -2.756 12.346 Atomic orbital electron populations 1.21848 0.93704 1.03388 1.02462 1.21642 0.97186 0.91648 1.04599 1.19218 0.80765 0.98972 0.94587 0.87985 1.29702 0.95391 0.91217 0.90980 1.81152 1.14344 1.10445 1.10520 1.60390 1.40115 1.04029 1.26868 1.21468 0.96017 0.86302 0.96930 1.21883 0.97209 0.96588 0.99640 1.21325 1.00167 0.95174 0.97411 1.18693 0.92150 0.93508 0.93746 1.21352 0.91222 1.36535 1.05042 0.92706 1.25590 1.00468 0.95645 0.96473 1.70010 1.17103 1.43487 1.25409 0.85890 0.78635 0.79276 0.79511 1.20541 1.21788 1.19004 1.21477 0.97199 0.96239 0.99255 1.21243 1.00386 0.93964 0.96753 0.92597 0.91987 0.90408 0.89063 0.90037 0.81052 0.91958 0.92621 0.92408 0.92267 0.96003 0.99858 0.93454 0.93790 0.93935 0.92196 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.74 71.98 0.70 -1.44 16 2 C -0.11 -1.62 5.48 30.59 0.17 -1.46 16 3 C 0.18 3.63 2.32 43.11 0.10 3.73 16 4 H 0.10 1.92 7.11 -2.39 -0.02 1.91 16 5 C 0.25 6.45 14.61 89.44 1.31 7.76 16 6 N -0.49 -15.42 18.54 20.01 0.37 -15.05 16 7 N -0.68 -16.83 6.02 -478.83 -2.88 -19.71 16 8 C 0.10 3.19 2.27 44.92 0.10 3.29 16 9 C -0.11 -4.05 4.94 30.59 0.15 -3.90 16 10 C -0.10 -4.49 5.23 30.59 0.16 -4.33 16 11 C 0.04 1.79 2.59 -11.54 -0.03 1.76 16 12 C -0.50 -25.69 6.61 25.60 0.17 -25.52 16 13 H 0.05 2.75 6.71 -2.91 -0.02 2.74 16 14 C 0.02 0.84 5.30 84.65 0.45 1.29 16 15 N -0.92 -51.08 11.32 21.45 0.24 -50.84 16 16 Si 0.94 41.57 29.54 68.60 2.03 43.59 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 20 C -0.10 -4.15 5.41 30.59 0.17 -3.98 16 21 C -0.09 -3.01 5.30 30.60 0.16 -2.84 16 22 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 23 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.37 8.34 6.21 -89.69 -0.56 7.78 16 28 H 0.06 1.98 7.62 -2.39 -0.02 1.96 16 29 H 0.06 1.69 7.43 -2.39 -0.02 1.67 16 30 H 0.06 2.28 7.20 -2.39 -0.02 2.26 16 31 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 34 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 2.25 6.62 -2.39 -0.02 2.24 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -59.48 299.52 3.84 -55.64 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.48 Total: 12.01 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.60 Total: -25.63 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.27 Total: -85.60 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -59.48 3.84 -55.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.036 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds